View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16905_low_43 (Length: 215)
Name: NF16905_low_43
Description: NF16905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16905_low_43 |
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Alignment Details
Target: chr3 (Bit Score: 178; Significance: 3e-96; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 16 - 197
Target Start/End: Complemental strand, 48139963 - 48139782
Alignment:
| Q |
16 |
ctaaaatgactctgtttaaatataaatctttaaaaagttagcagtaaatgagagaagataacaaaatattaatattcaaatcattaaaatgaagacaatg |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
48139963 |
ctaaaatgactctgtttaaatataaatctttaaaaagttagcagtaaatgagagaagattacaaaatattaatattcaaatcattaaaatgaagacaatg |
48139864 |
T |
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| Q |
116 |
tgaagtgcattttgtagcaatgtttaaccccaaattataacattaagcaagttaagattctaaatgcaatgcaaatagatct |
197 |
Q |
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| T |
48139863 |
tgaagtgcattttgtagcaatgtttaaccccaaattataacattaagcaagttaagattctaaatgcaatgcaaatagatct |
48139782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 36 - 201
Target Start/End: Original strand, 48124889 - 48125053
Alignment:
| Q |
36 |
tataaatctttaaaaagttagcagtaaatgagagaagataacaaaatattaatattcaaatcattaaaatgaagacaatgtgaagtgcattttgtagcaa |
135 |
Q |
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|||||||| | |||||||| |||||||| ||||||| |||||||| | |||||||||||||||||||| |||| |||| |||||||||||||| ||| |
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| T |
48124889 |
tataaatcatcaaaaagtttgcagtaaacgagagaaaataacaaagcactaatattcaaatcattaaaaa-aagattatgtcaagtgcattttgtaacaa |
48124987 |
T |
|
| Q |
136 |
tgtttaaccccaaattataacattaagcaagttaagattctaaatgcaatgcaaatagatctgtgc |
201 |
Q |
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| T |
48124988 |
tgtttaacctcaaatcataacattcaacaagttgagattctaaatgcaatgcatatagacctgtgc |
48125053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 33 - 192
Target Start/End: Original strand, 48134976 - 48135138
Alignment:
| Q |
33 |
aaatataaatctttaaaaagttagcagtaaatgagagaagataacaaaatattaatattcaaatcattaaaatgaagacaatg---tgaagtgcattttg |
129 |
Q |
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||||||||||| | |||||||| | ||||| ||| ||||||| | || | ||||||||||| ||||||||| |||||||| | ||||| ||| || |
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| T |
48134976 |
aaatataaatcatcaaaaagttgtctgtaaacgagtgaagatagcgaagtgttaatattcaagtcattaaaaagaagacaactacatcaagtgaattatg |
48135075 |
T |
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| Q |
130 |
tagcaatgtttaaccccaaattataacattaagcaagttaagattctaaatgcaatgcaaata |
192 |
Q |
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||||||||||||||| ||||| |||||| | ||| |||||||||||||||||||||||||||| |
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| T |
48135076 |
tagcaatgtttaacctcaaatcataacactcagcgagttaagattctaaatgcaatgcaaata |
48135138 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 34 - 116
Target Start/End: Original strand, 48114886 - 48114967
Alignment:
| Q |
34 |
aatataaatctttaaaaagttagcagtaaatgagagaagataacaaaatattaatattcaaatcattaaaatgaagacaatgt |
116 |
Q |
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|||||||||| | |||||||||||||||||| |||||||||| |||| |||| ||||| ||||||||||| |||||| |||| |
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| T |
48114886 |
aatataaatcataaaaaagttagcagtaaataagagaagatagcaaagtatt-atatttaaatcattaaatagaagactatgt |
48114967 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 106 - 192
Target Start/End: Original strand, 48114992 - 48115078
Alignment:
| Q |
106 |
gaagacaatgtgaagtgcattttgtagcaatgtttaaccccaaattataacattaagcaagttaagattctaaatgcaatgcaaata |
192 |
Q |
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|||||| |||| ||||| |||||||||||||||| |||| ||||| |||||| | |||||||| |||||||||| |||| |||||| |
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| T |
48114992 |
gaagactatgtcaagtgaattttgtagcaatgttcaacctcaaatcataacactcagcaagtttagattctaaaatcaatacaaata |
48115078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 111; Significance: 3e-56; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 16 - 126
Target Start/End: Complemental strand, 25252602 - 25252492
Alignment:
| Q |
16 |
ctaaaatgactctgtttaaatataaatctttaaaaagttagcagtaaatgagagaagataacaaaatattaatattcaaatcattaaaatgaagacaatg |
115 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25252602 |
ctaaaatgactctgtttaaatataaatctttaaaaagttagcagtaaatgagagaagataacaaaatattaatattcaaatcattaaaatgaagacaatg |
25252503 |
T |
|
| Q |
116 |
tgaagtgcatt |
126 |
Q |
| |
|
||||||||||| |
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| T |
25252502 |
tgaagtgcatt |
25252492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 33 - 192
Target Start/End: Original strand, 25245377 - 25245539
Alignment:
| Q |
33 |
aaatataaatctttaaaaagttagcagtaaatgagagaagataacaaaatattaatattcaaatcattaaaatgaagacaatg---tgaagtgcattttg |
129 |
Q |
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||||||||||| | |||||||| | ||||| ||| ||||||| | || ||||||||||||| ||||||||| |||||||| | ||||| ||| || |
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| T |
25245377 |
aaatataaatcatcaaaaagttgtctgtaaacgagtgaagatagcgaagtattaatattcaagtcattaaaaagaagacaactacatcaagtgaattatg |
25245476 |
T |
|
| Q |
130 |
tagcaatgtttaaccccaaattataacattaagcaagttaagattctaaatgcaatgcaaata |
192 |
Q |
| |
|
||||||||||||||| ||||| |||||| | | | |||||| ||||||||||||||||||||| |
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|
| T |
25245477 |
tagcaatgtttaacctcaaatcataacactcaacgagttaaaattctaaatgcaatgcaaata |
25245539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 156 - 201
Target Start/End: Complemental strand, 25252495 - 25252450
Alignment:
| Q |
156 |
cattaagcaagttaagattctaaatgcaatgcaaatagatctgtgc |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
25252495 |
cattaagcaagttaagattctaaatgcaatgcaaatagatatgtgc |
25252450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 9e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 61 - 200
Target Start/End: Complemental strand, 32011308 - 32011170
Alignment:
| Q |
61 |
aaatgagagaagataacaaaatattaatattcaaatcattaaaatgaagacaatgtgaagtgcattttgtagcaatgtttaaccccaaattataacatta |
160 |
Q |
| |
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||||||||||||||| |||| |||||||||||||||||||| || ||||| |||| || | |||| ||||| |||||| |||| ||||| |||||| | |
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| T |
32011308 |
aaatgagagaagatagcaaagtattaatattcaaatcattataaaaaagactatgttaattacattctgtagaaatgttgaacctcaaataataacactc |
32011209 |
T |
|
| Q |
161 |
agcaagttaagattctaaatgcaatgcaaatagatctgtg |
200 |
Q |
| |
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||| || |||||||||||||| |||||||||||||||||| |
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| T |
32011208 |
agc-aggtaagattctaaatgtaatgcaaatagatctgtg |
32011170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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