View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16905_low_19 (Length: 378)
Name: NF16905_low_19
Description: NF16905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16905_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 142 - 293
Target Start/End: Original strand, 23414824 - 23414982
Alignment:
| Q |
142 |
ctcgtcataagcacacaatatctag-acaagcaaatagagcccaaagcaaataaa----tcttctttaataaatcatttgaaaacag--tgattctgaat |
234 |
Q |
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| T |
23414824 |
ctcgtcataagcacgcaatatctaggacaagcaaatagagcccaaagcaaataaaggaatcttctttaataaatcatttgaaaacagagtgattctgaat |
23414923 |
T |
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| Q |
235 |
cttgaaaaaaggttaccaaataacaccatacaaacattgttgaattccaaaatcattaa |
293 |
Q |
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| T |
23414924 |
cttgaaaaaaggttaccaaataacaccatacaaacattgttgaattccaatatcattaa |
23414982 |
T |
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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 311 - 361
Target Start/End: Original strand, 23415036 - 23415086
Alignment:
| Q |
311 |
aattcaaaagagaaaatatactgccaattcttcacaagataggcgaaggag |
361 |
Q |
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|||||||||||||||| |||||||||||||||||||||||| ||||||||| |
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| T |
23415036 |
aattcaaaagagaaaacatactgccaattcttcacaagatacgcgaaggag |
23415086 |
T |
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