View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16905_low_32 (Length: 300)

Name: NF16905_low_32
Description: NF16905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16905_low_32
NF16905_low_32
[»] chr1 (1 HSPs)
chr1 (15-300)||(627550-627846)


Alignment Details
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 15 - 300
Target Start/End: Original strand, 627550 - 627846
Alignment:
Q  15 agtttttgagattgatagaaaaggttattgtggatgaagaattgaga-----------gaaaagttagagagtgtgaaaagagtaagtgcaagaccgcgc 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||           ||||||||||||||||||||||||||||||||||||||||||    
T  627550 agtttttgagattgatagaaaaggttattgtggatgaagaattgagagaaagaagagagaaaagttagagagtgtgaaaagagtaagtgcaagaccgcgc 627649  T
Q  104 aagtgttggttagtattattaatcaaagtcacggatgttagacctcatagagtagtaaattagcacatagtattattatacggttggaggaagccaccct 203  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  627650 aagtgttggttggtattattaatcaaagtcacggatgttagacctcatagagtagtaaattagcacatagtattattatacggttggaggaagccaccct 627749  T
Q  204 aagactctagttgctacttgtgaccaataaatacataactaattaatttactttatcacttttatgttttggtctagattttaacgattttcatctc 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  627750 aagactctagttgctacttgtgaccaataaatacataactaattaatttactttatcacttttatgttttcgtctagattttaacgattttcttctc 627846  T

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