View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16905_high_36 (Length: 228)
Name: NF16905_high_36
Description: NF16905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16905_high_36 |
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Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 17 - 213
Target Start/End: Original strand, 5656990 - 5657186
Alignment:
| Q |
17 |
aaatttgacatgctctgctaacttttgaggaacaaaagtagcagctaataaaacactttttgctgcaaggcataactatattatctgaacttcgattatg |
116 |
Q |
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| T |
5656990 |
aaatttgacatgctctgctaacttttgaggaacaaaagtagcagctaataaaacactttttgctgcaaggcataactatattatctgaacttcgattatg |
5657089 |
T |
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| Q |
117 |
aatcactaattactttatttttaagttcttgaaatcatttttaaatgagtttttaacaaaataaacatagaaaactggacaataaaatccgcctttg |
213 |
Q |
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| T |
5657090 |
aatcactaattactttatttttaagttcttgaaatcatttttaaatgagtttttaacaaaataaacatagaaaactggacaataaaatccgcctttg |
5657186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 17 - 172
Target Start/End: Original strand, 5718732 - 5718884
Alignment:
| Q |
17 |
aaatttgacatgctctgctaacttttgaggaacaaaagtagcagctaataaaacactttttgctgcaaggcataactatattatctgaacttcgattatg |
116 |
Q |
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|||||||||||| |||||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||||||||||| |||||||| |||||| |
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| T |
5718732 |
aaatttgacatgttctgctaacttttgaggatcaaaagtagcagctaa---aacactttctgctgcaaggcataactatattatatgaacttcaattatg |
5718828 |
T |
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| Q |
117 |
aatcactaattactttatttttaagttcttgaaatcatttttaaatgagtttttaa |
172 |
Q |
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| T |
5718829 |
aatcactaattactttctttttaagttcttgaaatcatttttaaatgagtttttaa |
5718884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 17 - 172
Target Start/End: Original strand, 5686591 - 5686742
Alignment:
| Q |
17 |
aaatttgacatgctctgctaacttttgaggaacaaaagtagcagctaataaaacactttttgctgcaaggcataactatattatctgaacttcgattatg |
116 |
Q |
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|||||||||||| |||||||||||||||||| |||||||||||||||| |||||||| ||||||||| |||||||||||||| |||||||| |||||| |
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| T |
5686591 |
aaatttgacatgttctgctaacttttgaggatcaaaagtagcagctaa---aacactttctgctgcaag-cataactatattatatgaacttcaattatg |
5686686 |
T |
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| Q |
117 |
aatcactaattactttatttttaagttcttgaaatcatttttaaatgagtttttaa |
172 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
5686687 |
aatcactaattactttctttttaagttcttgaaatcatttttaaatgagtttttaa |
5686742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 170
Target Start/End: Complemental strand, 17036469 - 17036439
Alignment:
| Q |
140 |
agttcttgaaatcatttttaaatgagttttt |
170 |
Q |
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| T |
17036469 |
agttcttgaaatcatttttaaatgagttttt |
17036439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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