View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16904_low_9 (Length: 588)
Name: NF16904_low_9
Description: NF16904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16904_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-162; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 87 - 384
Target Start/End: Complemental strand, 39730770 - 39730473
Alignment:
| Q |
87 |
tattaaaagcaccataagtttatttaataaaacaccatgagttgaatacttatactccctctaatatcatatgatactgaacaaatttaagtgtaccata |
186 |
Q |
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| T |
39730770 |
tattaaaagcaccataagtgtatttaataaaacaccatgagttgaatacttatactccctctaatatcatatgatactgaacaaatttaagtgtaccata |
39730671 |
T |
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| Q |
187 |
aatgaaatggactgaattggggtcttgtggtgaaagacacctctgtagggacgtgggaacacacataaagtcgcagctctttttgtcacacaataggacc |
286 |
Q |
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| T |
39730670 |
aatgaaatggactgaattggggtcttgtggtgaaagacacctctgtagggacgtgggaacacacataaagtcgcagctctttttgtcacacaataggacc |
39730571 |
T |
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| Q |
287 |
ctatcatacctccatttcaagaggtcccctcctccaattggcgcttttgttcaatcagtgaccttgaatattcaatcaaaatcagtgcacttgaaggt |
384 |
Q |
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| T |
39730570 |
ctatcatacctccatttcaagaggtcccctcctccaattagcgcttttgttcaatcagtgaccttgaatattcaatcaaaatcagtgcacttgaaggt |
39730473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 447 - 588
Target Start/End: Complemental strand, 39730410 - 39730269
Alignment:
| Q |
447 |
tgtgtgactgtaaaatgcactagtgggtaacaaattgagttgatcaattttgaattcactttataggaggagccccacaacaaggaaatatacctagtcc |
546 |
Q |
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| T |
39730410 |
tgtgtgactgtaaaatgcactagtgggtaacaaattgagttgatcaattttgaattcactttataggaggagccccacaacaaggaaatatacctagtcc |
39730311 |
T |
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| Q |
547 |
taaaagtgatagtggaatcacagacattattttgacatattt |
588 |
Q |
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| T |
39730310 |
taaaagtgagagtggaatcacagacattattttgacatattt |
39730269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 9619225 - 9619286
Alignment:
| Q |
1 |
tcagaatgcgagactactacaggatatgaaaatttaccctatatcttatagacccaaacgtg |
62 |
Q |
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| T |
9619225 |
tcagaatgcgagacttctacaggatatgaaaattcaccctatatcttatagacccaaacgtg |
9619286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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