View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16906_low_10 (Length: 270)
Name: NF16906_low_10
Description: NF16906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16906_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 19 - 254
Target Start/End: Complemental strand, 21652600 - 21652362
Alignment:
| Q |
19 |
atagcatacctgaatcatatgccagacgcaacgccaagcttctcgagaaaagactggggccataatttctacaaatctnnnnnnnnn---ggaacgatta |
115 |
Q |
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| T |
21652600 |
atagcatacctgaatcatatgccagacgcaacgccaagcttctcgagaaaagactggggccataatttctacaaatctaaaaaaaaaaaaggaactatta |
21652501 |
T |
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| Q |
116 |
tcatgatagcctaaagaaaataaagcctatcgaaaaagttaagttacatttaaaatttgcatcaaggaagaagaaagaccatacgcggcacaaggaggca |
215 |
Q |
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| T |
21652500 |
tcatgatagcctaatgaaaataaagcctatcgaaaaagttaagttacatttaaaatttgcatcaaggaagaagaaagaccatacgcggcacaaggaggca |
21652401 |
T |
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| Q |
216 |
aatctggactaccacaccagcccggtttctcatctgtaa |
254 |
Q |
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| T |
21652400 |
aatctggactaccacaccagcccggtttctcatctgtaa |
21652362 |
T |
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Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 24 - 96
Target Start/End: Original strand, 40419263 - 40419335
Alignment:
| Q |
24 |
atacctgaatcatatgccagacgcaacgccaagcttctcgagaaaagactggggccataatttctacaaatct |
96 |
Q |
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| T |
40419263 |
atacctgaagcatatgccacacacaacgccatgcttcccgagaaaaagcaggggccataatttccacaaatct |
40419335 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 26 - 93
Target Start/End: Complemental strand, 37456778 - 37456711
Alignment:
| Q |
26 |
acctgaatcatatgccagacgcaacgccaagcttctcgagaaaagactggggccataatttctacaaa |
93 |
Q |
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| T |
37456778 |
acctgaatcatatgccacacgcagcgccatgcttcacgtgaaaacactggagccataatctcaacaaa |
37456711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 26 - 93
Target Start/End: Complemental strand, 39263194 - 39263127
Alignment:
| Q |
26 |
acctgaatcatatgccagacgcaacgccaagcttctcgagaaaagactggggccataatttctacaaa |
93 |
Q |
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||||||||||||||||| || |||||||| |||||||| || || ||||| |||||||| || ||||| |
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| T |
39263194 |
acctgaatcatatgccacacacaacgccatgcttctcgcgagaatactggagccataatctcaacaaa |
39263127 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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