View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16904_low_90 (Length: 249)
Name: NF16904_low_90
Description: NF16904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16904_low_90 |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 11 - 230
Target Start/End: Original strand, 12507388 - 12507607
Alignment:
| Q |
11 |
cacagagaactcgcaaacgagataagaaccattgtaaaaaacgaaggcggggtaacaattcagtcgttagaaaaaatgtcgttagttaaatccgttgttt |
110 |
Q |
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| T |
12507388 |
cacaaagaactcgcaaacgagataagaaccattgtaaaaaacgaaggcggggtaacaattcagtcgttagaaaaaatgtcattagttaaatccgttgttt |
12507487 |
T |
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| Q |
111 |
atgaagttttgaggattgaacctgtcgttcgttatcaatatgcaaaagcaagagaagatttaattgtgaagagtcacgatgcagcttttgaaattaaaaa |
210 |
Q |
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| T |
12507488 |
atgaagttttgaggattgaacctgtcgttcgttatcaatatgcaaaagcaagagaagatttaattgtgaagagtcacgatgcagcttttgaaattaaaaa |
12507587 |
T |
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| Q |
211 |
gggtgagatgattttcgggt |
230 |
Q |
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|||||||||||||||||||| |
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| T |
12507588 |
gggtgagatgattttcgggt |
12507607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 11 - 222
Target Start/End: Original strand, 12492458 - 12492669
Alignment:
| Q |
11 |
cacagagaactcgcaaacgagataagaaccattgtaaaaaacgaaggcggggtaacaattcagtcgttagaaaaaatgtcgttagttaaatccgttgttt |
110 |
Q |
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|||| ||||||||||||||||||||||||| | |||||| | |||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||| | |
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| T |
12492458 |
cacaaagaactcgcaaacgagataagaaccgtggtaaaacaagaaggcggagtaacaattcagtcgttagaaaaaatgccgttagttaaatcagttgtct |
12492557 |
T |
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| Q |
111 |
atgaagttttgaggattgaacctgtcgttcgttatcaatatgcaaaagcaagagaagatttaattgtgaagagtcacgatgcagcttttgaaattaaaaa |
210 |
Q |
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| T |
12492558 |
atgaagcgatgcgaattgaacctgctgtgccttatcaatatgcaaaagcaagagaagatttaatcgtgaagagtcacgacgcggcttttgaaataaaaaa |
12492657 |
T |
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| Q |
211 |
gggtgagatgat |
222 |
Q |
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| T |
12492658 |
gggtgagatgat |
12492669 |
T |
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