View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16905_low_3 (Length: 758)
Name: NF16905_low_3
Description: NF16905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16905_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 560; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 560; E-Value: 0
Query Start/End: Original strand, 65 - 744
Target Start/End: Complemental strand, 33695641 - 33694959
Alignment:
| Q |
65 |
tcattcttgtattgctttttgactaagaataaattagagagggtgactgaccagt--cnnnnnnngattcgtcgtttctagacttttaaataaaccaata |
162 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||| ||||| |
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| T |
33695641 |
tcattcttgtattgatttttgactaagaataaattagagagggtgactgactagtgtcaaaaaaagattcgtcgtttctagacttttaaataaatcaata |
33695542 |
T |
|
| Q |
163 |
tccaatgagaaaaatagcactatgttgtccgattgcatgcattaattgtgaatcataaatgacgtttaccttcattaggatcattatgtaaatcaaattt |
262 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
33695541 |
tccaatgagaaaaatagcactatgttgtccgattgcatgcattaattgtgaatcataaatgacgttcaccttcattaggatcattatgtaaatcaaattt |
33695442 |
T |
|
| Q |
263 |
gagtttatgccaaaccggtatcgtcttagggcaatcccacaacatacgtaaaaatttctgacgaagtactacatctttaacaagaagcaatttaaagaca |
362 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
33695441 |
gagtttatgccaaaccggtatcgtcttagggcaatcccacaacatacgtaaaaatttctgacgaagtactacatctttaacaagtagcaatttaaagaca |
33695342 |
T |
|
| Q |
363 |
tatgataagtacatcaaacctaattagtaggcaacttctcttacataacaatccacgtaaaatgacgaaattgagaggttttattatcactataataatt |
462 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
33695341 |
tatgataagtacatcaaacctaattagtaggcaacttctcttacataacaatccacgtaaaatgatgaaattgagaggttttattatcactataataatt |
33695242 |
T |
|
| Q |
463 |
ttaatgtgcaaagacatcaccattagaaagtttcttgagtttacaaaactaagttatcaccattgagttaaatctcaagtttgagtttagaattgtaacc |
562 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
33695241 |
ttaatgtgcaaagacgtcaccattagaaagtttcttgagtttacaaaactaagttatcaccattgagttaaatctcaagtgtgagtttagaattgtaacc |
33695142 |
T |
|
| Q |
563 |
tcaaactacatagtcactttaattaacaa-nnnnnnnnnctctttctcaatatttttaacaaaataatttnnnnnnnntgtgttttaatatttgtcatgc |
661 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
33695141 |
tcaaactacatagtcactttaattaacaattttttttttctctttctcaatatttttaacaaaataatttaaaaaaaatgtgttttaatatttgtcatgc |
33695042 |
T |
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| Q |
662 |
attataattaaagtttaaccagcaatgaatttgtcaaataagaagagttttgaatccttaaacaagtgacagaggttggatct |
744 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33695041 |
attataattaaagtttaaccagcaatgaatttgtcaaataagaagagttttgaatccttaaacaagtgacagaggttggatct |
33694959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 230 - 315
Target Start/End: Complemental strand, 35297401 - 35297316
Alignment:
| Q |
230 |
accttcattaggatcattatgtaaatcaaatttgagtttatgccaaaccggtatcgtcttagggcaatcccacaacatacgtaaaa |
315 |
Q |
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||||||||| | ||||||||| |||| |||| ||||||||||||||||| | || | |||||||||||| | ||||||| |||||| |
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| T |
35297401 |
accttcatttgaatcattatgaaaattaaatatgagtttatgccaaacccgcatggccttagggcaatcacgcaacatatgtaaaa |
35297316 |
T |
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