View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16906_high_6 (Length: 377)

Name: NF16906_high_6
Description: NF16906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16906_high_6
NF16906_high_6
[»] scaffold0360 (1 HSPs)
scaffold0360 (12-360)||(15812-16152)
[»] chr8 (4 HSPs)
chr8 (12-360)||(5861552-5861896)
chr8 (37-227)||(5891579-5891765)
chr8 (238-360)||(5861458-5861581)
chr8 (276-360)||(5891721-5891804)


Alignment Details
Target: scaffold0360 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 12 - 360
Target Start/End: Complemental strand, 16152 - 15812
Alignment:
Q  12 atgaataatatgtagagggaattccaaagcacaaacgaaaatttagtgcatgattgtctgtcttatttcattttaaatgatgaacaaacttacaagcaat 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||    
T  16152 atgaataatatgtagagggaattccaaagcacaaacgaaaatttagtgcatgattgtct----tatttcattttaaatgatgaacaaacttacaagcaat 16057  T
Q  112 ttcccttgatatatactaaaaccattgtcatattagcgtcaattataaagttgcaccattttttcttgctttgaaagggatagttggtagttaaagttct 211  Q
    |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16056 ttcctttgatatatactaaaaccattgtcatattaacgtcaattataaagttgcaccattttttcttgctttgaaagggatagttggtagttaaagttct 15957  T
Q  212 aatcgaaagaagaagatnnnnnnnngttgctagtttatgttctccagggcatgacgtaagtatttgaaagggatagttgctagttaaagttcgaatagat 311  Q
    |||||||||||||||||        ||||||||   |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  15956 aatcgaaagaagaagataaaaaaaagttgctag---atgttctccagggcat-acgtaagtatttgaaagggatagttgctagttaaagttcgaatagat 15861  T
Q  312 agaagaagagagaaaaaagttgctaatttatgttctcgaaggcatacgt 360  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  15860 agaagaagagagaaaaaagttgctagtttatgttctcgaaggcatacgt 15812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 196; Significance: 1e-106; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 12 - 360
Target Start/End: Complemental strand, 5861896 - 5861552
Alignment:
Q  12 atgaataatatgtagagggaattccaaagcacaaacgaaaatttagtgcatgattgtctgtcttatttcattttaaatgatgaacaaacttacaagcaat 111  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |    |||||||||||||||||||||||||||||||||||||    
T  5861896 atgaataatatgtagagggaattctaaagcacaaacgaaaatttagtccatgattgtat----tatttcattttaaatgatgaacaaacttacaagcaat 5861801  T
Q  112 ttcccttgatatatactaaaaccattgtcatattagcgtcaattataaagttgcaccattttttcttgctttgaaagggatagttggtagttaaagttct 211  Q
    |||||||||||||  |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  5861800 ttcccttgatata--ctaaaaccattgtcatattaacgtcaattataaagttgcaccattttttcttgttttgaaagggatagttggtagttaaagttct 5861703  T
Q  212 aatcgaaagaagaagat-nnnnnnnngttgctagtttatgttctccagggcatgacgtaagtatttgaaagggatagttgctagttaaagttcgaataga 310  Q
    |||||||||||||||||         ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||  |||||||||| |||  |    
T  5861702 aatcgaaagaagaagataaaaaaaaagttgctagtttatgttctccagggcat-acgtaagtacttgaaagggatagttgcaggttaaagttcaaatcaa 5861604  T
Q  311 tagaagaag-agagaaaaaag-ttgctaatttatgttctcgaaggcatacgt 360  Q
     |||||||| |||  |||| | |||||| |||||||| || |||||||||||    
T  5861603 aagaagaagaagaataaaatgtttgctagtttatgttttctaaggcatacgt 5861552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 37 - 227
Target Start/End: Original strand, 5891579 - 5891765
Alignment:
Q  37 aaagcacaaacgaaaatttagtgcatgattgtctgtcttatttcattttaaa-tgatgaacaaacttacaa-gcaattt-cccttgatatatactaaaac 133  Q
    ||||||||||||||||||||||||||||||||||    |||||||||| ||| |||| ||||||||||||| |||| || ||||||||||  ||||||||    
T  5891579 aaagcacaaacgaaaatttagtgcatgattgtct----tatttcatttaaaaatgattaacaaacttacaaagcaaattgcccttgatat--actaaaac 5891672  T
Q  134 cattgtcatattagcgtcaattataaagttgcaccattttttcttgctttgaaagggatagttggtagttaaagttctaatcgaaagaagaaga 227  Q
    ||||||||||||| |||||||||||||||||  | || ||||  |  | ||||||||||||||| |||||||||||| ||||||||||||||||    
T  5891673 cattgtcatattaacgtcaattataaagttg-tcgatctttttattttctgaaagggatagttgctagttaaagttcaaatcgaaagaagaaga 5891765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 238 - 360
Target Start/End: Complemental strand, 5861581 - 5861458
Alignment:
Q  238 ttgctagtttatgttctccagggcatgacgtaagtatttgaaagggatagttgctagttaaagttcgaatagatagaagaagagagaa--aaaagttgct 335  Q
    ||||||||||||||| || | ||||| ||||  ||||||||||||||||||||||||||||||||||| |||||||||||||||||||  ||||||||||    
T  5861581 ttgctagtttatgttttctaaggcat-acgtcggtatttgaaagggatagttgctagttaaagttcgattagatagaagaagagagaaaaaaaagttgct 5861483  T
Q  336 aatttatgttctcgaaggcatacgt 360  Q
    | ||||||||||| |||||||||||    
T  5861482 agtttatgttctccaaggcatacgt 5861458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 276 - 360
Target Start/End: Original strand, 5891721 - 5891804
Alignment:
Q  276 tgaaagggatagttgctagttaaagttcgaatagatagaagaagagagaaaaaagttgctaatttatgttctcgaaggcatacgt 360  Q
    |||||||||||||||||||||||||||| ||| || ||||||||||  ||||||||||||   |||||||||| | |||||||||    
T  5891721 tgaaagggatagttgctagttaaagttcaaatcgaaagaagaagaggaaaaaaagttgct-ggttatgttctctagggcatacgt 5891804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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