View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16905_low_24 (Length: 341)
Name: NF16905_low_24
Description: NF16905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16905_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 330
Target Start/End: Original strand, 42158502 - 42158841
Alignment:
| Q |
1 |
taagatgatatttgaccaatttcctaaaggattgcatcaacccagtc---------cctttactctttctcggccatttacgcatgatttcatcattaca |
91 |
Q |
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| T |
42158502 |
taagatgatatttgaccaatttcctaaaggattgcatcaacccagtcaacccagtccctttactctttctcggccatttacgcatgatttcatcattaca |
42158601 |
T |
|
| Q |
92 |
gcccttaaa-ctctttctcaagtcccctcagttttttcaaggtgcgagaatcgtttgtagcattctcgaacatgagaatctcaagagaatcaagccaagg |
190 |
Q |
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||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
42158602 |
gcccttaaaactttttctcaagtcccctcagttttttcaaggtgcaagaatcgtttgtagcattctcgaacatgagaatcttaagagaatcaagccaagg |
42158701 |
T |
|
| Q |
191 |
tccacgaaaacgaaatgtatggtgaagatcttcaagtaacttaacgagtagagagcgttgattgtcaaggagatctaagattgaatggtttttgagaaga |
290 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
42158702 |
tccacgaaaacgaaatgtatggtgaagatcttcaagtaacttaacgagtagaaagcgttgattgtcaaggagatctaagattgaatggttcttgagaaga |
42158801 |
T |
|
| Q |
291 |
agtaaaagttccgccaaggttgtgtatgccaagcccttca |
330 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
42158802 |
agtaaaagttccgccaaggttgtgtatgccaagcccttca |
42158841 |
T |
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