View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16904_low_99 (Length: 236)

Name: NF16904_low_99
Description: NF16904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16904_low_99
NF16904_low_99
[»] scaffold0089 (3 HSPs)
scaffold0089 (13-90)||(37022-37099)
scaffold0089 (144-200)||(36912-36968)
scaffold0089 (202-236)||(36305-36339)
[»] chr6 (5 HSPs)
chr6 (13-90)||(20516038-20516115)
chr6 (144-200)||(20515928-20515984)
chr6 (144-196)||(33291056-33291108)
chr6 (47-83)||(33290959-33290995)
chr6 (202-236)||(20515321-20515355)
[»] chr5 (14 HSPs)
chr5 (13-90)||(17937556-17937633)
chr5 (13-90)||(32667875-32667952)
chr5 (13-90)||(36518087-36518164)
chr5 (13-90)||(20031754-20031830)
chr5 (144-205)||(32667760-32667821)
chr5 (144-200)||(20031644-20031700)
chr5 (144-196)||(14486362-14486414)
chr5 (148-200)||(17939821-17939873)
chr5 (144-200)||(17006077-17006133)
chr5 (144-205)||(31311017-31311078)
chr5 (47-90)||(17005980-17006023)
chr5 (202-236)||(20031036-20031070)
chr5 (47-83)||(14486475-14486511)
chr5 (202-236)||(17940451-17940485)
[»] chr2 (5 HSPs)
chr2 (13-90)||(12624555-12624632)
chr2 (144-200)||(33734279-33734335)
chr2 (144-200)||(22839608-22839664)
chr2 (20-69)||(22839739-22839788)
chr2 (47-83)||(33734182-33734218)
[»] chr3 (3 HSPs)
chr3 (13-90)||(13369032-13369108)
chr3 (144-200)||(13369162-13369218)
chr3 (202-236)||(13369791-13369825)
[»] chr8 (2 HSPs)
chr8 (144-200)||(26864475-26864531)
chr8 (47-83)||(26864592-26864628)
[»] chr4 (2 HSPs)
chr4 (144-200)||(49943489-49943545)
chr4 (20-81)||(17524694-17524754)
[»] chr7 (3 HSPs)
chr7 (144-196)||(22941833-22941885)
chr7 (144-200)||(27285619-27285675)
chr7 (47-83)||(27285522-27285558)
[»] scaffold0426 (2 HSPs)
scaffold0426 (20-77)||(1552-1609)
scaffold0426 (144-200)||(1438-1494)
[»] chr1 (1 HSPs)
chr1 (144-200)||(18502002-18502058)


Alignment Details
Target: scaffold0089 (Bit Score: 78; Significance: 2e-36; HSPs: 3)
Name: scaffold0089
Description:

Target: scaffold0089; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 13 - 90
Target Start/End: Complemental strand, 37099 - 37022
Alignment:
Q  13 aatatagtctcctgtgtcatataatatgaaacgaaaaattaattaacatagaatttccagcacaaccaattacgattt 90  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37099 aatatagtctcctgtgtcatataatatgaaacgaaaaattaattaacatagaatttccagcacaaccaattacgattt 37022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0089; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 144 - 200
Target Start/End: Complemental strand, 36968 - 36912
Alignment:
Q  144 ctcactaagatactcgaccatacaggttgcccaatcctcctcgacctgaactagctt 200  Q
    |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||    
T  36968 ctcactaagatactggaccataaaggttgcccaatcctcctcgacctgaactagctt 36912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0089; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 236
Target Start/End: Complemental strand, 36339 - 36305
Alignment:
Q  202 tattgaaggaaaacagagacaacggcggcaaccac 236  Q
    ||||||||||||||||||||||||||||| |||||    
T  36339 tattgaaggaaaacagagacaacggcggcgaccac 36305  T

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Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 13 - 90
Target Start/End: Complemental strand, 20516115 - 20516038
Alignment:
Q  13 aatatagtctcctgtgtcatataatatgaaacgaaaaattaattaacatagaatttccagcacaaccaattacgattt 90  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20516115 aatatagtctcctgtgtcatataatatgaaacgaaaaattaattaacatagaatttccagcacaaccaattacgattt 20516038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 144 - 200
Target Start/End: Complemental strand, 20515984 - 20515928
Alignment:
Q  144 ctcactaagatactcgaccatacaggttgcccaatcctcctcgacctgaactagctt 200  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  20515984 ctcactaagatactcgaccataaaggttgcccaatcctcctcgacctgaactagctt 20515928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 144 - 196
Target Start/End: Original strand, 33291056 - 33291108
Alignment:
Q  144 ctcactaagatactcgaccatacaggttgcccaatcctcctcgacctgaacta 196  Q
    |||||||||||||||||||| | |||||||||||||||||||||||| |||||    
T  33291056 ctcactaagatactcgaccacaaaggttgcccaatcctcctcgacctcaacta 33291108  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 83
Target Start/End: Original strand, 33290959 - 33290995
Alignment:
Q  47 aaaattaattaacatagaatttccagcacaaccaatt 83  Q
    |||||||||||||||| ||||||||||||||||||||    
T  33290959 aaaattaattaacataaaatttccagcacaaccaatt 33290995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 236
Target Start/End: Complemental strand, 20515355 - 20515321
Alignment:
Q  202 tattgaaggaaaacagagacaacggcggcaaccac 236  Q
    ||||||||||||||||||||||||||||| |||||    
T  20515355 tattgaaggaaaacagagacaacggcggcgaccac 20515321  T

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Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 13 - 90
Target Start/End: Original strand, 17937556 - 17937633
Alignment:
Q  13 aatatagtctcctgtgtcatataatatgaaacgaaaaattaattaacatagaatttccagcacaaccaattacgattt 90  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17937556 aatatagtctcctgtgtcatataatatgaaacgaaaaattaattaacatagaatttccagcacaaccaattacgattt 17937633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 13 - 90
Target Start/End: Complemental strand, 32667952 - 32667875
Alignment:
Q  13 aatatagtctcctgtgtcatataatatgaaacgaaaaattaattaacatagaatttccagcacaaccaattacgattt 90  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32667952 aatatagtctcctatgtcatataatatgaaacgaaaaattaattaacatagaatttccagcacaaccaattacgattt 32667875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 13 - 90
Target Start/End: Complemental strand, 36518164 - 36518087
Alignment:
Q  13 aatatagtctcctgtgtcatataatatgaaacgaaaaattaattaacatagaatttccagcacaaccaattacgattt 90  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||    
T  36518164 aatatagtctcctgtgtcatataatatgaaacaaaaaattaattaacatagaattttcatcacaaccaattacgattt 36518087  T

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Target: chr5; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 13 - 90
Target Start/End: Complemental strand, 20031830 - 20031754
Alignment:
Q  13 aatatagtctcctgtgtcatataatatgaaacgaaaaa-ttaattaacatagaatttccagcacaaccaattacgattt 90  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||  |||||||||||||||||||||||||||||    
T  20031830 aatatagtctcctgtgtcatataatatgaaacgaaaaatttaattaac--agaatttccagcacaaccaattacgattt 20031754  T

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Target: chr5; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 144 - 205
Target Start/End: Complemental strand, 32667821 - 32667760
Alignment:
Q  144 ctcactaagatactcgaccatacaggttgcccaatcctcctcgacctgaactagcttctatt 205  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||    
T  32667821 ctcactaagatactcgaccataaaggttgcccaatcctcctcgacctgaactagcttatatt 32667760  T

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Target: chr5; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 144 - 200
Target Start/End: Complemental strand, 20031700 - 20031644
Alignment:
Q  144 ctcactaagatactcgaccatacaggttgcccaatcctcctcgacctgaactagctt 200  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  20031700 ctcactaagatactcgaccataaaggttgcccaatcctcctcgacctgaactagctt 20031644  T

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Target: chr5; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 144 - 196
Target Start/End: Complemental strand, 14486414 - 14486362
Alignment:
Q  144 ctcactaagatactcgaccatacaggttgcccaatcctcctcgacctgaacta 196  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| |||||    
T  14486414 ctcactaagatactcgaccataaaggttgcccaatcctcctcgacctcaacta 14486362  T

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Target: chr5; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 148 - 200
Target Start/End: Original strand, 17939821 - 17939873
Alignment:
Q  148 ctaagatactcgaccatacaggttgcccaatcctcctcgacctgaactagctt 200  Q
    |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  17939821 ctaagatactcgaccataaaggttgtccaatcctcctcgacctgaactagctt 17939873  T

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Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 144 - 200
Target Start/End: Original strand, 17006077 - 17006133
Alignment:
Q  144 ctcactaagatactcgaccatacaggttgcccaatcctcctcgacctgaactagctt 200  Q
    ||||||||||||||||||| || ||||||| |||||||||||||||| |||||||||    
T  17006077 ctcactaagatactcgaccgtaaaggttgcacaatcctcctcgacctcaactagctt 17006133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 144 - 205
Target Start/End: Complemental strand, 31311078 - 31311017
Alignment:
Q  144 ctcactaagatactcgaccatacaggttgcccaatcctcctcgacctgaactagcttctatt 205  Q
    |||||||| | ||||||||||| ||||| |||||||||||||||||| ||||||||| ||||    
T  31311078 ctcactaatacactcgaccataaaggtttcccaatcctcctcgacctcaactagcttatatt 31311017  T

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Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 90
Target Start/End: Original strand, 17005980 - 17006023
Alignment:
Q  47 aaaattaattaacatagaatttccagcacaaccaattacgattt 90  Q
    |||||||||||||||| |||||||||||||||||||| ||||||    
T  17005980 aaaattaattaacataaaatttccagcacaaccaattgcgattt 17006023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 202 - 236
Target Start/End: Complemental strand, 20031070 - 20031036
Alignment:
Q  202 tattgaaggaaaacagagacaacggcggcaaccac 236  Q
    |||||||||||||||||||||||||||||||||||    
T  20031070 tattgaaggaaaacagagacaacggcggcaaccac 20031036  T

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Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 83
Target Start/End: Complemental strand, 14486511 - 14486475
Alignment:
Q  47 aaaattaattaacatagaatttccagcacaaccaatt 83  Q
    |||||||||||||||| ||||||||||||||||||||    
T  14486511 aaaattaattaacataaaatttccagcacaaccaatt 14486475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 236
Target Start/End: Original strand, 17940451 - 17940485
Alignment:
Q  202 tattgaaggaaaacagagacaacggcggcaaccac 236  Q
    ||||||||||||||||||||||||||||| |||||    
T  17940451 tattgaaggaaaacagagacaacggcggcgaccac 17940485  T

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Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 13 - 90
Target Start/End: Original strand, 12624555 - 12624632
Alignment:
Q  13 aatatagtctcctgtgtcatataatatgaaacgaaaaattaattaacatagaatttccagcacaaccaattacgattt 90  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  12624555 aatatagtctcctgtgtcatatagtatgaaacgaaaaattaattaacatagaatttccaacacaaccaattacgattt 12624632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 144 - 200
Target Start/End: Original strand, 33734279 - 33734335
Alignment:
Q  144 ctcactaagatactcgaccatacaggttgcccaatcctcctcgacctgaactagctt 200  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  33734279 ctcactaagatactcgaccataaaggttgcccaatcctcctcgacctcaactagctt 33734335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 144 - 200
Target Start/End: Complemental strand, 22839664 - 22839608
Alignment:
Q  144 ctcactaagatactcgaccatacaggttgcccaatcctcctcgacctgaactagctt 200  Q
    |||||||| ||||||||||||| | ||| |||||||||||||||||| |||||||||    
T  22839664 ctcactaatatactcgaccataaaagtttcccaatcctcctcgacctcaactagctt 22839608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 22839788 - 22839739
Alignment:
Q  20 tctcctgtgtcatataatatgaaacgaaaaattaattaacatagaatttc 69  Q
    ||||||||||| ||||| ||||||||||||| |||||||| |||||||||    
T  22839788 tctcctgtgtcgtataacatgaaacgaaaaactaattaacgtagaatttc 22839739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 83
Target Start/End: Original strand, 33734182 - 33734218
Alignment:
Q  47 aaaattaattaacatagaatttccagcacaaccaatt 83  Q
    |||||||||||||||| ||||||||||||||||||||    
T  33734182 aaaattaattaacataaaatttccagcacaaccaatt 33734218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 3e-29; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 13 - 90
Target Start/End: Original strand, 13369032 - 13369108
Alignment:
Q  13 aatatagtctcctgtgtcatataatatgaaacgaaaaattaattaacatagaatttccagcacaaccaattacgattt 90  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  13369032 aatatagtctcctgtg-catataatatgaaacgaaaaattaattaacatagaatttccagcacaaccaattatgattt 13369108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 144 - 200
Target Start/End: Original strand, 13369162 - 13369218
Alignment:
Q  144 ctcactaagatactcgaccatacaggttgcccaatcctcctcgacctgaactagctt 200  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  13369162 ctcactaagatactcgaccataaaggttgcccaatcctcctcgacctgaactagctt 13369218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 236
Target Start/End: Original strand, 13369791 - 13369825
Alignment:
Q  202 tattgaaggaaaacagagacaacggcggcaaccac 236  Q
    ||||||||||||||||||||||||||||| |||||    
T  13369791 tattgaaggaaaacagagacaacggcggcgaccac 13369825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 144 - 200
Target Start/End: Complemental strand, 26864531 - 26864475
Alignment:
Q  144 ctcactaagatactcgaccatacaggttgcccaatcctcctcgacctgaactagctt 200  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  26864531 ctcactaagatactcgaccataaaggttgcccaatcctcctcgacctcaactagctt 26864475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 83
Target Start/End: Complemental strand, 26864628 - 26864592
Alignment:
Q  47 aaaattaattaacatagaatttccagcacaaccaatt 83  Q
    |||||||||||||||| ||||||||| ||||||||||    
T  26864628 aaaattaattaacataaaatttccagtacaaccaatt 26864592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 144 - 200
Target Start/End: Original strand, 49943489 - 49943545
Alignment:
Q  144 ctcactaagatactcgaccatacaggttgcccaatcctcctcgacctgaactagctt 200  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  49943489 ctcactaagatactcgaccataaaggttgcccaatcctcctcgacctcaactagctt 49943545  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 81
Target Start/End: Original strand, 17524694 - 17524754
Alignment:
Q  20 tctcctgtgtcatataatatgaaacgaaaaattaattaacatagaatttccagcacaaccaa 81  Q
    |||| |||||| |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  17524694 tctcttgtgtcgtataatatgaaacgaaaaattaattaacat-gaatttccagcacaaccaa 17524754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 9e-17; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 144 - 196
Target Start/End: Complemental strand, 22941885 - 22941833
Alignment:
Q  144 ctcactaagatactcgaccatacaggttgcccaatcctcctcgacctgaacta 196  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| |||||    
T  22941885 ctcactaagatactcgaccataaaggttgcccaatcctcctcgacctcaacta 22941833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 144 - 200
Target Start/End: Original strand, 27285619 - 27285675
Alignment:
Q  144 ctcactaagatactcgaccatacaggttgcccaatcctcctcgacctgaactagctt 200  Q
    |||||||||| ||||||||||| |||||| ||||||||||||||||| |||||||||    
T  27285619 ctcactaagacactcgaccataaaggttgtccaatcctcctcgacctcaactagctt 27285675  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 83
Target Start/End: Original strand, 27285522 - 27285558
Alignment:
Q  47 aaaattaattaacatagaatttccagcacaaccaatt 83  Q
    |||||||||||||||| ||||| ||||||||||||||    
T  27285522 aaaattaattaacataaaattttcagcacaaccaatt 27285558  T

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Target: scaffold0426 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: scaffold0426
Description:

Target: scaffold0426; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 1609 - 1552
Alignment:
Q  20 tctcctgtgtcatataatatgaaacgaaaaattaattaacatagaatttccagcacaa 77  Q
    ||||||||||| ||||| |||||||||||||||||||||||| |||||| ||||||||    
T  1609 tctcctgtgtcgtataaaatgaaacgaaaaattaattaacatcgaattttcagcacaa 1552  T

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Target: scaffold0426; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 144 - 200
Target Start/End: Complemental strand, 1494 - 1438
Alignment:
Q  144 ctcactaagatactcgaccatacaggttgcccaatcctcctcgacctgaactagctt 200  Q
    |||||||| ||||| ||||||| |||||||||||||||||||||||| |||||||||    
T  1494 ctcactaatatacttgaccataaaggttgcccaatcctcctcgacctcaactagctt 1438  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 144 - 200
Target Start/End: Original strand, 18502002 - 18502058
Alignment:
Q  144 ctcactaagatactcgaccatacaggttgcccaatcctcctcgacctgaactagctt 200  Q
    |||||||||||||||||||||| ||||||||||||||||||| | || |||||||||    
T  18502002 ctcactaagatactcgaccataaaggttgcccaatcctcctcaaactcaactagctt 18502058  T

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