View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16905_low_40 (Length: 234)

Name: NF16905_low_40
Description: NF16905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16905_low_40
NF16905_low_40
[»] chr3 (2 HSPs)
chr3 (11-227)||(13219260-13219476)
chr3 (168-227)||(13217036-13217095)
[»] scaffold0002 (2 HSPs)
scaffold0002 (12-223)||(238234-238445)
scaffold0002 (156-223)||(240602-240669)
[»] chr4 (1 HSPs)
chr4 (132-227)||(18176963-18177058)
[»] chr2 (1 HSPs)
chr2 (11-66)||(10996334-10996389)
[»] chr5 (1 HSPs)
chr5 (168-227)||(39047942-39048001)
[»] chr7 (1 HSPs)
chr7 (136-224)||(14541323-14541411)
[»] scaffold0380 (1 HSPs)
scaffold0380 (168-227)||(15664-15723)
[»] chr1 (1 HSPs)
chr1 (182-227)||(39386263-39386308)


Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 11 - 227
Target Start/End: Complemental strand, 13219476 - 13219260
Alignment:
Q  11 agaagtaatgacccctaatgaggctagagcaaggcctaattgaaaatgaattgaattattgattgtgtcataaagacccttatgtccacgccccaatcta 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  13219476 agaagtaatgacccctaatgaggctagagcaaggcctaattgaaaatgaattgaattattgattgtgtcataaagacccttatgtccacggcccaatcta 13219377  T
Q  111 ccccccggaggaatatgtgcttctaaaatctcttttatactgtgcccaataccgaagttagttctatacatatgaccagcaatgagaaaaagaattgcaa 210  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13219376 ccccccggaggaatatgtgcttctaaaatatcttttatactgtgcccaataccgaagttagttctatacatatgaccagcaatgagaaaaagaattgcaa 13219277  T
Q  211 tagctaaatgatgatgt 227  Q
    |||||||||||||||||    
T  13219276 tagctaaatgatgatgt 13219260  T

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Target: chr3; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 168 - 227
Target Start/End: Complemental strand, 13217095 - 13217036
Alignment:
Q  168 ttagttctatacatatgaccagcaatgagaaaaagaattgcaatagctaaatgatgatgt 227  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  13217095 ttagttctatacatatgaccggcaatgagaaaaagaattgcaatagctaaatgatgatgt 13217036  T

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Target: scaffold0002 (Bit Score: 124; Significance: 6e-64; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 12 - 223
Target Start/End: Original strand, 238234 - 238445
Alignment:
Q  12 gaagtaatgacccctaatgaggctagagcaaggcctaattgaaaatgaattgaattattgattgtgtcataaagacccttatgtccacgccccaatctac 111  Q
    |||||||| |||||||| || ||||||||||| ||||| ||||||||||| ||||| ||||||||||||||||| |||||||| |||||||| |||| ||    
T  238234 gaagtaataacccctaaagaagctagagcaagacctaactgaaaatgaatcgaattgttgattgtgtcataaaggcccttatgcccacgccctaatcgac 238333  T
Q  112 cccccggaggaatatgtgcttctaaaatctcttttatactgtgcccaataccgaagttagttctatacatatgaccagcaatgagaaaaagaattgcaat 211  Q
    ||||||||||| |||| ||||||||||  ||||| |||||||||||||| ||||||||||||| |||||| ||||| ||||||||||||| || ||||||    
T  238334 cccccggaggagtatgcgcttctaaaagatctttaatactgtgcccaattccgaagttagttcgatacatgtgaccggcaatgagaaaaataaatgcaat 238433  T
Q  212 agctaaatgatg 223  Q
    ||||||||||||    
T  238434 agctaaatgatg 238445  T

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Target: scaffold0002; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 223
Target Start/End: Original strand, 240602 - 240669
Alignment:
Q  156 ccaataccgaagttagttctatacatatgaccagcaatgagaaaaagaattgcaatagctaaatgatg 223  Q
    ||||||||  |||| || |||||||||||||| || || || |||||||| |||||||||||||||||    
T  240602 ccaataccccagttggtcctatacatatgacctgcgattaggaaaagaatagcaatagctaaatgatg 240669  T

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Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 132 - 227
Target Start/End: Original strand, 18176963 - 18177058
Alignment:
Q  132 tctaaaatctcttttatactgtgcccaataccgaagttagttctatacatatgaccagcaatgagaaaaagaattgcaatagctaaatgatgatgt 227  Q
    |||||||| ||| ||||||  || ||||||||  | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  18176963 tctaaaatatctcttataccatgaccaataccccaattagttctatacatatgaccggcaatgagaaaaagaattgcaatagctaaatgatgatgt 18177058  T

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Target: chr2 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 11 - 66
Target Start/End: Complemental strand, 10996389 - 10996334
Alignment:
Q  11 agaagtaatgacccctaatgaggctagagcaaggcctaattgaaaatgaattgaat 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10996389 agaagtaatgacccctaatgaggctagagcaaggcctaattgaaaatgaattgaat 10996334  T

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Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 168 - 227
Target Start/End: Complemental strand, 39048001 - 39047942
Alignment:
Q  168 ttagttctatacatatgaccagcaatgagaaaaagaattgcaatagctaaatgatgatgt 227  Q
    |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  39048001 ttagttctatacatatgaccggtaatgagaaaaagaattgcaatagctaaatgatgatgt 39047942  T

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Target: chr7 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 136 - 224
Target Start/End: Original strand, 14541323 - 14541411
Alignment:
Q  136 aaatctcttttatactgtgcccaataccgaagttagttctatacatatgaccagcaatgagaaaaagaattgcaatagctaaatgatga 224  Q
    |||| ||||||||||  || |||||| |  |||||||| |||||||||||||  ||||||||||||||||||||||||| |||||||||    
T  14541323 aaatatcttttataccatgaccaatatcccagttagttttatacatatgaccgacaatgagaaaaagaattgcaatagcaaaatgatga 14541411  T

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Target: scaffold0380 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 168 - 227
Target Start/End: Complemental strand, 15723 - 15664
Alignment:
Q  168 ttagttctatacatatgaccagcaatgagaaaaagaattgcaatagctaaatgatgatgt 227  Q
    |||||||||||||||||||  |||||| ||||||||||||||||||||| ||||||||||    
T  15723 ttagttctatacatatgactggcaatgtgaaaaagaattgcaatagctagatgatgatgt 15664  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 182 - 227
Target Start/End: Complemental strand, 39386308 - 39386263
Alignment:
Q  182 atgaccagcaatgagaaaaagaattgcaatagctaaatgatgatgt 227  Q
    |||||| |||||| ||||||||||| ||||||||||||||||||||    
T  39386308 atgaccggcaatgcgaaaaagaattacaatagctaaatgatgatgt 39386263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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