View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16905_low_26 (Length: 328)
Name: NF16905_low_26
Description: NF16905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16905_low_26 |
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Alignment Details
Target: chr6 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 3903561 - 3903876
Alignment:
| Q |
1 |
cctattagaatggacatatttgggggacacctataagctttatatatacaattgaacctatattaatatgcaaatttacaagaaatataacatcattttc |
100 |
Q |
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| T |
3903561 |
cctattagaatggacatatttgggggacacctataagctttatatatacaattgaacctatattaatatgcaaatttacaagaaatataacatcattttc |
3903660 |
T |
|
| Q |
101 |
tatatgttgacgcattagttttgaaattaggcggaacacatcaagtagataatcatcttcatgatcgtgaaattagcaacaacnnnnnnngcacaaacct |
200 |
Q |
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| T |
3903661 |
tatatgttgacgcattagttttgaaattaggtagaacacatcaagtagataatcatcttcatgatcgtgaaattagcaacaacaaaaaaagcacaaacct |
3903760 |
T |
|
| Q |
201 |
acctactcattgttaagcctaaaataaaacatctcaactgataccagattaagcattgattatgacattgttggaatagagttcttttatttcttacata |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3903761 |
acctactcattgttaagcctaaaataaaacatctcaactgataccagattaagcattgattatgacattgttggaatagagttcttttatttcttacata |
3903860 |
T |
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| Q |
301 |
cacacatattacaaaa |
316 |
Q |
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|||||||||||||||| |
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| T |
3903861 |
cacacatattacaaaa |
3903876 |
T |
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