View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16906_high_8 (Length: 335)
Name: NF16906_high_8
Description: NF16906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16906_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 297; Significance: 1e-167; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 329
Target Start/End: Complemental strand, 38611566 - 38611243
Alignment:
| Q |
1 |
cgccatgctgcctgtttgaaagttgtgtggtcttgacctttcatcggccaagcacatcattaaaagttaatactactatactactcaatctgaataaact |
100 |
Q |
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| T |
38611566 |
cgccatgctgcctgtttgaaagttgtgtggtcttgacctttcatcagccaagcacatcattaaaagttaatactacta-----ctcaatctgaataaact |
38611472 |
T |
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| Q |
101 |
tgctgtcttttttggatggtgttgaataatttactttaaatgctgaaggttccatgatctgtttgagttcgatgaaaagaagagaagctgcagatgacaa |
200 |
Q |
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| T |
38611471 |
tgctgtcttttttggatggtgttgaataatttactttaaatgctgaaggttccatgatctgtttgagttcgatgaaaagaagagaagctgcagatgacaa |
38611372 |
T |
|
| Q |
201 |
ctttcacgtcacaatacaagacaccgtaaatatcatcctgaatctgtccaatcaagtcaatcagctttgtcttcttcatcctgtggtaataccttttttc |
300 |
Q |
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| T |
38611371 |
ctttcacgtcacaatacaagacaccgtaaatatcatcctgaatctgtccaatcaagtcaatcagctttgtcttcttcatcctgtggtaataccttttttt |
38611272 |
T |
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| Q |
301 |
tacttttgcagttcatcacaggttctgct |
329 |
Q |
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| T |
38611271 |
tacttttgcagttcatcacagtttctgct |
38611243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 138 - 292
Target Start/End: Complemental strand, 34726741 - 34726587
Alignment:
| Q |
138 |
aaatgctgaaggttccatgatctgtttgagttcgatgaaaagaagagaagctgcagatgacaactttcacgtcacaatacaagacaccgtaaatatcatc |
237 |
Q |
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| T |
34726741 |
aaatgctgaaggttccatgatctgtttgagtttgatggaaagaagaaaagctgcagacgacaactttcaaatcacaatgcaaggcgccgtaaatatcatc |
34726642 |
T |
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| Q |
238 |
ctgaatctgtccaatcaagtcaatcagctttgtcttcttcatcctgtggtaatac |
292 |
Q |
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| T |
34726641 |
gtcaagctgtccaatcaagccaatcggctttgtcttattcacgcagtggtaatac |
34726587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 138 - 292
Target Start/End: Complemental strand, 34721613 - 34721459
Alignment:
| Q |
138 |
aaatgctgaaggttccatgatctgtttgagttcgatgaaaagaagagaagctgcagatgacaactttcacgtcacaatacaagacaccgtaaatatcatc |
237 |
Q |
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|||| ||||||||||||||||||||||||||| |||| |||||||| |||||||||| ||| ||||||| |||||| |||| | |||||| || || |
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| T |
34721613 |
aaatactgaaggttccatgatctgtttgagtttgatggaaagaagaaaagctgcagacgacgtctttcacaacacaatgcaaggcgccgtaatcattctc |
34721514 |
T |
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| Q |
238 |
ctgaatctgtccaatcaagtcaatcagctttgtcttcttcatcctgtggtaatac |
292 |
Q |
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| T |
34721513 |
gtaaaactgcccaatcaagtcaatcagctttgtcttcgtcaccctgtggtaatac |
34721459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 141 - 274
Target Start/End: Complemental strand, 34730952 - 34730819
Alignment:
| Q |
141 |
tgctgaaggttccatgatctgtttgagttcgatgaaaagaagagaagctgcagatgacaactttcacgtcacaatacaagacaccgtaaatatcatcctg |
240 |
Q |
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|||||||||||||| ||||| |||||||||||||||||| |||||||||||| ||||||||||||||||||| |||| | ||||| |||| |||| |
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| T |
34730952 |
tgctgaaggttccacaatctggctgagttcgatgaaaagaaaagaagctgcagagaacaactttcacgtcacaatgcaaggcgacgtaagcatcagcctg |
34730853 |
T |
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| Q |
241 |
aatctgtccaatcaagtcaatcagctttgtcttc |
274 |
Q |
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|| | |||||||||||||||||| ||||||||| |
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| T |
34730852 |
aagcactccaatcaagtcaatcagttttgtcttc |
34730819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 51 - 129
Target Start/End: Complemental strand, 34726843 - 34726770
Alignment:
| Q |
51 |
agcacatcattaaaagttaatactactatactactcaatctgaataaacttgctgtcttttttggatggtgttgaataa |
129 |
Q |
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| T |
34726843 |
agcacatcattaaaagttaatattaata-----ctcaatctgattcaacttgctgtcttttttggatggtgttgaataa |
34726770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 79 - 124
Target Start/End: Complemental strand, 34730996 - 34730951
Alignment:
| Q |
79 |
tactactcaatctgaataaacttgctgtcttttttggatggtgttg |
124 |
Q |
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| T |
34730996 |
tactactcagtctgattaaacttgctgtcttttttgaatggtgttg |
34730951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 53 - 116
Target Start/End: Complemental strand, 34721713 - 34721655
Alignment:
| Q |
53 |
cacatcattaaaagttaatactactatactactcaatctgaataaacttgctgtcttttttgga |
116 |
Q |
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| T |
34721713 |
cacatcattaaaagttaata-----ttactactcaatctgattcaacttgctgtcttttttgga |
34721655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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