View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16905_low_27 (Length: 313)

Name: NF16905_low_27
Description: NF16905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16905_low_27
NF16905_low_27
[»] chr7 (3 HSPs)
chr7 (72-313)||(23720350-23720591)
chr7 (148-195)||(43160491-43160539)
chr7 (152-196)||(21238823-21238868)
[»] chr1 (1 HSPs)
chr1 (147-192)||(50195468-50195515)
[»] chr6 (1 HSPs)
chr6 (150-196)||(29449687-29449734)
[»] chr5 (2 HSPs)
chr5 (147-193)||(25393928-25393975)
chr5 (148-176)||(27239572-27239600)
[»] chr8 (2 HSPs)
chr8 (151-196)||(32691749-32691795)
chr8 (147-194)||(31681833-31681881)
[»] chr3 (1 HSPs)
chr3 (146-195)||(45382750-45382800)
[»] chr4 (1 HSPs)
chr4 (147-196)||(10435082-10435133)


Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 72 - 313
Target Start/End: Complemental strand, 23720591 - 23720350
Alignment:
Q  72 catctgcagcctcattagaaccgacacttctaattgaagacgtgcacggtgtccgacagatgtccacgtacacatcaccgacacatgtgattacattcaa 171  Q
    ||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  23720591 catctgcagcctcgttagaacctacacttctaattgaagacgtgcacggtgtccaacagatgtccacgtacacatcaccgacacatgtgattacattcaa 23720492  T
Q  172 ttatgatttttcttaaattactacctgattttccataacccacaaaaagaccccaatttccaaaattagcataattcaacaaaacaaagaaaatccatta 271  Q
    ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  23720491 ttatgatttttcttaaattactacctgatttcccttaacccacaaaaagaccccaatttccaaaattagcataattcaacaaaacaaagaaaacccatta 23720392  T
Q  272 tctaaaatccaaatttatcaacacagaacatcaaaatatttc 313  Q
    ||||||||||||||||||||||||| ||||||||||||||||    
T  23720391 tctaaaatccaaatttatcaacacaaaacatcaaaatatttc 23720350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 148 - 195
Target Start/End: Complemental strand, 43160539 - 43160491
Alignment:
Q  148 accgacacatgtgattacattcaattatgat-ttttcttaaattactac 195  Q
    ||||||||||||||||||||||||||||| | |||||||||||||||||    
T  43160539 accgacacatgtgattacattcaattatgttattttcttaaattactac 43160491  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 196
Target Start/End: Complemental strand, 21238868 - 21238823
Alignment:
Q  152 acacatgtgattacattcaattatga-tttttcttaaattactacc 196  Q
    |||||||||||||||||||||| |||  ||||||||||||||||||    
T  21238868 acacatgtgattacattcaattttgacattttcttaaattactacc 21238823  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 192
Target Start/End: Original strand, 50195468 - 50195515
Alignment:
Q  147 caccgacacatgtgattacattcaattatg--atttttcttaaattac 192  Q
    ||||||||||||||||||||||||||||||  |||||| |||||||||    
T  50195468 caccgacacatgtgattacattcaattatgtcattttttttaaattac 50195515  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 150 - 196
Target Start/End: Complemental strand, 29449734 - 29449687
Alignment:
Q  150 cgacacatgtgattacattcaattatgat-ttttcttaaattactacc 196  Q
    ||||||||||||||||||||||||||| | |||||| |||||||||||    
T  29449734 cgacacatgtgattacattcaattatgttattttctgaaattactacc 29449687  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 147 - 193
Target Start/End: Original strand, 25393928 - 25393975
Alignment:
Q  147 caccgacacatgtgattacattcaattatg-atttttcttaaattact 193  Q
    ||||||||||||||||||||||||| |||| ||||| |||||||||||    
T  25393928 caccgacacatgtgattacattcaactatgtattttccttaaattact 25393975  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 176
Target Start/End: Complemental strand, 27239600 - 27239572
Alignment:
Q  148 accgacacatgtgattacattcaattatg 176  Q
    |||||||||||||||||||||||||||||    
T  27239600 accgacacatgtgattacattcaattatg 27239572  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 196
Target Start/End: Complemental strand, 32691795 - 32691749
Alignment:
Q  151 gacacatgtgattacattcaattatg-atttttcttaaattactacc 196  Q
    ||||||||||||||||||||||||||   ||||||||||||||||||    
T  32691795 gacacatgtgattacattcaattatgtcattttcttaaattactacc 32691749  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 194
Target Start/End: Original strand, 31681833 - 31681881
Alignment:
Q  147 caccgacacatgtgattacattcaattatg-atttttcttaaattacta 194  Q
    ||||||||||||||||| ||||||||||||   ||||||||||||||||    
T  31681833 caccgacacatgtgatttcattcaattatgtcattttcttaaattacta 31681881  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 195
Target Start/End: Complemental strand, 45382800 - 45382750
Alignment:
Q  146 tcaccgacacatgtgattacattcaattatgat-ttttcttaaattactac 195  Q
    ||||||||| |||||||||||||||| |||| | |||||||||||||||||    
T  45382800 tcaccgacatatgtgattacattcaaatatgttattttcttaaattactac 45382750  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 196
Target Start/End: Original strand, 10435082 - 10435133
Alignment:
Q  147 caccgacacatgtgattacattcaattatg--atttttcttaaattactacc 196  Q
    |||| |||||||||||||||||||||| ||  |||||| |||||||||||||    
T  10435082 cacctacacatgtgattacattcaattttgtcattttttttaaattactacc 10435133  T

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