View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16905_low_39 (Length: 234)
Name: NF16905_low_39
Description: NF16905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16905_low_39 |
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Alignment Details
Target: chr1 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 18 - 211
Target Start/End: Original strand, 2040275 - 2040468
Alignment:
| Q |
18 |
atgaatatcagatccaagatgcagcaaccacttctttttcatgaatattgagtaaaatggtggggatttagggttgcaattgttggacttgggttatgta |
117 |
Q |
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| T |
2040275 |
atgaatattagatccaagatgcagcaaccacttctttttcatgaatattgagtaaaatggtggggatttagggttgcaattgttggactttggttatgta |
2040374 |
T |
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| Q |
118 |
agtttaatatagaatgctataaaaactgaaataggttgcacatagaaaatgcaaaaatcacatttttgtcgtcattcaaaattaagaagcgtta |
211 |
Q |
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| T |
2040375 |
agttaaatatagaatgctataaaaactgaaataggttgcacatagaaaatgcaaaaatcacattgttgtcgtcattcaaaattaagaagcgtta |
2040468 |
T |
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