View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16905_low_10 (Length: 506)
Name: NF16905_low_10
Description: NF16905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16905_low_10 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 452; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 16 - 491
Target Start/End: Complemental strand, 39553743 - 39553268
Alignment:
| Q |
16 |
atgcagtcactagccaactcaaacaataatggtggtagttccaagcgctcaaaactcgagtccttttctgctttcttgtggaaaatggttgccgaagcgg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39553743 |
atgcagtcactagccaactcaaacaataatggtggtagttccaagcgctcaaaactcgagtccttttctgctttcttgtggaaaatggttgccgaagcgg |
39553644 |
T |
|
| Q |
116 |
cttcaatcaataatgaaaatattgttgcaaaaatggggcttgtggttgacggaagaaagaggctaagcaacggtgacaaaaacaaagaagagcttatgaa |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39553643 |
cttcaatcaataatgaaaatattgttgcaaaaatggggcttgtggttgacggaagaaagaggctaagcaacggtgacaaaaacaaagaagagcttatgaa |
39553544 |
T |
|
| Q |
216 |
ttcatattttgggaatgtgctttcgattccctatggtggtagattagcagaagagctggttgataatccgttatgttgggtggcagatcgagttcatgag |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
39553543 |
ttcatattttgggaatgtgctttcgattccctatggtggtagattagcagaagagctggttgataatccgctatgttgggtggctgatcgagttcatgag |
39553444 |
T |
|
| Q |
316 |
tttttggaggcggcggtgacagaggagcatttcttgggtctaattgattgggtggaagagcatcgaccagttccgggattggctaggatttattgtggca |
415 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
39553443 |
tttttggaggcagcagtgacagaggagcatttcttgggtctaattgattgggtggaagagcatcgaccagttcctggattggctaggatttattgtggca |
39553344 |
T |
|
| Q |
416 |
gcactggtggagaagaaggaccaacatttgtggtatcttcagggcagaggtttccagagtcgaaggttgattttgg |
491 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39553343 |
gcactggtggagaagaaggaccaacatttgttgtatcttcagggcagaggtttccagagtcgaaggttgattttgg |
39553268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 16 - 491
Target Start/End: Complemental strand, 39543724 - 39543249
Alignment:
| Q |
16 |
atgcagtcactagccaactcaaacaataatggtggtagttccaagcgctcaaaactcgagtccttttctgctttcttgtggaaaatggttgccgaagcgg |
115 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39543724 |
atgcagtcacttgccaactcaaacaataatggtggtagttccaaacgctcaaaactcgagtccttttctgctttcttgtggaaaatggttgccgaagcgg |
39543625 |
T |
|
| Q |
116 |
cttcaatcaataatgaaaatattgttgcaaaaatggggcttgtggttgacggaagaaagaggctaagcaacggtgacaaaaacaaagaagagcttatgaa |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39543624 |
cttcaatcaataatgaaaatattgttgcaaaaatggggcttgtggttgacggaagaaagaggctaagcaacggtgacaaaaacaaagaagagcttatgaa |
39543525 |
T |
|
| Q |
216 |
ttcatattttgggaatgtgctttcgattccctatggtggtagattagcagaagagctggttgataatccgttatgttgggtggcagatcgagttcatgag |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
39543524 |
ttcatattttgggaatgtgctttcgattccctatggtggtagattagcagaagagctggttgataatccgctatgttgggtggctgatcgagttcatgag |
39543425 |
T |
|
| Q |
316 |
tttttggaggcggcggtgacagaggagcatttcttgggtctaattgattgggtggaagagcatcgaccagttccgggattggctaggatttattgtggca |
415 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
39543424 |
tttttggaggcagcagtgacagaggagcatttcttgggtctaattgattgggtggaagagcatcgaccagttcctggattggctaggatttattgtggca |
39543325 |
T |
|
| Q |
416 |
gcactggtggagaagaaggaccaacatttgtggtatcttcagggcagaggtttccagagtcgaaggttgattttgg |
491 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39543324 |
gcactggtggagaagaaggaccaacatttgtggtatcttcagggcagaggtttccagagtcgaaggttgattttgg |
39543249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 58 - 488
Target Start/End: Complemental strand, 39586808 - 39586378
Alignment:
| Q |
58 |
aagcgctcaaaactcgagtccttttctgctttcttgtggaaaatggttgccgaagcggcttcaatcaataatgaaaatattgttgcaaaaatggggcttg |
157 |
Q |
| |
|
|||||||||||||| || || ||||||||||||||||||||||||||||| ||| ||||||| ||||| ||||||| ||||||||||||||||| ||| |
|
|
| T |
39586808 |
aagcgctcaaaacttgaatcgttttctgctttcttgtggaaaatggttgcatcagccgcttcaaccaatagtgaaaatgttgttgcaaaaatggggattg |
39586709 |
T |
|
| Q |
158 |
tggttgacggaagaaagaggctaagcaacggtgacaaaaacaaagaagagcttatgaattcatattttgggaatgtgctttcgattccctatggtggtag |
257 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||| |||||||||||||||||||| | ||||||| || |||| |
|
|
| T |
39586708 |
tggttgacggaagaaagagattaagcaacggtgacaaaaacaaagaagagtttatgagttcgtattttgggaatgtgctttcaactccctatagttgtag |
39586609 |
T |
|
| Q |
258 |
attagcagaagagctggttgataatccgttatgttgggtggcagatcgagttcatgagtttttggaggcggcggtgacagaggagcatttcttgggtcta |
357 |
Q |
| |
|
|||| |||||| || ||||| || |||||||||||||| |||| | ||||||||||||| |||||| |||| || || || ||||||||||| ||| |
|
|
| T |
39586608 |
attaatagaagaacttgttgaaaagtcgttatgttgggtgacagagcaagttcatgagtttgtggaggttgcggacacggaagaacatttcttgggacta |
39586509 |
T |
|
| Q |
358 |
attgattgggtggaagagcatcgaccagttccgggattggctaggatttattgtggcagcactggtggagaagaaggaccaacatttgtggtatcttcag |
457 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||| ||||||||||| || |||||||||| ||| ||||| ||||||||||| ||||| | |
|
|
| T |
39586508 |
attgattgggtggaagagcatcgaccggttccgggattggcaaggatttattgcggagtaactggtggagcagatggaccgacatttgtggtgtcttctg |
39586409 |
T |
|
| Q |
458 |
ggcagaggtttccagagtcgaaggttgattt |
488 |
Q |
| |
|
|||| |||||| ||||||||||||| ||||| |
|
|
| T |
39586408 |
ggcaaaggttttcagagtcgaaggtagattt |
39586378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 337 - 413
Target Start/End: Complemental strand, 17503234 - 17503158
Alignment:
| Q |
337 |
gaggagcatttcttgggtctaattgattgggtggaagagcatcgaccagttccgggattggctaggatttattgtgg |
413 |
Q |
| |
|
||||| |||||| | || || |||||||||||||||| |||||||| ||||| |||||||| | ||||||| |||| |
|
|
| T |
17503234 |
gaggaacatttcctagggctcattgattgggtggaagcacatcgacctgttcctggattggcgaagatttatagtgg |
17503158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University