View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16905_high_5 (Length: 660)
Name: NF16905_high_5
Description: NF16905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16905_high_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 578; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 578; E-Value: 0
Query Start/End: Original strand, 12 - 645
Target Start/End: Original strand, 40944013 - 40944646
Alignment:
| Q |
12 |
acagaagaaaatatatggttctgatgcttattctgcttgttttacagatttttgaatgctggaatatttggaaacggaactgagtcaagccacacacttc |
111 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |
|
|
| T |
40944013 |
acagaagaaaataaatggttctgatgcttattctgcttgtttttcagatttttgaatgctggaatatttggaaaaggaagtgagtcaagccacacacttc |
40944112 |
T |
|
| Q |
112 |
cacacacagcaacaagagctgccatgctagtgagaatcaacacactcctccaaggttattcaggaatcagatttgaaatcttggaagccatcaccaatct |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40944113 |
cacacacagcaacaagagctgccatgctagtgagaatcaacacactcctccaaggttattcaggaatcagatttgaaatcttggaagccatcaccaatct |
40944212 |
T |
|
| Q |
212 |
ccttaacaacaacgtcactccatgtttaccacttcgcggtacaatcacagcttcaggagatttggtccctctatcttacattgctggtttactaactgga |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40944213 |
ccttaacaacaacgtcactccatgtttaccacttcgcggtacaatcacagcttcaggagatttggtccctctatcttacattgctggtttactaactgga |
40944312 |
T |
|
| Q |
312 |
agacctaattccaaagctcatggaccctctggagaagtagttaatgcaaaagaagcttttcaattggctggaatcaatgctgagttctttgaattacaac |
411 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||| || |||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
40944313 |
agaccaaattccaaagctcatggaccatctggagaaatacttaatgcaaaagaagcttttaaattggctggaatcaatgctgaattcttagaattacaac |
40944412 |
T |
|
| Q |
412 |
caaaagaaggccttgcacttgttaacggaacagctgttggttccggtttagcttctattgttctcttcgaggctaacattttggctgtgttgtctgaagt |
511 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40944413 |
caaaagaaggccttgcacttgttaacggaacagctgttggttccggtttagcttcaattgttctcttcgaggctaacattttggctgtgttgtctgaagt |
40944512 |
T |
|
| Q |
512 |
tctatcagctatttttgctgaagttatgcaaggaaaacctgaatttaccgatcatttgacacacaagttgaaacaccaccctggtcaaattgaggctgct |
611 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40944513 |
tctatcagctatttttgctgaagttatgcaagggaaacctgagtttaccgatcatttgacacacaagttgaaacaccaccctggtcaaattgaggctgct |
40944612 |
T |
|
| Q |
612 |
gctattatggaacacattttggatggaagtgctt |
645 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
40944613 |
gctattatggaacacattttggatggaagtgctt |
40944646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 47 - 645
Target Start/End: Original strand, 40958013 - 40958611
Alignment:
| Q |
47 |
cttgttttacagatttttgaatgctggaatatttggaaacggaactgagtcaagccacacacttccacacacagcaacaagagctgccatgctagtgaga |
146 |
Q |
| |
|
|||||||| ||| ||||||||||| |||||||| ||||| ||||| ||||||| |||||||| |||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
40958013 |
cttgttttccaggtttttgaatgcaggaatattcggaaatggaacagagtcaaatcacacactaccacacacggcaacaagagcagccatgctagtgaga |
40958112 |
T |
|
| Q |
147 |
atcaacacactcctccaaggttattcaggaatcagatttgaaatcttggaagccatcaccaatctccttaacaacaacgtcactccatgtttaccacttc |
246 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40958113 |
atcaacacactcctccaaggctattcaggaattagatttgaaatcttggaagccatcactaagctccttaacaacaacgtcactccatgtttaccacttc |
40958212 |
T |
|
| Q |
247 |
gcggtacaatcacagcttcaggagatttggtccctctatcttacattgctggtttactaactggaagacctaattccaaagctcatggaccctctggaga |
346 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||| |||||||| |
|
|
| T |
40958213 |
gcggtacaatcacagcttcaggagatttggtccctctatcttacattgctggtttactaacaggaagaccaaattcaaaagctcatggaccatctggaga |
40958312 |
T |
|
| Q |
347 |
agtagttaatgcaaaagaagcttttcaattggctggaatcaatgctgagttctttgaattacaaccaaaagaaggccttgcacttgttaacggaacagct |
446 |
Q |
| |
|
| || |||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40958313 |
aatacttaatgcaaaagaagcttttaaattggctggaatcaatgctgaattcttagaattacaaccaaaagaaggccttgcacttgttaacggaacagca |
40958412 |
T |
|
| Q |
447 |
gttggttccggtttagcttctattgttctcttcgaggctaacattttggctgtgttgtctgaagttctatcagctatttttgctgaagttatgcaaggaa |
546 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
40958413 |
gttggttcaggtttagcttcaattgttctcttagaggctaacattttggctgtgttgtctgaagttctatcagctatttttgctgaagttatgcaaggga |
40958512 |
T |
|
| Q |
547 |
aacctgaatttaccgatcatttgacacacaagttgaaacaccaccctggtcaaattgaggctgctgctattatggaacacattttggatggaagtgctt |
645 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40958513 |
aacctgagtttaccgatcatttgacacacaagttgaaacaccaccctggtcaaattgaggctgctgctattatggaacacattttggatggaagtgctt |
40958611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 198; Significance: 1e-107; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 60 - 645
Target Start/End: Complemental strand, 28185358 - 28184773
Alignment:
| Q |
60 |
tttttgaatgctggaatatttggaaacggaactgagtcaagccacacacttccacacacagcaacaagagctgccatgctagtgagaatcaacacactcc |
159 |
Q |
| |
|
||||||||||| ||||||||||| || || || || |||| ||||| ||||| ||||||||||||||||| ||||| ||||| |||||||| || | |
|
|
| T |
28185358 |
tttttgaatgccggaatatttggcaatggtacagaatcaaattgtacactaccacatacagcaacaagagctgcaatgcttgtgaggatcaacactcttc |
28185259 |
T |
|
| Q |
160 |
tccaaggttattcaggaatcagatttgaaatcttggaagccatcaccaatctccttaacaacaacgtcactccatgtttaccacttcgcggtacaatcac |
259 |
Q |
| |
|
| ||||| ||||| || || |||||||||||||||||||| ||||| || ||| | |||||||| | || ||||||||||||||||||||||||||||| |
|
|
| T |
28185258 |
ttcaagggtattctggtattagatttgaaatcttggaagctatcacaaagctcttgaacaacaatattaccccatgtttaccacttcgcggtacaatcac |
28185159 |
T |
|
| Q |
260 |
agcttcaggagatttggtccctctatcttacattgctggtttactaactggaagacctaattccaaagctcatggaccctctggagaagtagttaatgca |
359 |
Q |
| |
|
|||||| || ||| | || || || ||||||||||| |||||| |||| || ||||| || || ||||| |||||| ||||||||| | | ||||| |
|
|
| T |
28185158 |
agcttccggtgatcttgttccactctcttacattgccggtttattaacgggcagacccaactctaaagccgttggaccgtctggagaaattctcaatgcc |
28185059 |
T |
|
| Q |
360 |
aaagaagcttttcaattggctggaatcaatgctgagttctttgaattacaaccaaaagaaggccttgcacttgttaacggaacagctgttggttccggtt |
459 |
Q |
| |
|
|| |||||||||||| | ||||| || | |||| ||||||||||| ||||| || ||||| ||||| |||||||| ||||| ||||||||||| |||| |
|
|
| T |
28185058 |
aaggaagcttttcaacttgctggcattggttctgatttctttgaattgcaacctaaggaaggtcttgctcttgttaatggaactgctgttggttctggtt |
28184959 |
T |
|
| Q |
460 |
tagcttctattgttctcttcgaggctaacattttggctgtgttgtctgaagttctatcagctatttttgctgaagttatgcaaggaaaacctgaatttac |
559 |
Q |
| |
|
|||||||||||||||| ||||| || || | | || || |||||||||||| | || || ||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
28184958 |
tagcttctattgttctgttcgaagcaaatgtactagcggttttgtctgaagttatgtcggcaattttcgctgaagttatgcaagggaaacctgaatttac |
28184859 |
T |
|
| Q |
560 |
cgatcatttgacacacaagttgaaacaccaccctggtcaaattgaggctgctgctattatggaacacattttggatggaagtgctt |
645 |
Q |
| |
|
||||||||||| || |||||||| || ||||||||||||||||| ||||||||||||||||| || |||||||||||||| |||| |
|
|
| T |
28184858 |
tgatcatttgactcataagttgaagcatcaccctggtcaaattgaagctgctgctattatggagcatattttggatggaagcgctt |
28184773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 522 - 641
Target Start/End: Complemental strand, 42610282 - 42610163
Alignment:
| Q |
522 |
atttttgctgaagttatgcaaggaaaacctgaatttaccgatcatttgacacacaagttgaaacaccaccctggtcaaattgaggctgctgctattatgg |
621 |
Q |
| |
|
||||| || |||||||||| |||||||||| |||| || || ||||| | || || |||||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
42610282 |
attttcgcggaagttatgctaggaaaacctcaattcactgaccatttaattcataaagtgaaacttcatcctggtcaaattgaggctgctgctattatgg |
42610183 |
T |
|
| Q |
622 |
aacacattttggatggaagt |
641 |
Q |
| |
|
|||| ||||| ||||||||| |
|
|
| T |
42610182 |
aacatattttagatggaagt |
42610163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 116 - 199
Target Start/End: Complemental strand, 42610688 - 42610605
Alignment:
| Q |
116 |
cacagcaacaagagctgccatgctagtgagaatcaacacactcctccaaggttattcaggaatcagatttgaaatcttggaagc |
199 |
Q |
| |
|
|||||| |||||||| | |||| | || |||||||||||| | || ||||| |||||||||||||||||||||||| ||||||| |
|
|
| T |
42610688 |
cacagccacaagagcaggcatgttggttagaatcaacacattgcttcaaggatattcaggaatcagatttgaaatcatggaagc |
42610605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 77; Significance: 2e-35; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 408 - 632
Target Start/End: Original strand, 40549126 - 40549350
Alignment:
| Q |
408 |
caaccaaaagaaggccttgcacttgttaacggaacagctgttggttccggtttagcttctattgttctcttcgaggctaacattttggctgtgttgtctg |
507 |
Q |
| |
|
||||| |||||||| |||||||||||||| ||||| | ||||||| | |||||||||||||| ||||| || || ||||| || || |||| || |||| |
|
|
| T |
40549126 |
caacctaaagaaggtcttgcacttgttaatggaactggtgttggtgctggtttagcttctatagttctatttgatgctaatatcttaactgttttatctg |
40549225 |
T |
|
| Q |
508 |
aagttctatcagctatttttgctgaagttatgcaaggaaaacctgaatttaccgatcatttgacacacaagttgaaacaccaccctggtcaaattgaggc |
607 |
Q |
| |
|
|| || | ||||| ||||| |||||||||||||||||||| || || ||||| |||||||| ||||| || |||||||| || |||||||||||||| || |
|
|
| T |
40549226 |
aaattatgtcagcgattttcgctgaagttatgcaaggaaagccagagtttacagatcatttaacacataaattgaaacatcatcctggtcaaattgaagc |
40549325 |
T |
|
| Q |
608 |
tgctgctattatggaacacattttg |
632 |
Q |
| |
|
||| || | |||||||| |||||| |
|
|
| T |
40549326 |
tgcagccttgatggaacatattttg |
40549350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 55 - 241
Target Start/End: Original strand, 40548770 - 40548956
Alignment:
| Q |
55 |
acagatttttgaatgctggaatatttggaaacggaactgagtcaagccacacacttccacacacagcaacaagagctgccatgctagtgagaatcaacac |
154 |
Q |
| |
|
|||| ||||||||||||||||| ||||| || ||||| || | |||| ||| | ||||| | |||||||||||||| ||| |||| ||||||||||| |
|
|
| T |
40548770 |
acaggtttttgaatgctggaatttttggtaatggaacagaacaatgccatacattgccacaaaatgcaacaagagctgcaatgttagtaagaatcaacac |
40548869 |
T |
|
| Q |
155 |
actcctccaaggttattcaggaatcagatttgaaatcttggaagccatcaccaatctccttaacaacaacgtcactccatgtttacc |
241 |
Q |
| |
|
|||||| ||||| || ||||||||||||| |||||| | |||||||| || || || || ||| ||||| | || ||||||||||| |
|
|
| T |
40548870 |
actccttcaaggctactcaggaatcagatatgaaatgctagaagccattacaaaacttctcaaccacaacattacaccatgtttacc |
40548956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 1e-27; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 417 - 640
Target Start/End: Original strand, 43216168 - 43216391
Alignment:
| Q |
417 |
gaaggccttgcacttgttaacggaacagctgttggttccggtttagcttctattgttctcttcgaggctaacattttggctgtgttgtctgaagttctat |
516 |
Q |
| |
|
||||| ||||| ||||| ||||| ||||||||||| || ||| | |||||||| || || || ||||| ||||| || ||| |||| || | |||||||| |
|
|
| T |
43216168 |
gaaggtcttgctcttgtaaacggtacagctgttggatctggtgtggcttctatggtactttttgaggcaaacatattagctttgttttcagtagttctat |
43216267 |
T |
|
| Q |
517 |
cagctatttttgctgaagttatgcaaggaaaacctgaatttaccgatcatttgacacacaagttgaaacaccaccctggtcaaattgaggctgctgctat |
616 |
Q |
| |
|
|||| |||| ||||||| ||||||||||| || |||||||| ||||| | | ||||||| |||| ||| || |||||||| ||||| |||||||| |
|
|
| T |
43216268 |
cagcagttttcactgaagtcatgcaaggaaagccggaatttacacatcatcttatacacaagctgaagttccatccaggtcaaatcgaggcagctgctat |
43216367 |
T |
|
| Q |
617 |
tatggaacacattttggatggaag |
640 |
Q |
| |
|
||||||||||||||| |||||||| |
|
|
| T |
43216368 |
tatggaacacattttagatggaag |
43216391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 120 - 214
Target Start/End: Original strand, 43215871 - 43215965
Alignment:
| Q |
120 |
gcaacaagagctgccatgctagtgagaatcaacacactcctccaaggttattcaggaatcagatttgaaatcttggaagccatcaccaatctcct |
214 |
Q |
| |
|
||||||||||| || ||||| ||||| | || || || || ||||| |||||||| || |||||||||||||| ||||| |||||||| ||||| |
|
|
| T |
43215871 |
gcaacaagagcagctatgcttgtgagggttaatacccttctacaaggctattcaggcattagatttgaaatcttagaagctatcaccaagctcct |
43215965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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