View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16905_high_10 (Length: 441)
Name: NF16905_high_10
Description: NF16905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16905_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 283; Significance: 1e-158; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 10 - 304
Target Start/End: Original strand, 31717434 - 31717728
Alignment:
| Q |
10 |
attattctatgcatatgttaaacattttgaacgatattaatgaaattttgagaaaaagttgaagacttgtgacaagtacaacacattccagtttcttttt |
109 |
Q |
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| T |
31717434 |
attattctatgcatatgttaaacattttgaacgatattaatgaaattttgataaaaagttgaagacttgtgacaagtacaacacattccagtttcttttt |
31717533 |
T |
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| Q |
110 |
tctatcgattgtttccaagtttggctgttctttttcttgatgataggacaaaaacattcttgaagaatttaaggcaaaaaatcaggcaagtactcttcaa |
209 |
Q |
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| T |
31717534 |
tctatcgattgtttccaagtttggctgttctttttcttgatgataggacaaaaacattcttgaagaattaaaggcaaaaaatcaggcaagtactcttcaa |
31717633 |
T |
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| Q |
210 |
tttgtggagaatgcacatatagaaggaactgtttttcaaaggtatacaatatacgcacatatagaagtgacttatactattatccctctcttcca |
304 |
Q |
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| T |
31717634 |
tttgtggagaatgcacatatagaaggaactgtttttcaaaggtatacaatatatgcacatatagaagtgacttatactattatccctctcttcca |
31717728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 17 - 260
Target Start/End: Original strand, 31705022 - 31705268
Alignment:
| Q |
17 |
tatgcatatgttaaacattttgaacgatattaatgaaattttgagaaaaagttgaagacttgtgacaagtacaacacatt----ccagtttcttttttct |
112 |
Q |
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| T |
31705022 |
tatgcatacgttgaacattctgaaagatattcat-aaattttgagaaaa-gttgacgacttctgaagcgtacaacacattaattccaatttcctttttct |
31705119 |
T |
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| Q |
113 |
atcgattgtttccaagtttggctgttctttttc-ttgatgataggacaaaaacattcttgaagaatttaaggcaaaaaatcaggcaagtactcttcaatt |
211 |
Q |
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| T |
31705120 |
ttggattgtttacaagtttggctattcttttttatttatgataggacaaaaatattcttgaagaatttaaagcaaaaaatcaagcaagtactcttcaatt |
31705219 |
T |
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| Q |
212 |
tgtggagaatgcacatatagaaggaactgtttttcaaaggtatacaata |
260 |
Q |
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| T |
31705220 |
tgtggagaatgcaagcatagaaggaactgtatttgaaaggtaaacaata |
31705268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 140 - 259
Target Start/End: Original strand, 31682154 - 31682273
Alignment:
| Q |
140 |
tttttcttgatgataggacaaaaacattcttgaagaatttaaggcaaaaaatcaggcaagtactcttcaatttgtggagaatgcacatatagaaggaact |
239 |
Q |
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| T |
31682154 |
tttttcttgatcataggacaataatattcttgaagaatttagtgcaagaaatcaggcaagtagccttcaatttgtgaagaatgcctatatagaaggatct |
31682253 |
T |
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| Q |
240 |
gtttttcaaaggtatacaat |
259 |
Q |
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| T |
31682254 |
gtatttcagaggtaaacaat |
31682273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 125 - 253
Target Start/End: Original strand, 31689576 - 31689703
Alignment:
| Q |
125 |
caagtttggctgttctttttcttgatgataggacaaaaacattcttgaagaatttaaggcaaaaaatcaggcaagtactcttcaatttgtggagaatgca |
224 |
Q |
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| T |
31689576 |
caagtttggctgtt-tttctcttgatgataggacaatgatattcttgaagaatttagtgcaagaagtcaggcaagtagccttcaatttgtggagaatacg |
31689674 |
T |
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| Q |
225 |
catatagaaggaactgtttttcaaaggta |
253 |
Q |
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| T |
31689675 |
aaaatagaaggatctgtatttcaaaggta |
31689703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 125 - 258
Target Start/End: Original strand, 31694635 - 31694768
Alignment:
| Q |
125 |
caagtttggctgttctttttcttgatgataggacaaaaacattcttgaagaatttaaggcaaaaaatcaggcaagtactcttcaatttgtggagaatgca |
224 |
Q |
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| T |
31694635 |
caagtttggttgttccttttcttgatgataggacaacgatattcttgaagattttgcagcagaaaatcaggctagcagccttcaatttgtggagaacgtg |
31694734 |
T |
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| Q |
225 |
catatagaaggaactgtttttcaaaggtatacaa |
258 |
Q |
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| T |
31694735 |
aatataaaagaatctgtatttcaaaggtaaacaa |
31694768 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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