View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16905_high_14 (Length: 384)
Name: NF16905_high_14
Description: NF16905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16905_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 19 - 367
Target Start/End: Complemental strand, 51855093 - 51854744
Alignment:
| Q |
19 |
gaaggatcaaagagcaaaatgtagctaagtttatatcaacactaactggttgaaacaatgaaaaactaacgttcatggcacatgctacttcaatagacac |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| | |||||||||||||||||||||||||||| |
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| T |
51855093 |
gaaggatcaaagagcaaaatgtagctaagtttatatcaacactagctggttgaaaaaatgaaaaactaatggtcatggcacatgctacttcaatagacac |
51854994 |
T |
|
| Q |
119 |
tacac-acactagcttttgttgctgttgttaatcaaattggtggtgacggccaagtcatttgtccaattcaattttattttcatagttagaaaatcttca |
217 |
Q |
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||| | ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51854993 |
taccctacactagcttttgttgctgttgttaatcaaattggtggtgatggccaagtcatttgtccaattcaattttattttcatagttagaaaatcttca |
51854894 |
T |
|
| Q |
218 |
agagccaaatgcctaattcagtttcatagttggataagctcaagtactattgctagaccaatatgaaggagcaatactctgcaacattttgtcaaagcga |
317 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51854893 |
agagctaaatgcctaattcagtttcatagttggataagctcaagtactatttctagaccaatatgaaggagcaatactctgcaacattttgtcaaagcga |
51854794 |
T |
|
| Q |
318 |
aagaaattgaatatgggtgatatgctttgacagtcgatcaacaacctttg |
367 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51854793 |
aagaaattgaatatgggtgatatgctttgacagtcgatcaacaacctttg |
51854744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 19 - 367
Target Start/End: Complemental strand, 8944328 - 8943979
Alignment:
| Q |
19 |
gaaggatcaaagagcaaaatgtagctaagtttatatcaacactaactggttgaaacaatgaaaaactaacgttcatggcacatgctacttcaatagacac |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||| |
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| T |
8944328 |
gaaggatcaaagagcaaaatgtagctaagtttatatcaacactagctggttgaaacaatgaaaaactaatggtcatggcacatgctacttcaatagacac |
8944229 |
T |
|
| Q |
119 |
tacac-acactagcttttgttgctgttgttaatcaaattggtggtgacggccaagtcatttgtccaattcaattttattttcatagttagaaaatcttca |
217 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8944228 |
tacactacactagcttttgttgctgttgttaatcaaattggtggtgatggctaagtcatttgtccaattcaattttattttcatagttagaaaatcttca |
8944129 |
T |
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| Q |
218 |
agagccaaatgcctaattcagtttcatagttggataagctcaagtactattgctagaccaatatgaaggagcaatactctgcaacattttgtcaaagcga |
317 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |
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| T |
8944128 |
agagctaaatgcctaattcagtttcatagttggataatctcaagtactattgctagatcaatatgaaggagcaatactctgcaacatttagtcaaagcga |
8944029 |
T |
|
| Q |
318 |
aagaaattgaatatgggtgatatgctttgacagtcgatcaacaacctttg |
367 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
8944028 |
aagaaattgaatatgggtgatatgctttgacagtcgataaacaacctttg |
8943979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 19 - 351
Target Start/End: Original strand, 26887331 - 26887664
Alignment:
| Q |
19 |
gaaggatcaaagagcaaaatgtagctaagtttatatcaacactaactggttgaaacaatgaaaaactaacgttcatggcacatgctacttcaatagacac |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||| |||||||||||||||||||| |
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| T |
26887331 |
gaaggatcaaagagcaaaatgtagctaagtttatatcaacactagctggttgaaacaatgaaaaactaatggtcatggcgcatgctacttcaatagacac |
26887430 |
T |
|
| Q |
119 |
tacac-acactagcttttgttgctgttgttaatcaaattggtggtgacggccaagtcatttgtccaattcaattttattttcatagttagaaaatcttca |
217 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||| ||||| |
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| T |
26887431 |
tacactacactagcttttgttgctgttgttaatcaaattggtggtgatggctaagtcatttgtccaattcaattttattttcatagttaaaaaaccttca |
26887530 |
T |
|
| Q |
218 |
agagccaaatgcctaattcagtttcatagttggataagctcaagtactattgctagaccaatatgaaggagcaatactctgcaacattttgtcaaagcga |
317 |
Q |
| |
|
||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26887531 |
agaactaaatgcctaattcagtttcatagttggataagctcaagtactattgctagaccaatatgaaggagcaatactctgcaacattttgtcaaagcga |
26887630 |
T |
|
| Q |
318 |
aagaaattgaatatgggtgatatgctttgacagt |
351 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
26887631 |
aagaaattgaatatgggtgatatgctttgacagt |
26887664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 307 - 351
Target Start/End: Original strand, 26887667 - 26887710
Alignment:
| Q |
307 |
tgtcaaagcgaaagaaattgaatatgggtgatatgctttgacagt |
351 |
Q |
| |
|
|||||||||||||||| |||||||||| ||||||||||||||||| |
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| T |
26887667 |
tgtcaaagcgaaagaa-ttgaatatggatgatatgctttgacagt |
26887710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 19 - 256
Target Start/End: Complemental strand, 21989069 - 21988833
Alignment:
| Q |
19 |
gaaggatcaaagagcaaaatgtagctaagtttatatcaacactaactggttgaaacaatgaaaaactaacgttcatggcacatgctacttcaatagacac |
118 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| ||||| ||||| ||||| | |||||||| | | | |||||| ||||||||||| ||||| |
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| T |
21989069 |
gaaggatcaaagagtcaaatgtagctaagtttatatcagcactagctggtggaaactaagaaaaactgatggttatggcatatgctacttcagcggacac |
21988970 |
T |
|
| Q |
119 |
tacacacactagcttttgttgctgttgttaatcaaattggtggtgacggccaagtcatttgtccaattcaattttattttcatagttagaaaatcttcaa |
218 |
Q |
| |
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||| |||||| |||| ||||||||||||||||||| ||||||||| ||| ||| |||||| | |||||||||||| |||||||||||||||| | || | |
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| T |
21988969 |
tacg-acactaactttagttgctgttgttaatcaaactggtggtgatggctaagccatttgcctaattcaattttaatttcatagttagaaaaccatcga |
21988871 |
T |
|
| Q |
219 |
gagccaaatgcctaattcagtttcatagttggataagc |
256 |
Q |
| |
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|||| |||||||||||||| ||| ||||||||| |||| |
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| T |
21988870 |
gagctaaatgcctaattcaattttatagttggaaaagc |
21988833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 123 - 163
Target Start/End: Complemental strand, 1748653 - 1748613
Alignment:
| Q |
123 |
cacactagcttttgttgctgttgttaatcaaattggtggtg |
163 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||| |||||| |
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|
| T |
1748653 |
cacactagctttagttgttgttgttaatcaaattagtggtg |
1748613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 123 - 163
Target Start/End: Original strand, 20686641 - 20686681
Alignment:
| Q |
123 |
cacactagcttttgttgctgttgttaatcaaattggtggtg |
163 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||||||||| |
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| T |
20686641 |
cacactagctttagttgtcgttgttaatcaaattggtggtg |
20686681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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