View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16906_high_12 (Length: 218)

Name: NF16906_high_12
Description: NF16906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16906_high_12
NF16906_high_12
[»] chr4 (2 HSPs)
chr4 (1-209)||(4624579-4624787)
chr4 (1-50)||(4600411-4600460)
[»] chr6 (2 HSPs)
chr6 (127-198)||(34486289-34486360)
chr6 (122-194)||(31799316-31799388)
[»] chr1 (1 HSPs)
chr1 (123-182)||(31478125-31478184)
[»] scaffold0330 (1 HSPs)
scaffold0330 (123-193)||(16982-17052)
[»] scaffold0240 (1 HSPs)
scaffold0240 (123-193)||(1000-1070)
[»] chr2 (3 HSPs)
chr2 (2-83)||(18803868-18803949)
chr2 (120-165)||(33413657-33413702)
chr2 (121-165)||(28028183-28028227)
[»] chr7 (1 HSPs)
chr7 (123-165)||(37749243-37749285)


Alignment Details
Target: chr4 (Bit Score: 181; Significance: 6e-98; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 4624787 - 4624579
Alignment:
Q  1 attattgatccaggtcaaataccatacataaccctttttcattgggatcttccccaggccttacaagatgattatggaggctttgtcagtgagaatatta 100  Q
    ||||||||||||||||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  4624787 attattgatccaggtcaaataccatatgtgaccctttttcattgggatcttccccaggccttacaagatgattatggaggctttgtcagcgagaatatta 4624688  T
Q  101 ggtaagtatcttgacacaaatttgatagaaaatgcacatacagaattgcgagaaagattagaatgttttggatacttcagaacgttatgtactgagatta 200  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  4624687 ggtaagtatcgtgacacaaatttgatagaaaatgcacatacagaattgcgagaaagattagaatgttttggatacttcagaactttatgtactgagatta 4624588  T
Q  201 gaataatct 209  Q
    |||| ||||    
T  4624587 gaatgatct 4624579  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 4600460 - 4600411
Alignment:
Q  1 attattgatccaggtcaaataccatacataaccctttttcattgggatct 50  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  4600460 attattgatccaggtcaaataccatatgtaaccctttttcattgggatct 4600411  T

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Target: chr6 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 127 - 198
Target Start/End: Original strand, 34486289 - 34486360
Alignment:
Q  127 agaaaatgcacatacagaattgcgagaaagattagaatgttttggatacttcagaacgttatgtactgagat 198  Q
    |||| ||||||||||| ||| | |||||||||||||||||| || ||||||||  |||||||||||||||||    
T  34486289 agaacatgcacatacataatcgagagaaagattagaatgttctgaatacttcaacacgttatgtactgagat 34486360  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 194
Target Start/End: Complemental strand, 31799388 - 31799316
Alignment:
Q  122 ttgatagaaaatgcacatacagaattgcgagaaagattagaatgttttggatacttcagaacgttatgtactg 194  Q
    ||||||||| ||| ||||||| | ||| |||||| |||||||||||  |||||||| |||||||| |||||||    
T  31799388 ttgatagaacatgaacatacaaagttgagagaaaaattagaatgttcgggatactttagaacgttctgtactg 31799316  T

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Target: chr1 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 123 - 182
Target Start/End: Complemental strand, 31478184 - 31478125
Alignment:
Q  123 tgatagaaaatgcacatacagaattgcgagaaagattagaatgttttggatacttcagaa 182  Q
    |||||||| || |||||||||||||| ||||||||||| |||||||||||||||| ||||    
T  31478184 tgatagaacatacacatacagaattgagagaaagattaaaatgttttggatactttagaa 31478125  T

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Target: scaffold0330 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 123 - 193
Target Start/End: Original strand, 16982 - 17052
Alignment:
Q  123 tgatagaaaatgcacatacagaattgcgagaaagattagaatgttttggatacttcagaacgttatgtact 193  Q
    |||||||| |||||||||||||||   |||||||||||||||||| ||| ||||||||||| || ||||||    
T  16982 tgatagaacatgcacatacagaatcaagagaaagattagaatgttatgggtacttcagaacattctgtact 17052  T

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Target: scaffold0240 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 123 - 193
Target Start/End: Original strand, 1000 - 1070
Alignment:
Q  123 tgatagaaaatgcacatacagaattgcgagaaagattagaatgttttggatacttcagaacgttatgtact 193  Q
    |||||||| |||||||||||||||   |||||||||||||||||| ||| ||||||||||| || ||||||    
T  1000 tgatagaacatgcacatacagaatcaagagaaagattagaatgttatgggtacttcagaacattctgtact 1070  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 83
Target Start/End: Original strand, 18803868 - 18803949
Alignment:
Q  2 ttattgatccaggtcaaataccatacataaccctttttcattgggatcttccccaggccttacaagatgattatggaggctt 83  Q
    ||||||||||||||| | |||||||  | ||||||||||||| |||| |||||||| ||||||  ||||| ||||| |||||    
T  18803868 ttattgatccaggtctagtaccatatgtgaccctttttcattcggattttccccagaccttacttgatgagtatggtggctt 18803949  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 120 - 165
Target Start/End: Original strand, 33413657 - 33413702
Alignment:
Q  120 atttgatagaaaatgcacatacagaattgcgagaaagattagaatg 165  Q
    ||||||||||| ||||||||||| ||||| |||||||| |||||||    
T  33413657 atttgatagaacatgcacatacataattgagagaaagaatagaatg 33413702  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 165
Target Start/End: Complemental strand, 28028227 - 28028183
Alignment:
Q  121 tttgatagaaaatgcacatacagaattgcgagaaagattagaatg 165  Q
    |||||||||| ||||||||||| ||||| |||||| |||||||||    
T  28028227 tttgatagaacatgcacatacataattgagagaaatattagaatg 28028183  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 165
Target Start/End: Original strand, 37749243 - 37749285
Alignment:
Q  123 tgatagaaaatgcacatacagaattgcgagaaagattagaatg 165  Q
    |||||||| ||||||||||| ||||| ||||||||||||||||    
T  37749243 tgatagaacatgcacatacataattgagagaaagattagaatg 37749285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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