View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16905_high_17 (Length: 367)
Name: NF16905_high_17
Description: NF16905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16905_high_17 |
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Alignment Details
Target: chr2 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 18 - 356
Target Start/End: Complemental strand, 10296201 - 10295867
Alignment:
| Q |
18 |
ccatatagttgcacaaaccactcagaactgccacgtttcatttttattaccaagtttgatgccatccaaactatt---atcagggatactgctcactgct |
114 |
Q |
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| T |
10296201 |
ccatatagttgcacaaaccactcagaactgccacgtttcatttttattaccaagtttgatgccatccaaactattgttatcagggatactgct------- |
10296109 |
T |
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| Q |
115 |
gaggctacaacttgatagtggttcgagataatgtacaactaattcgtggaaaggtgaagttttttgagataatgatgctgacttcgaagaaagactagtt |
214 |
Q |
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| T |
10296108 |
gaggctacaacttgatagtggttcaagataatgtacaactaattcgtggaaaggtgaagttttttgagataatgatgctgacttcgaagaaagactagtt |
10296009 |
T |
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| Q |
215 |
ccaaccacaatcaccagcttacttccaaacttgactagttccattgattttacttctccatgttcaagttcaaaagacgccagtactgacccacttagtg |
314 |
Q |
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| T |
10296008 |
ccaaccacaatcaccagcttacttccaaacttgactagttccattgattttacttctccatgttcaagttcaaaagacgccagtactgacccacttagtg |
10295909 |
T |
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| Q |
315 |
gatccacacaacatatgtcagacgaatatgtaccatgattca |
356 |
Q |
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| T |
10295908 |
gatccacacaacatatgtcagacgaatatgtaccatgattca |
10295867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 206 - 349
Target Start/End: Original strand, 43797011 - 43797157
Alignment:
| Q |
206 |
agactagttccaaccacaatcaccagcttacttccaaacttgactagttccattgattttact---tctccatgttcaagttcaaaagacgccagtactg |
302 |
Q |
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| T |
43797011 |
agactagttccaaccacaagcacctgctcacttccaaccctaattaattccatggatgttgctgtttctccaagttctagtctaaaagacgatagtactg |
43797110 |
T |
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| Q |
303 |
acccacttagtggatccacacaacatatgtcagacgaatatgtacca |
349 |
Q |
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| T |
43797111 |
acccgcttaggggatccacacaacatatgtcagacaaacatgtacca |
43797157 |
T |
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