View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16905_high_24 (Length: 308)

Name: NF16905_high_24
Description: NF16905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16905_high_24
NF16905_high_24
[»] chr4 (1 HSPs)
chr4 (6-292)||(46853289-46853584)


Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 6 - 292
Target Start/End: Original strand, 46853289 - 46853584
Alignment:
Q  6 aggagcacagaacaaggcattgtgtgacatggctttgcataagacaaaattattgtgtgacatatggnnnnnnnn-cctataatataagaccatgattag 104  Q
    |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||    
T  46853289 aggaacacaaaacaaggcattgtgtgacatggctttgcataagacaaaattattgtgtgacatatggtttttttttcctataatataagaccatgattag 46853388  T
Q  105 agcaaact--------ccaagagttaatgtgatacatagacttctcgggtaaaaggatagggaaaactacactgaattggataagagaaattaaagggga 196  Q
    ||| ||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46853389 agctaactcttgaactccaagagttaatgtgatacatagacttctcgggtaaaaggatagggaaaactacactgaattggataagagaaattaaagggga 46853488  T
Q  197 gactctaaagtccagaaatttggtgtgtatcttcacaggtaatctttgctacatcacattacattgatatatacttgaatatgtgagtgtgagttg 292  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46853489 gactctaaagtccagaaatttggtgtgtatcttcacaggtaatctttgctacatcacattacattgatatatacttgaatatgtgagtgtgagttg 46853584  T

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