View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16905_low_38 (Length: 247)
Name: NF16905_low_38
Description: NF16905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16905_low_38 |
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Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 3945392 - 3945152
Alignment:
| Q |
1 |
aatttggggaatggaagtgagaaaggaatgaagaaagatgaaggagagatggagcatgtgggtggtttgtatgatccagctgcttcttcactttactgga |
100 |
Q |
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| T |
3945392 |
aatttggggaatggaagtgagaaaggaacgaagaaagatgaaggagagatggagcatgtgggtggtttgtatgatccagctgcttcttcactttactgga |
3945293 |
T |
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| Q |
101 |
atacagcatcatcatcagctattggtgtttggaacgatcaagcttctaatattggttcatcagttacttctttgatctagagtgaacaataaacttaatc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3945292 |
atacagcatcatcatcagctattggtgtttggaacgatcaagcttctaatattggttcatcagttacttctttgatctagagtgaacaataaactcaatc |
3945193 |
T |
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| Q |
201 |
ctcagttcaagttcaaggtcatc-ttaatttggtacctttg |
240 |
Q |
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||||||||||||||||||||||| ||||||||||||||||| |
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| T |
3945192 |
ctcagttcaagttcaaggtcatctttaatttggtacctttg |
3945152 |
T |
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