View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16905_low_6 (Length: 612)

Name: NF16905_low_6
Description: NF16905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16905_low_6
NF16905_low_6
[»] chr2 (3 HSPs)
chr2 (16-591)||(15125383-15125967)
chr2 (121-193)||(37561688-37561760)
chr2 (118-190)||(29823487-29823559)
[»] chr4 (3 HSPs)
chr4 (116-210)||(22683840-22683934)
chr4 (119-193)||(29903993-29904067)
chr4 (116-180)||(18597016-18597080)
[»] chr5 (2 HSPs)
chr5 (119-193)||(42439649-42439723)
chr5 (116-154)||(10898699-10898737)
[»] chr6 (1 HSPs)
chr6 (115-175)||(10874330-10874390)
[»] chr8 (5 HSPs)
chr8 (115-154)||(38203261-38203300)
chr8 (116-154)||(5997353-5997391)
chr8 (119-193)||(7437651-7437725)
chr8 (119-148)||(9575423-9575452)
chr8 (122-154)||(1836283-1836315)
[»] chr3 (3 HSPs)
chr3 (119-159)||(23290272-23290312)
chr3 (57-85)||(42458516-42458544)
chr3 (118-154)||(43244438-43244474)


Alignment Details
Target: chr2 (Bit Score: 445; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 16 - 591
Target Start/End: Complemental strand, 15125967 - 15125383
Alignment:
Q  16 cataggcaggaagagaggacactataaacttaaggagaatgatcaaccgaccacccaaagataaatttttctcttcctttaacatatttgtctatttgta 115  Q
    |||||| |||||||||||||| || ||| |||||||||||||||||| |||||  |||||||||||||||||| ||||||||||||||||||||||| ||    
T  15125967 cataggtaggaagagaggacagtacaaagttaaggagaatgatcaactgaccattcaaagataaatttttctcctcctttaacatatttgtctattttta 15125868  T
Q  116 taaaattgattttgcctctaaagttgattctaacttgaaactataatctataacttttgattctaaatgtgatttttaaagtgaaacttattgttgcatt 215  Q
    |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15125867 taaaattggtttcgcctctaaagttgattctaacttgaaactataatctataacttttgattctaaatgtgatttttaaagtgaaacttattgttgcatt 15125768  T
Q  216 taaacataagccattttatattcacctcacctttttcgttttataaaaccaattaatttaaaatcaacttttgtagtctcataaccaaacatgccctacg 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  15125767 taaacataagccattttatattcacctcacctttttcgttttataaaaccaattaatttaaaatcaacttttgtagtctcataaccaaacatgccctaag 15125668  T
Q  316 acattcaaaatctcataacccatcctaaagagcaacgaaaagggaagcttatga--tatcacgtggaacatatccataaat---------aattttaagc 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||  |||||||||         || |||||||    
T  15125667 acattcaaaatctcataacccatcctaaagagcaacgaaaagggaagcttatgacgtatcacgtggaacacgtccataaataaataagtaaaatttaagc 15125568  T
Q  405 ttttccaaaagttaggaaatgtgattcataggccaaggtttttggcccttagcaagcggtattcgatattaacgttgatactccaaacaatacctgacgc 504  Q
      |||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| ||  ||||||||||||||||||||||    
T  15125567 --ttccaaaagttagggaatgtgattcctaggccaaggtttttggcccttagcaaacggtattcgatattaaccttagtactccaaacaatacctgacgc 15125470  T
Q  505 tgtttcgcagctaaataccaccttagaacgcggccaaggtttttgtttttgcgcatcattgtttgcacttttcctatttataccttc 591  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15125469 tgtttcgcagctaaataccaccttagaacgcgaccaaggtttttgtttttgcgcatcattgtttgcacttttcctatttataccttc 15125383  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 121 - 193
Target Start/End: Original strand, 37561688 - 37561760
Alignment:
Q  121 ttgattttgcctctaaagttgattctaacttgaaactataatctataacttttgattctaaatgtgattttta 193  Q
    ||||||||||||||| | ||||||||||||||||||||  || | || ||||||| |  ||||||||||||||    
T  37561688 ttgattttgcctctataattgattctaacttgaaactacgatttgtaccttttgacttcaaatgtgattttta 37561760  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 118 - 190
Target Start/End: Original strand, 29823487 - 29823559
Alignment:
Q  118 aaattgattttgcctctaaagttgattctaacttgaaactataatctataacttttgattctaaatgtgattt 190  Q
    |||||||||||||||||||| ||||||| |||||||| |||  || | || |||||||  | |||||||||||    
T  29823487 aaattgattttgcctctaaaattgattcaaacttgaatctaagatttgtagcttttgaccccaaatgtgattt 29823559  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 116 - 210
Target Start/End: Original strand, 22683840 - 22683934
Alignment:
Q  116 taaaattgattttgcctctaaagttgattctaacttgaaactataatctataacttttgattctaaatgtgatttttaaagtgaaacttattgtt 210  Q
    |||||||||||||||||| | | || ||| ||||||||| |||| |||| || ||||||| |||||| |||||||||| | ||||| ||||||||    
T  22683840 taaaattgattttgcctccagaattaattataacttgaagctatgatctgtagcttttgagtctaaacgtgatttttacattgaaatttattgtt 22683934  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 119 - 193
Target Start/End: Original strand, 29903993 - 29904067
Alignment:
Q  119 aattgattttgcctctaaagttgattctaacttgaaactataatctataacttttgattctaaatgtgattttta 193  Q
    ||||||||||| ||||||| |||||||||||||||| ||||| | | |||||||||| || ||| ||||||||||    
T  29903993 aattgattttgactctaaaattgattctaacttgaagctatattttgtaacttttgactccaaaagtgattttta 29904067  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 116 - 180
Target Start/End: Original strand, 18597016 - 18597080
Alignment:
Q  116 taaaattgattttgcctctaaagttgattctaacttgaaactataatctataacttttgattcta 180  Q
    ||||||||||||| |||| | | |||||||||||||||| ||||||| |  | ||||||||||||    
T  18597016 taaaattgattttacctccagaattgattctaacttgaagctataatttgaaccttttgattcta 18597080  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 119 - 193
Target Start/End: Complemental strand, 42439723 - 42439649
Alignment:
Q  119 aattgattttgcctctaaagttgattctaacttgaaactataatctataacttttgattctaaatgtgattttta 193  Q
    |||||||||| |||| | | |||||||||||||||| ||| ||||| || ||||||| |||||| ||||||||||    
T  42439723 aattgatttttcctccagaattgattctaacttgaagctagaatctgtagcttttgagtctaaacgtgattttta 42439649  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 116 - 154
Target Start/End: Original strand, 10898699 - 10898737
Alignment:
Q  116 taaaattgattttgcctctaaagttgattctaacttgaa 154  Q
    |||||||||||||||||||| | ||||||||||||||||    
T  10898699 taaaattgattttgcctctagaattgattctaacttgaa 10898737  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 115 - 175
Target Start/End: Complemental strand, 10874390 - 10874330
Alignment:
Q  115 ataaaattgattttgcctctaaagttgattctaacttgaaactataatctataacttttga 175  Q
    ||||||||||||||||||||  | |||||||||||||||||| ||||| | || |||||||    
T  10874390 ataaaattgattttgcctctgtaattgattctaacttgaaacaataatttgtagcttttga 10874330  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 115 - 154
Target Start/End: Original strand, 38203261 - 38203300
Alignment:
Q  115 ataaaattgattttgcctctaaagttgattctaacttgaa 154  Q
    ||||||||||||||||||||| |||| |||||||||||||    
T  38203261 ataaaattgattttgcctctagagtttattctaacttgaa 38203300  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 116 - 154
Target Start/End: Complemental strand, 5997391 - 5997353
Alignment:
Q  116 taaaattgattttgcctctaaagttgattctaacttgaa 154  Q
    ||||||||||||||||||||||  |||||||||||||||    
T  5997391 taaaattgattttgcctctaaaagtgattctaacttgaa 5997353  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 119 - 193
Target Start/End: Complemental strand, 7437725 - 7437651
Alignment:
Q  119 aattgattttgcctctaaagttgattctaacttgaaactataatctataacttttgattctaaatgtgattttta 193  Q
    ||||||||||| ||||| | |||||||||| |||||||||| || ||||  |||||| |||||| |||| |||||    
T  7437725 aattgattttgactctagaattgattctaatttgaaactatgatttatagtttttgactctaaacgtgagtttta 7437651  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 148
Target Start/End: Original strand, 9575423 - 9575452
Alignment:
Q  119 aattgattttgcctctaaagttgattctaa 148  Q
    ||||||||||||||||||||||||||||||    
T  9575423 aattgattttgcctctaaagttgattctaa 9575452  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 122 - 154
Target Start/End: Complemental strand, 1836315 - 1836283
Alignment:
Q  122 tgattttgcctctaaagttgattctaacttgaa 154  Q
    |||||||||||||||| ||||||||||||||||    
T  1836315 tgattttgcctctaaaattgattctaacttgaa 1836283  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 119 - 159
Target Start/End: Original strand, 23290272 - 23290312
Alignment:
Q  119 aattgattttgcctctaaagttgattctaacttgaaactat 159  Q
    |||||||| || ||||| |||||||||||||||||||||||    
T  23290272 aattgattatgtctctatagttgattctaacttgaaactat 23290312  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 57 - 85
Target Start/End: Complemental strand, 42458544 - 42458516
Alignment:
Q  57 atcaaccgaccacccaaagataaattttt 85  Q
    |||||||||||||||||||||||||||||    
T  42458544 atcaaccgaccacccaaagataaattttt 42458516  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 118 - 154
Target Start/End: Complemental strand, 43244474 - 43244438
Alignment:
Q  118 aaattgattttgcctctaaagttgattctaacttgaa 154  Q
    |||||||||||||||||||| |||||| |||||||||    
T  43244474 aaattgattttgcctctaaaattgattttaacttgaa 43244438  T

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