View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16904_low_96 (Length: 238)
Name: NF16904_low_96
Description: NF16904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16904_low_96 |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 36941942 - 36942163
Alignment:
| Q |
1 |
catacacaagcaagagttttttcctttgatgacaccaaccaatcaattgcactagatttctatgccttaatttgctaattatcgttacttctgatgcaaa |
100 |
Q |
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| T |
36941942 |
catacacaagcaagagttttttcctttgatgacaccaaccaatcaattgcactagatttctatgccttaatttgctaattatcgttacttctgatgcaaa |
36942041 |
T |
|
| Q |
101 |
ttcctttatcccttgatgagaatcttctgacacactcttaatagcaacataagattttgtgtcttttagaaaacctctataaacacctccaaatcctcct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
36942042 |
ttcctttatcccttgatgagaatcttctgacacactcttaatagcaacataagattttgtgtcttttagaaagcctctataaacacctccaaatcctcct |
36942141 |
T |
|
| Q |
201 |
tgtcctagcttatgctcatctt |
222 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
36942142 |
tgtcctagcttatgctcatctt |
36942163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 36939176 - 36938955
Alignment:
| Q |
1 |
catacacaagcaagagttttttcctttgatgacaccaaccaatcaattgcactagatttctatgccttaatttgctaattatcgttacttctgatgcaaa |
100 |
Q |
| |
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|||| ||||| || || ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| || |
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| T |
36939176 |
catatacaagtaaaagcttttttctttcatgacaccaaccaatcaattgcactagatttctatgccttaatttgctaataattgttacttctgatgcgaa |
36939077 |
T |
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| Q |
101 |
ttcctttatcccttgatgagaatcttctgacacactcttaatagcaacataagattttgtgtcttttagaaaacctctataaacacctccaaatcctcct |
200 |
Q |
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| T |
36939076 |
ctcctttattccttgatgtgaatcttctgacaccctcttaacagcaacataagattttgtgtctttaagaaaacctctataaacacctccaaatcctcct |
36938977 |
T |
|
| Q |
201 |
tgtcctagcttatgctcatctt |
222 |
Q |
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||||||||||||| ||| |||| |
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| T |
36938976 |
tgtcctagcttatactcgtctt |
36938955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 207
Target Start/End: Complemental strand, 47871454 - 47871277
Alignment:
| Q |
30 |
tgacaccaaccaatcaattgcactagatttctatgccttaatttgctaattatcgttacttctgatgcaaattcctttatcccttgatgagaatcttctg |
129 |
Q |
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|||||||||||||| | ||| |||| ||| || ||||| | || |||||| ||| | ||||| | |||| |||||||||||||||| | ||| ||| || |
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| T |
47871454 |
tgacaccaaccaattagttgtactaaattcctgtgcctaagttggctaatgatcttcacttcagttgcatattcctttatcccttgtttagactctcttg |
47871355 |
T |
|
| Q |
130 |
acacactcttaatagcaacataagattttgtgtcttttagaaaacctctataaacacctccaaatcctccttgtccta |
207 |
Q |
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| | ||||| |||||||||| || | | ||||||| | | | ||| |||||||||| ||||| || |||||||||| |
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| T |
47871354 |
atattctctttatagcaacattggaatctatgtctttcaaatagcctttataaacaccaccaaaaccaccttgtccta |
47871277 |
T |
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