View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16905_low_34 (Length: 271)
Name: NF16905_low_34
Description: NF16905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16905_low_34 |
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Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 11 - 255
Target Start/End: Original strand, 36541869 - 36542113
Alignment:
| Q |
11 |
cagagatcaaccaccttgatagaaaataaatatcacatgaattacatttttcacctttttgtagaccacattggactttggtgtcttcataaaagttata |
110 |
Q |
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| T |
36541869 |
cagagatcaaccaccttgataggaaataaatatcacatgaattacatttttcacctttttgtaggccacattggactttggtgtcttcataaaagttcta |
36541968 |
T |
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| Q |
111 |
gatatggatgttatctttcatgttccactgttccttatccattttatgacctggaactccatatatgattaaaacaccgcacaaacttcacgtagagatc |
210 |
Q |
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| T |
36541969 |
gatatggatgttatctttcatgttccactgttccttatccattttgtgacctggaactccatatatgattaaaataccgcacaaacttcacgtagagatc |
36542068 |
T |
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| Q |
211 |
aacatgcctcactcattttcttttactcttttccccatttctctt |
255 |
Q |
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| T |
36542069 |
aacatgcctcactcgttttcttttactcttttccccatttctctt |
36542113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 80 - 252
Target Start/End: Original strand, 32689033 - 32689205
Alignment:
| Q |
80 |
attggactttggtgtcttcataaaagttatagatatggatgttatctttcatgttccactgttccttatccattttatgacctggaactccatatatgat |
179 |
Q |
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| T |
32689033 |
attggactttggtgtctgcatgaaagtgttggatatggatgtgaaatttcatattccactggcctatctccattatgagtcctacaacttcatatatgat |
32689132 |
T |
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| Q |
180 |
taaaacaccgcacaaacttcacgtagagatcaacatgcctcactcattttcttttactcttttccccatttct |
252 |
Q |
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| T |
32689133 |
taaaacaccgcacaaataacatgtagagatcagcatgcctcactagtgttctttcactcttttttccatttct |
32689205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 90 - 127
Target Start/End: Complemental strand, 31343748 - 31343711
Alignment:
| Q |
90 |
ggtgtcttcataaaagttatagatatggatgttatctt |
127 |
Q |
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| T |
31343748 |
ggtgtcttcatgaaagttatagatatggatgttatctt |
31343711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 87 - 128
Target Start/End: Original strand, 15871350 - 15871391
Alignment:
| Q |
87 |
tttggtgtcttcataaaagttatagatatggatgttatcttt |
128 |
Q |
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| T |
15871350 |
tttggtgtcttcataaaagttgtagatatgcatgttagcttt |
15871391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 91 - 136
Target Start/End: Original strand, 16999692 - 16999737
Alignment:
| Q |
91 |
gtgtcttcataaaagttatagatatggatgttatctttcatgttcc |
136 |
Q |
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| T |
16999692 |
gtgtcttcatgaaagttgtagatatgaatgttatctttcattttcc |
16999737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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