View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16905_low_1 (Length: 954)
Name: NF16905_low_1
Description: NF16905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16905_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 570; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 570; E-Value: 0
Query Start/End: Original strand, 305 - 940
Target Start/End: Original strand, 41786026 - 41786662
Alignment:
| Q |
305 |
gatgaggatttggatagccttggggagaagaagagggaagcaataagacagctttgtttggttgttgagtttcatcgcgaccggtgtaactatctaatga |
404 |
Q |
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| T |
41786026 |
gatgaggatttggatagccttggggagaagaagagggaagcaataagacagctttgtttggttgttgagtttcatcgcgaccggtgtaactatctaatga |
41786125 |
T |
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| Q |
405 |
atttggtcgcaagtatgagagttaataagaagacatgaactttcttttttctgcttattattgtacatggagatggagtcattggaaaccaatactccta |
504 |
Q |
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| T |
41786126 |
atttggtcacaagtatgagagttaataagaagacatgaactttcttttttctgcttattattgtacatggagatggagtcattggaaaccaatactccta |
41786225 |
T |
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| Q |
505 |
agttttgtaaaattgaaaaatgattcattctattattg-ttttcctactttaaccctttcaattgttgatttgagctagtttaaaaaatatggtggcaca |
603 |
Q |
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| T |
41786226 |
agttttgtaaaattgaaaaatgattcattctattattgtttttcttactttacccctttcaatttttgattttagccagtttaaaaaatatggtggcaca |
41786325 |
T |
|
| Q |
604 |
ataggccagattaccaaagtgataggtggatctattctcgcagaaaaaacagttagaaatgtttac-aaaataaatacaaacacctgcaatgcaagcaag |
702 |
Q |
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||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||| ||||||||| |
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| T |
41786326 |
ataggcctgattaccaaagtgataggtggatctattatcgcagaaaaaacagttagaaatgtttacaaaaagaaatacaaacacctgcaacgcaagcaag |
41786425 |
T |
|
| Q |
703 |
actcaagagccactctttatgccttttacacattcgttaaatccaaatctgcaaaacagttttaatatttccaaataatggtttatagaatagaatagta |
802 |
Q |
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| T |
41786426 |
actcaagagccactctttat-ccttttacacattcgttaaatccaaatctgcaaaacagttttaatatttccaaataatggtttatagaatagaatagta |
41786524 |
T |
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| Q |
803 |
atacttacaactaaagtgatgtttgtatcctgactctcatcctcatcaattgatattttcaaatatttcttttatttaatgtaactcttcgaaatttaac |
902 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
41786525 |
atacttacaactaaagtgatgtttgtatcctgactctcatcctcatcaattgatattttcaaatatttcttttatgtaatgtaactcttcgaaatttaac |
41786624 |
T |
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| Q |
903 |
atattagtgacattgtgagaaaatagagtgtggaagat |
940 |
Q |
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| T |
41786625 |
atattagtgacattgtgagaaaatagagtgtggaagat |
41786662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 247; E-Value: 1e-136
Query Start/End: Original strand, 12 - 262
Target Start/End: Original strand, 41785733 - 41785983
Alignment:
| Q |
12 |
aggagcacagagagtgtgtcatgagcaatgtgtctaaaatgctttgtgaggttcagtttgcgaaggattggataaagaaaatgaacgtcgaaatgaaaca |
111 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41785733 |
aggaacacagagagtgtgtcatgagcaatgtgtctaaaatgctttgtgaggttcagtttgcgaaggattggataaagaaaatgaacgtcgaaatgaaaca |
41785832 |
T |
|
| Q |
112 |
attgaaggaaaatgtggattgtcttacaacgctactgagcgaaaaagaagagcaggaattgttgttaagagacaaagtatggaatttagaagccacagtg |
211 |
Q |
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| T |
41785833 |
attgaaggaaaatgtggattgtcttacaacgctactgagcgaaaaagaagagcaggaattgttgttaagagacaaagtatggaatttagaagccacagtg |
41785932 |
T |
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| Q |
212 |
agcaaagaaggaggagagaaattgaacttgacaaatgcagtgagccagctt |
262 |
Q |
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| T |
41785933 |
agcaaagaaggaggagagaaattgaacttgacaaatgcagtgagccagctt |
41785983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 96
Target Start/End: Original strand, 10835111 - 10835178
Alignment:
| Q |
25 |
gtgtgtcatgagcaatgtgtctaaaatgctttgtgaggttcagtttgcgaaggattggataaagaaaatgaa |
96 |
Q |
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|||||||||||||| ||| |||||||| || ||||||| |||||| |||||| |||||||||||||||| |
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| T |
10835111 |
gtgtgtcatgagcagtgtttctaaaattct----gaggttcggtttgctaaggataggataaagaaaatgaa |
10835178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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