View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16905_high_7 (Length: 509)
Name: NF16905_high_7
Description: NF16905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16905_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 123 - 496
Target Start/End: Complemental strand, 23414546 - 23414161
Alignment:
| Q |
123 |
caggaacaatacaatatggagtttcctctagccaaactcta------------ttaggctcttaaagggcataatgggccagcttataggccactgtatt |
210 |
Q |
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| T |
23414546 |
caggaacaatacaatttggagtttcctctagccaaactctattagaaactctattaggctctgaaagggcataatgggccagcttataggccactgtatt |
23414447 |
T |
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| Q |
211 |
gcctttgcctattctattgatatgactaaacctacactcttcaaaatagtgaagattttgctgataccatttacaaaactaccaacataattcctaggag |
310 |
Q |
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| T |
23414446 |
gcctttgcctattctattgatatgactaaacctacactcttcaaaatagtgaagattttgctgataccatttacaaaactaccaacataattcctaggag |
23414347 |
T |
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| Q |
311 |
tctctacctcttcctttagaatctaaaccaatttctcacagtcagattccagaattattttcctgaaacaacattcagctgcaaacttgacagttttata |
410 |
Q |
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| T |
23414346 |
tctctacctcttcctttagaatctaaaccaatttctcacagtcagattccagaattattttcctgaaacaacattcagctgcaaacttgacagttttata |
23414247 |
T |
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| Q |
411 |
cctcgcatatacttccgcaactgtgaaatcatcgaagcccttgacagtccaggttgcagctgctaacacttcaccatcttcgtttc |
496 |
Q |
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| T |
23414246 |
cctcgcatatacctccgcaactgtgaaatcatcgaagcccttgacagtccaggttgcagctgctaacacttcaccatcttcgtttc |
23414161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 33 - 124
Target Start/End: Complemental strand, 23414802 - 23414711
Alignment:
| Q |
33 |
tagagagaaaatgacatgctgtgtttcattctatatccggcacaaggacgaggctatatatcaacacattattcaaactagtaaatactcca |
124 |
Q |
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| T |
23414802 |
tagagagaaaatgacatgctgtgtttcattctatatccggcacaaggacgaggctatatatcaacacattattcaaactagtaaatactcca |
23414711 |
T |
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