View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16905_high_13 (Length: 394)
Name: NF16905_high_13
Description: NF16905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16905_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 11 - 377
Target Start/End: Complemental strand, 55577452 - 55577086
Alignment:
| Q |
11 |
cacagattaaactaccttttagtattcttgtccttgtccttcttcttcctcttcatcatcattattttcctcggttgcctccatatcctaggcagagaga |
110 |
Q |
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| T |
55577452 |
cacagattaaactaccttttggtattcttgtccttgtccttcttcttcctcttcatcatcattattttcctcggttgcctccatatcctaggcagagaga |
55577353 |
T |
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| Q |
111 |
gaacaactaattaacataattgagagnnnnnnngaaacaactacgtaaataagagtataataatgtatgtatctatcttatgaaaatagttgtatccgca |
210 |
Q |
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| T |
55577352 |
gaacaactaattaacataattgagagaaaaaaagaaacaactacgtaaataagagtataataatgtatgtatctatcttatgaaaatagttgtatccgca |
55577253 |
T |
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| Q |
211 |
aaacgcaatacagaatttcaggtttttcagtttgaagagaactgcaaaaaatgaatagagagacataataagcaagaaagtaagagaggacttacagtgg |
310 |
Q |
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| T |
55577252 |
aaacgcaatacagaatttcaggtttttcagtttgaagagaactgcaaaaaatgaatagagagacagaataagcaagaaagtaagagaggacttacagtgg |
55577153 |
T |
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| Q |
311 |
aatcttcttcttcttgctaaccgagaaagaacgaagacgagtgatcttcatgctaactgagattggt |
377 |
Q |
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| T |
55577152 |
aatcttcttcttcttgctaaccgagaaagaacgaagacgagtgatcttcatgctaactgagattggt |
55577086 |
T |
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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 264 - 306
Target Start/End: Original strand, 10604013 - 10604055
Alignment:
| Q |
264 |
aatagagagacataataagcaagaaagtaagagaggacttaca |
306 |
Q |
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| T |
10604013 |
aatagagagacaaactaagcaagaaagtaagagaggacttaca |
10604055 |
T |
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