View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16905_low_18 (Length: 381)
Name: NF16905_low_18
Description: NF16905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16905_low_18 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 79 - 381
Target Start/End: Complemental strand, 5657468 - 5657166
Alignment:
| Q |
79 |
gccgggaaagacctgccaagaaagcacccaccgaaccaaagaacaccaagtccctccagaagaaaggaatcagaacaaaccgccattgagcggtaggtac |
178 |
Q |
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| T |
5657468 |
gccgggaaagacctgccaagaaagcacccaccgaaccaaagaacaccaagtccctccagaagaaaggaatcagaacaaaccgccattgagcggtaggtac |
5657369 |
T |
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| Q |
179 |
aagtggatcctggccagcacctgagagaatgacatcccgacaccgccacgaccacgaaaccctataagttccattacaatacaagtttccccttcgactc |
278 |
Q |
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| T |
5657368 |
aagtggatcctggccagcacctgagagaatgacatcccgacaccgccaccactacgaaaccctataagttccattacaatacaagtttccccttcgactt |
5657269 |
T |
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| Q |
279 |
ataaaaagagtagtgcttccagacattttaccaaaggaaccatttttaggaagaaaatttaacccaatctgccgggtcataacaaaggcggattttattg |
378 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5657268 |
ataaaaagagtagtgcttccagacattttaccaaaggaaccatttttaggaagaaaatttaacccaatctgccgggtcataacaaaggcggattttattg |
5657169 |
T |
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| Q |
379 |
tcc |
381 |
Q |
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| T |
5657168 |
tcc |
5657166 |
T |
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