View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16905_low_8 (Length: 528)
Name: NF16905_low_8
Description: NF16905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16905_low_8 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 478; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 18 - 515
Target Start/End: Original strand, 32142591 - 32143088
Alignment:
| Q |
18 |
gacccttctccaccactataagtatcaccatgatagattggttcaacaacaccttctccaagataaccccttggaaagtgggcctcatcatgaacaactg |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32142591 |
gacccttctccaccactataagtatcaccatgatagattggctcaacagcaccttctccaagataaccccttggaaagtgggcctcatcatgaacaactg |
32142690 |
T |
|
| Q |
118 |
aagaaggaagagaagtagttgtccccctagaagtcccagtcacatgatggtaaccggtcggagtttgaaaaactgtcgagaagggagtcggctgaggaaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
32142691 |
aagaaggaagagaagtagttgtccccctagaagtcccagtcacatgatggtaaccggtcggagtttgaaaaactgtcgagaagggagttggctgaggaaa |
32142790 |
T |
|
| Q |
218 |
acgggggttgttaaaaggaagggaaatattctcttcattaacaacaccattttctctccgatgaaaatttcggtgacagttacacgcagcacatgtgaaa |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32142791 |
acgggggttgttaaaaggaagggaaatattctcttcattaacaacaccattttctctccgatgaaaatttcggtgacagttacacgcagcacatgtgaaa |
32142890 |
T |
|
| Q |
318 |
aattcgatggttccttcaattccagcgggtaaaaactcgccacaaccatcaagagcgtagcctccaatgctggaagcgtgattctttctacactctttga |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32142891 |
aattcgatggttccttcaattccagcgggtaaaaactcgccacaaccatcaagagcgtagcctccaatgctggaagcgtgattctttctacactctttga |
32142990 |
T |
|
| Q |
418 |
agtttctttcaaagctattgctttgagaattcattagggtttcttcatcatgatcattcgaggttgtagttgtttcaacgtaatttgttggttcagta |
515 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
32142991 |
agtttctttcaaagctattgctttgagaattcattagggtttcttcaacatgatcattcgaggttgtagttgtttcaacgtaacttgttggttcagta |
32143088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 414; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 18 - 515
Target Start/End: Original strand, 28905488 - 28905985
Alignment:
| Q |
18 |
gacccttctccaccactataagtatcaccatgatagattggttcaacaacaccttctccaagataaccccttggaaagtgggcctcatcatgaacaactg |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
28905488 |
gacccttctccaccactataagtatcaccatgatagattggctcaacaaaaccttctccaagatcaccccttggaaagtgggcctcatcatgaacaactg |
28905587 |
T |
|
| Q |
118 |
aagaaggaagagaagtagttgtccccctagaagtcccagtcacatgatggtaaccggtcggagtttgaaaaactgtcgagaagggagtcggctgaggaaa |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || || ||||||||||||||||| || |
|
|
| T |
28905588 |
aagaaggaagagaagtagttgtccccctagaagtccccgtcacatgatggtaaccggtcggagtttgaaaaaccgttgaaaagggagtcggctgagggaa |
28905687 |
T |
|
| Q |
218 |
acgggggttgttaaaaggaagggaaatattctcttcattaacaacaccattttctctccgatgaaaatttcggtgacagttacacgcagcacatgtgaaa |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||| |
|
|
| T |
28905688 |
acgggggttgttaaaaggaagggaaatattctcttcattaacaacaccattttctctccgatgaaaatttcggtgacagttacacgcggcgcatttgaaa |
28905787 |
T |
|
| Q |
318 |
aattcgatggttccttcaattccagcgggtaaaaactcgccacaaccatcaagagcgtagcctccaatgctggaagcgtgattctttctacactctttga |
417 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
28905788 |
aattcgatggtcccttcaattccagcgggtaaaaactcgccacaaccatcaagagcgtagcctccaatgctggaagcatgattctttctacactctttga |
28905887 |
T |
|
| Q |
418 |
agtttctttcaaagctattgctttgagaattcattagggtttcttcatcatgatcattcgaggttgtagttgtttcaacgtaatttgttggttcagta |
515 |
Q |
| |
|
| ||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
28905888 |
acttttcttcgaagctattgctttgagaattcattagggtttcttcatcatgatgattcaaggttttagttgtttcaacgtaacttgttggttcagta |
28905985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 338 - 392
Target Start/End: Complemental strand, 15978529 - 15978475
Alignment:
| Q |
338 |
tccagcgggtaaaaactcgccacaaccatcaagagcgtagcctccaatgctggaa |
392 |
Q |
| |
|
|||||| ||||||||||| | |||||||||||||| |||||||||||| |||||| |
|
|
| T |
15978529 |
tccagcaggtaaaaactcacgacaaccatcaagagagtagcctccaatactggaa |
15978475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University