View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16905_high_11 (Length: 424)
Name: NF16905_high_11
Description: NF16905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16905_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 379; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 18 - 412
Target Start/End: Complemental strand, 1855806 - 1855412
Alignment:
| Q |
18 |
ctatttgtagtttgggctatttgacatgattcatttgtaacaacccaattaacaaccatagggaaagtgttataaggcagtttcttgatatgttctacag |
117 |
Q |
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| T |
1855806 |
ctatttgtagtttgggctattcgacatgattcatttgtaacaacccaattaacaaccatagggaaagtgttataaggcagtttcttaatatgttctacag |
1855707 |
T |
|
| Q |
118 |
aaaaattataggatccttgttttgcaataaaggaatagctacaagaattttccatagatagtgtagaaggtgagaatttaaatgcttctatggtgatatt |
217 |
Q |
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| T |
1855706 |
aaaaattataggatccttgttttgcaataaaggaatagctacaagaattttccatagatagtgtagaaggtgagaatttaaatgcttgtatggtgatatt |
1855607 |
T |
|
| Q |
218 |
tttcataagtggaggaatatcaacttcacaacaacctaaacctgtgcactttccagtgttatttccaattaccattttagtatcaaaatcataacatctt |
317 |
Q |
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| T |
1855606 |
tttcataagtggaggaatatcaacttcacaacaacctaaacctgtgcactttccagtgttatttccaattaccattttagtatcaaaatcataacatctt |
1855507 |
T |
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| Q |
318 |
gttaagcatcctgtagaataagtggcacccttgaaattactgttgagatatccgtaactgtcacaaccaactgttatgaatttgttgtctgtgct |
412 |
Q |
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| T |
1855506 |
gttaagcatcctgtagaataagtggcacccttgaaattactgttgagatatccgaaactgtcacaaccaactgttatgaatttgttgtctgtgct |
1855412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 18 - 403
Target Start/End: Original strand, 1817385 - 1817770
Alignment:
| Q |
18 |
ctatttgtagtttgggctatttgacatgattcatttgtaacaacccaattaacaaccatagggaaagtgttataaggcagtttcttgatatgttctacag |
117 |
Q |
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| T |
1817385 |
ctatttgtagtgtgagctatttgacatgattcatttgtaatagcccaattaataaccaaggggaaagtttcattaggtagattatttatatggtctacag |
1817484 |
T |
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| Q |
118 |
aaaaattataggatccttgttttgcaataaaggaatagctacaagaattttccatagatagtgtagaaggtgagaatttaaatgcttctatggtgatatt |
217 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| || ||||||||||||||| || |||||||| |
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| T |
1817485 |
aaaatttataggatccttgttttgcaataaaggaatagctacaagaattttccttagatagggtagaagttgggaatttaaatgcttcaattgtgatatt |
1817584 |
T |
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| Q |
218 |
tttcataagtggaggaatatcaacttcacaacaacctaaacctgtgcactttccagtgttatttccaattaccattttagtatcaaaatcataacatctt |
317 |
Q |
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| T |
1817585 |
tttcatactagaaggaatatccacttggcaacaccctaaacctgtgcattttccagtgttattcccaattactattttaggtttaaaatcataacatctt |
1817684 |
T |
|
| Q |
318 |
gttaagcatcctgtagaataagtggcacccttgaaattactgttgagatatccgtaactgtcacaaccaactgttatgaatttgtt |
403 |
Q |
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|||||||| ||||| ||||||||| |||| ||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
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| T |
1817685 |
gttaagcaccctgttgaataagtgccacctgtgaaattactgttgagatatccgtaactgtcgcaaccaacggttatgaatttgtt |
1817770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 307 - 412
Target Start/End: Original strand, 9220511 - 9220616
Alignment:
| Q |
307 |
cataacatcttgttaagcatcctgtagaataagtggcacccttgaaattactgttgagatatccgtaactgtcacaaccaactgttatgaatttgttgtc |
406 |
Q |
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| T |
9220511 |
cataacatcttgttaagcaaccggttgaatatgtttcttcgttgtaaatactgttgagataaccgtaactgtcacaaccaaccgttatgaacttgttttc |
9220610 |
T |
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| Q |
407 |
tgtgct |
412 |
Q |
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| T |
9220611 |
agtgct |
9220616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 356 - 403
Target Start/End: Original strand, 9158110 - 9158157
Alignment:
| Q |
356 |
actgttgagatatccgtaactgtcacaaccaactgttatgaatttgtt |
403 |
Q |
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| T |
9158110 |
actgttgagataaccgtaactgtcacaaccaaccgttacgaacttgtt |
9158157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 155; Significance: 4e-82; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 134 - 412
Target Start/End: Complemental strand, 37567171 - 37566880
Alignment:
| Q |
134 |
ttgttttgcaataaaggaatagctacaagaattttccatagatagtgtagaaggtgagaatttaaatgcttctatggtgatatttttcataagtggagga |
233 |
Q |
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| T |
37567171 |
ttgttttgcaataaaggaatagctacaagaattttccatagacagtgtagaagttgggaatttaaatgtttcaattgtgatatttttcatactagaagga |
37567072 |
T |
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| Q |
234 |
atatcaacttcacaacaacctaaacct------gtgcactttccagtgttatttccaattaccattttagtatcaaaatcataacatcttgttaa----- |
322 |
Q |
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| T |
37567071 |
atatccacttggcaacaccctaaacctaggcctgtgcattttccagtgttattcccagttaccattttaggatcaaaatcataacatcttgttaactgtt |
37566972 |
T |
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| Q |
323 |
--gcatcctgtagaataagtggcacccttgaaattactgttgagatatccgtaactgtcacaaccaactgttatgaatttgttgtctgtgct |
412 |
Q |
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| T |
37566971 |
aagcatcctgtagaataagtggcacccttgaaattactgttgagatatccgtaactgtcgcaaccaacggttatgaatttgttttccgtgct |
37566880 |
T |
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