View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16904_low_98 (Length: 236)
Name: NF16904_low_98
Description: NF16904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16904_low_98 |
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Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 16 - 219
Target Start/End: Original strand, 49331365 - 49331568
Alignment:
| Q |
16 |
caaaggtttggctgatttggatgctgcactttgtctttgcactgcaattaaggccaatgtgcttggaataaacttgaacgtacctctcaccctcacctgg |
115 |
Q |
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| T |
49331365 |
caaaggtttggctgatttggatgctgcactttgtctttgcactgcaattaaggccaatgtgcttggaataaacttgaacgtacctctcaccctcacctgg |
49331464 |
T |
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| Q |
116 |
atccttggtgcttgtcaaaaaacaatccctcctggttttcaatgtgcctaaggattcaaattaggttgtatctcattgtttcctaagtatgtaagtgcac |
215 |
Q |
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| T |
49331465 |
atccttggtgcttgtcaaaaaacaatccctcctggttttcaatgtgcctaaggattcaaattaggttgtatctcattgtttcctaagtatgtacgtgcac |
49331564 |
T |
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| Q |
216 |
tata |
219 |
Q |
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|||| |
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| T |
49331565 |
tata |
49331568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 20 - 217
Target Start/End: Original strand, 49329093 - 49329290
Alignment:
| Q |
20 |
ggtttggctgatttggatgctgcactttgtctttgcactgcaattaaggccaatgtgcttggaataaacttgaacgtacctctcaccctcacctggatcc |
119 |
Q |
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| T |
49329093 |
ggtttggctgatttggaggctgcactttgtctttgcactgcacttaaggctaacgtgcttgggatcaacctgaatgtgcctatcactctcagcttgctcc |
49329192 |
T |
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| Q |
120 |
ttggtgcttgtcaaaaaacaatccctcctggttttcaatgtgcctaaggattcaaattaggttgtatctcattgtttcctaagtatgtaagtgcacta |
217 |
Q |
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| T |
49329193 |
ttagtgcatgtcaaaaaaccgtccctcctggtttccaatgtccctaaggattccaattaggttgtgtctcattgttgaataagtatgtatgtgcacta |
49329290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 93
Target Start/End: Complemental strand, 2592105 - 2592030
Alignment:
| Q |
18 |
aaggtttggctgatttggatgctgcactttgtctttgcactgcaattaaggccaatgtgcttggaataaacttgaa |
93 |
Q |
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| T |
2592105 |
aaggtttggctgatttggacgcagcagtttgtctttgtaccgctattaaggctaatgttcttggtatcaacttgaa |
2592030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 93
Target Start/End: Complemental strand, 2578356 - 2578281
Alignment:
| Q |
18 |
aaggtttggctgatttggatgctgcactttgtctttgcactgcaattaaggccaatgtgcttggaataaacttgaa |
93 |
Q |
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| T |
2578356 |
aaggtttggctgatttggacgcagcagtttgtctttgtaccgctattaaggctaacgttcttggtatcaacttgaa |
2578281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 93
Target Start/End: Complemental strand, 2599859 - 2599784
Alignment:
| Q |
18 |
aaggtttggctgatttggatgctgcactttgtctttgcactgcaattaaggccaatgtgcttggaataaacttgaa |
93 |
Q |
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||||||||||||||||||| || ||| |||||||||| || || |||||||| || || ||||| || |||||||| |
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| T |
2599859 |
aaggtttggctgatttggacgcagcagtttgtctttgtaccgctattaaggctaacgttcttggtatcaacttgaa |
2599784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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