View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16904_low_97 (Length: 238)
Name: NF16904_low_97
Description: NF16904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16904_low_97 |
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Alignment Details
Target: chr3 (Bit Score: 147; Significance: 1e-77; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 50012337 - 50012119
Alignment:
| Q |
1 |
cacataattagatgaagttgatattacagggatgaacattttgatttaacttgctcaaaaacatattgaagttgctcaaaatttcaatctttatttnnnn |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
50012337 |
cacataattagatgaagttgatattacagggatgaacattttgatttaacttgctcaaaaatatattgaagttgctcaaaatttcaatctttatttaaaa |
50012238 |
T |
|
| Q |
101 |
nnnnnnnnnnnnnnnntcaatctttaatatttgaaaaacacttgcccacgttacattagaaagaagaacatgtgtatttcttaagctcttttagagaggg |
200 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
50012237 |
aaagaagaaaaaaaaatcaatctttaatatttggaaaacacttgcccacgttacattagaaagaagaacatatgtatttcttaagctcttttagagaggg |
50012138 |
T |
|
| Q |
201 |
aggaatgaaaaagaaatat |
219 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
50012137 |
aggaatgaaaaagaaatat |
50012119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 42066513 - 42066294
Alignment:
| Q |
1 |
cacataattagatgaagttgatattacagggatgaacattttgatttaacttgctcaaaaacatattgaagttgctcaaaatttcaatctttatttnnnn |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42066513 |
cacataattagatgaagttgatattacatggatgaacattttgatttaacttgctcaaaaacatattgaagttgctcaaaatttcaatctttatttaaaa |
42066414 |
T |
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| Q |
101 |
nnnnnnnnnnnnnnnn-tcaatctttaatatttgaaaaacacttgcccacgttacattagaaagaagaacatgtgtatttcttaagctcttttagagagg |
199 |
Q |
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||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42066413 |
aaagaagaaaaaaaaaatcaatctttaatatttggaaaacatttgcccacgttacattagaaagaagaacatgtgtatttcttaagctcttttagagagg |
42066314 |
T |
|
| Q |
200 |
gaggaatgaaaaagaaatat |
219 |
Q |
| |
|
|||||||||||||||||||| |
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| T |
42066313 |
gaggaatgaaaaagaaatat |
42066294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 4 - 219
Target Start/End: Original strand, 21444124 - 21444336
Alignment:
| Q |
4 |
ataattagatgaagttgatattacagggatgaacattttgatttaacttgctcaaaaacatattgaagttgctcaaaatttcaatctttatttnnnnnnn |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21444124 |
ataattagatgaagttgatattacagggatgaacattttgatttaacttgctcaaaaacatattgaagttgctcaaaatttcaatctttattt---aaaa |
21444220 |
T |
|
| Q |
104 |
nnnnnnnnnnnnntcaatctttaatatttgaaaaacacttgcccacgttacattagaaagaagaacatgtgtatttcttaagctcttttagagagggagg |
203 |
Q |
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||||||||||||||||| |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
21444221 |
aaagaaaaaaaaatcaatctttaatatttggaaaacacttgcccacgttacttcagaaagaagaacatgtgtatttcttaagctcttttagagagagagg |
21444320 |
T |
|
| Q |
204 |
aatgaaaaagaaatat |
219 |
Q |
| |
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|||||||||||||||| |
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|
| T |
21444321 |
aatgaaaaagaaatat |
21444336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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