View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16906_low_11 (Length: 239)

Name: NF16906_low_11
Description: NF16906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16906_low_11
NF16906_low_11
[»] chr3 (18 HSPs)
chr3 (69-155)||(39644533-39644619)
chr3 (73-155)||(39645358-39645440)
chr3 (73-134)||(33147329-33147390)
chr3 (69-134)||(33148309-33148374)
chr3 (74-118)||(8652108-8652152)
chr3 (69-122)||(27359857-27359910)
chr3 (69-139)||(24858334-24858404)
chr3 (72-134)||(54285825-54285887)
chr3 (73-122)||(4300930-4300979)
chr3 (69-134)||(27317485-27317550)
chr3 (72-139)||(27473853-27473920)
chr3 (81-134)||(8653987-8654040)
chr3 (69-122)||(28422867-28422920)
chr3 (76-120)||(2841230-2841274)
chr3 (78-122)||(17619166-17619210)
chr3 (73-133)||(29032815-29032875)
chr3 (170-198)||(39645316-39645344)
chr3 (71-151)||(40929851-40929930)
[»] chr4 (18 HSPs)
chr4 (69-155)||(50432804-50432890)
chr4 (76-155)||(50431982-50432061)
chr4 (75-134)||(6311794-6311853)
chr4 (69-139)||(31908358-31908428)
chr4 (69-134)||(6310812-6310877)
chr4 (72-134)||(12206760-12206822)
chr4 (76-134)||(31689177-31689235)
chr4 (73-134)||(12210928-12210989)
chr4 (69-122)||(23088269-23088322)
chr4 (76-134)||(42523970-42524028)
chr4 (69-134)||(12921872-12921937)
chr4 (72-124)||(11791357-11791409)
chr4 (75-134)||(31914522-31914581)
chr4 (71-134)||(48315195-48315258)
chr4 (73-122)||(23089292-23089341)
chr4 (69-122)||(31135163-31135216)
chr4 (69-121)||(20627520-20627572)
chr4 (170-198)||(50432762-50432790)
[»] chr6 (9 HSPs)
chr6 (69-139)||(12441711-12441781)
chr6 (69-134)||(29375053-29375118)
chr6 (69-153)||(10792476-10792559)
chr6 (73-122)||(19237625-19237674)
chr6 (63-134)||(7001783-7001854)
chr6 (76-122)||(8683878-8683924)
chr6 (72-134)||(10793589-10793651)
chr6 (69-122)||(5860543-5860596)
chr6 (98-139)||(14600217-14600258)
[»] chr8 (13 HSPs)
chr8 (69-141)||(23220001-23220073)
chr8 (72-149)||(42757602-42757679)
chr8 (69-139)||(12836691-12836761)
chr8 (69-139)||(18573507-18573577)
chr8 (73-134)||(16106034-16106095)
chr8 (73-134)||(16113274-16113335)
chr8 (76-141)||(23220881-23220946)
chr8 (69-123)||(1274128-1274182)
chr8 (72-134)||(16101519-16101581)
chr8 (69-151)||(5152447-5152528)
chr8 (76-122)||(30971285-30971331)
chr8 (72-122)||(30972028-30972078)
chr8 (76-134)||(44499467-44499525)
[»] chr1 (12 HSPs)
chr1 (15-71)||(33984515-33984571)
chr1 (69-134)||(42026889-42026954)
chr1 (72-134)||(42031703-42031765)
chr1 (62-134)||(17239416-17239488)
chr1 (72-134)||(16801969-16802031)
chr1 (72-153)||(17238593-17238673)
chr1 (72-134)||(48572819-48572881)
chr1 (69-134)||(34267969-34268034)
chr1 (72-153)||(34269076-34269156)
chr1 (72-153)||(34275311-34275391)
chr1 (200-232)||(33984481-33984513)
chr1 (76-124)||(24790870-24790918)
[»] chr2 (4 HSPs)
chr2 (69-139)||(39240859-39240929)
chr2 (71-153)||(32667375-32667457)
chr2 (72-133)||(45631150-45631211)
chr2 (69-121)||(9243987-9244039)
[»] chr5 (4 HSPs)
chr5 (73-139)||(30667861-30667927)
chr5 (69-121)||(31240001-31240053)
chr5 (69-153)||(33471158-33471241)
chr5 (76-155)||(33471843-33471921)
[»] scaffold0112 (2 HSPs)
scaffold0112 (76-139)||(35003-35066)
scaffold0112 (72-139)||(35798-35865)
[»] scaffold0015 (1 HSPs)
scaffold0015 (73-134)||(45330-45391)
[»] scaffold0006 (2 HSPs)
scaffold0006 (69-118)||(162456-162505)
scaffold0006 (69-119)||(162891-162941)
[»] chr7 (10 HSPs)
chr7 (72-139)||(38887327-38887394)
chr7 (72-134)||(5997621-5997683)
chr7 (69-139)||(47552504-47552574)
chr7 (69-122)||(5995246-5995299)
chr7 (74-131)||(27875931-27875988)
chr7 (72-153)||(45550994-45551074)
chr7 (70-122)||(41970882-41970934)
chr7 (72-124)||(43744560-43744612)
chr7 (69-153)||(45551797-45551880)
chr7 (80-134)||(1409380-1409434)
[»] scaffold0676 (1 HSPs)
scaffold0676 (82-134)||(3168-3220)


Alignment Details
Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 69 - 155
Target Start/End: Original strand, 39644533 - 39644619
Alignment:
Q  69 tatggggtttgctacaatagacccacctcttttcatgaaggtccattttagcaagctgcaccttttgcttttggacaaaaagaccaa 155  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39644533 tatgggttttgctacaatagacccacctcttttcatgaaggtccattttagcaagctgcaccttttgcttttggacaaaaagaccaa 39644619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 73 - 155
Target Start/End: Complemental strand, 39645440 - 39645358
Alignment:
Q  73 gggtttgctacaatagacccacctcttttcatgaaggtccattttagcaagctgcaccttttgcttttggacaaaaagaccaa 155  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  39645440 gggtttgctacaatagacccacctctttttatgaaggtccattttagcaagctgtaccttttgcttttggacaaaaagaccaa 39645358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 73 - 134
Target Start/End: Original strand, 33147329 - 33147390
Alignment:
Q  73 gggtttgctacaatagacccacctcttttcatgaaggtccattttagcaagctgcacctttt 134  Q
    ||||||||||||||||||||||||| |||||||||| || ||||||||||| ||||||||||    
T  33147329 gggtttgctacaatagacccacctcatttcatgaagatctattttagcaagatgcacctttt 33147390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 69 - 134
Target Start/End: Complemental strand, 33148374 - 33148309
Alignment:
Q  69 tatggggtttgctacaatagacccacctcttttcatgaaggtccattttagcaagctgcacctttt 134  Q
    ||||| ||||||||||||| ||||||||| ||| ||||||||| ||||||||||| ||||||||||    
T  33148374 tatggcgtttgctacaataaacccacctcattttatgaaggtctattttagcaaggtgcacctttt 33148309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 74 - 118
Target Start/End: Original strand, 8652108 - 8652152
Alignment:
Q  74 ggtttgctacaatagacccacctcttttcatgaaggtccatttta 118  Q
    |||||||||||||||||||||||||||||||||||||| ||||||    
T  8652108 ggtttgctacaatagacccacctcttttcatgaaggtctatttta 8652152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 69 - 122
Target Start/End: Complemental strand, 27359910 - 27359857
Alignment:
Q  69 tatggggtttgctacaatagacccacctcttttcatgaaggtccattttagcaa 122  Q
    ||||||||||||||||||||||||||   |||||||||||||| ||||||||||    
T  27359910 tatggggtttgctacaatagacccactcattttcatgaaggtctattttagcaa 27359857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 69 - 139
Target Start/End: Complemental strand, 24858404 - 24858334
Alignment:
Q  69 tatggggtttgctacaatagacccacctcttttcatgaaggtccattttagcaagctgcaccttttgcttt 139  Q
    |||||| ||||||||||||||||||||  |||| ||||||| |||||||||||   | |||||||||||||    
T  24858404 tatgggatttgctacaatagacccacccttttttatgaaggcccattttagcagctttcaccttttgcttt 24858334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 72 - 134
Target Start/End: Complemental strand, 54285887 - 54285825
Alignment:
Q  72 ggggtttgctacaatagacccacctcttttcatgaaggtccattttagcaagctgcacctttt 134  Q
    |||||||||||||||||||||||   |||| ||||||||| |||||||||| || ||||||||    
T  54285887 ggggtttgctacaatagacccactcatttttatgaaggtctattttagcaacctacacctttt 54285825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 73 - 122
Target Start/End: Original strand, 4300930 - 4300979
Alignment:
Q  73 gggtttgctacaatagacccacctcttttcatgaaggtccattttagcaa 122  Q
    |||||||||||||||||||||| | ||||||||||| || ||||||||||    
T  4300930 gggtttgctacaatagacccacttattttcatgaagatctattttagcaa 4300979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 134
Target Start/End: Complemental strand, 27317550 - 27317485
Alignment:
Q  69 tatggggtttgctacaatagacccacctcttttcatgaaggtccattttagcaagctgcacctttt 134  Q
    |||||||||||||||||||||||| |   |||||||||||||  ||||||||||||  ||||||||    
T  27317550 tatggggtttgctacaatagacccgctcattttcatgaaggtttattttagcaagcaacacctttt 27317485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 139
Target Start/End: Original strand, 27473853 - 27473920
Alignment:
Q  72 ggggtttgctacaatagacccacctct-tttcatgaaggtccattttagcaagctgcaccttttgcttt 139  Q
    ||||||||||||||||||||||| ||| |||  |||||||| ||||||||||| |||||||||| ||||    
T  27473853 ggggtttgctacaatagacccac-tctattttgtgaaggtctattttagcaagatgcaccttttccttt 27473920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 134
Target Start/End: Complemental strand, 8654040 - 8653987
Alignment:
Q  81 tacaatagacccacctcttttcatgaaggtccattttagcaagctgcacctttt 134  Q
    |||||||||||||||| |||||||||||||  |||||| |||  ||||||||||    
T  8654040 tacaatagacccacctattttcatgaaggtttattttaacaaagtgcacctttt 8653987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 122
Target Start/End: Complemental strand, 28422920 - 28422867
Alignment:
Q  69 tatggggtttgctacaatagacccacctcttttcatgaaggtccattttagcaa 122  Q
    ||||||||||||||||||||||||||   |||| ||||| ||| ||||||||||    
T  28422920 tatggggtttgctacaatagacccactcatttttatgaaagtctattttagcaa 28422867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 120
Target Start/End: Complemental strand, 2841274 - 2841230
Alignment:
Q  76 tttgctacaatagacccacctcttttcatgaaggtccattttagc 120  Q
    ||||||||||||||||||| || ||| ||||||||| ||||||||    
T  2841274 tttgctacaatagacccacttcattttatgaaggtctattttagc 2841230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 122
Target Start/End: Complemental strand, 17619210 - 17619166
Alignment:
Q  78 tgctacaatagacccacctcttttcatgaaggtccattttagcaa 122  Q
    |||||||||||||||||   |||||||||||||| ||||||||||    
T  17619210 tgctacaatagacccactcattttcatgaaggtctattttagcaa 17619166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 133
Target Start/End: Complemental strand, 29032875 - 29032815
Alignment:
Q  73 gggtttgctacaatagacccacctcttttcatgaaggtccattttagcaagctgcaccttt 133  Q
    |||||||||||||||||||||    |||| ||||||||| |||||||||| ||| ||||||    
T  29032875 gggtttgctacaatagacccattcatttttatgaaggtctattttagcaacctgtaccttt 29032815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 198
Target Start/End: Complemental strand, 39645344 - 39645316
Alignment:
Q  170 ggaaaagacaaaactgagggataaaattg 198  Q
    |||||||||||||||||||||||||||||    
T  39645344 ggaaaagacaaaactgagggataaaattg 39645316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 151
Target Start/End: Complemental strand, 40929930 - 40929851
Alignment:
Q  71 tggggtttgctacaatagacccacctcttttcatgaaggtccattttagcaagctgcaccttttgcttttggacaaaaaga 151  Q
    ||||||||||||||||||||||||   |||| ||||||||  |||||||||| |  |||||||| | ||||||| ||||||    
T  40929930 tggggtttgctacaatagacccactcatttttatgaaggtttattttagcaaccaacacctttt-catttggacgaaaaga 40929851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 7e-30; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 69 - 155
Target Start/End: Complemental strand, 50432890 - 50432804
Alignment:
Q  69 tatggggtttgctacaatagacccacctcttttcatgaaggtccattttagcaagctgcaccttttgcttttggacaaaaagaccaa 155  Q
    ||||||||||| || ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  50432890 tatggggtttgttataatagacccacatctttttatgaaggtccattttagcaagctgcaccttttgcttttggataaaaagaccaa 50432804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 76 - 155
Target Start/End: Original strand, 50431982 - 50432061
Alignment:
Q  76 tttgctacaatagacccacctcttttcatgaaggtccattttagcaagctgcaccttttgcttttggacaaaaagaccaa 155  Q
    ||||||| |||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  50431982 tttgctaaaatagatccacctctttttatgaaggtccattttagtaagctgcaccttttgcttttggacaaaaagaccaa 50432061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 75 - 134
Target Start/End: Complemental strand, 6311853 - 6311794
Alignment:
Q  75 gtttgctacaatagacccacctcttttcatgaaggtccattttagcaagctgcacctttt 134  Q
    |||||||| |||||||||||||| ||||||||||||| ||||||||||| ||||||||||    
T  6311853 gtttgctataatagacccacctcatttcatgaaggtctattttagcaaggtgcacctttt 6311794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 69 - 139
Target Start/End: Complemental strand, 31908428 - 31908358
Alignment:
Q  69 tatggggtttgctacaatagacccacctcttttcatgaaggtccattttagcaagctgcaccttttgcttt 139  Q
    ||||||||||||||||||||||||||   |||| ||||||||| ||||||||||| |||||||||| ||||    
T  31908428 tatggggtttgctacaatagacccactcatttttatgaaggtctattttagcaagttgcaccttttccttt 31908358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 69 - 134
Target Start/End: Original strand, 6310812 - 6310877
Alignment:
Q  69 tatggggtttgctacaatagacccacctcttttcatgaaggtccattttagcaagctgcacctttt 134  Q
    |||||||||| |||||||||| ||||||| ||||||||||||| ||||||| ||| ||||||||||    
T  6310812 tatggggtttactacaatagatccacctcatttcatgaaggtctattttaggaaggtgcacctttt 6310877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 72 - 134
Target Start/End: Original strand, 12206760 - 12206822
Alignment:
Q  72 ggggtttgctacaatagacccacctcttttcatgaaggtccattttagcaagctgcacctttt 134  Q
    |||||||||||||||||||||||   |||| ||||||||| |||||||||| |||||||||||    
T  12206760 ggggtttgctacaatagacccactcatttttatgaaggtctattttagcaacctgcacctttt 12206822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 76 - 134
Target Start/End: Original strand, 31689177 - 31689235
Alignment:
Q  76 tttgctacaatagacccacctcttttcatgaaggtccattttagcaagctgcacctttt 134  Q
    |||||||||||||||||||   |||||||||||||| |||||||||| |||||||||||    
T  31689177 tttgctacaatagacccactcattttcatgaaggtctattttagcaacctgcacctttt 31689235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 73 - 134
Target Start/End: Complemental strand, 12210989 - 12210928
Alignment:
Q  73 gggtttgctacaatagacccacctcttttcatgaaggtccattttagcaagctgcacctttt 134  Q
    ||||||||||||||||||| ||   |||||||||||||| |||||||||| |||||||||||    
T  12210989 gggtttgctacaatagaccaactcattttcatgaaggtctattttagcaacctgcacctttt 12210928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 69 - 122
Target Start/End: Original strand, 23088269 - 23088322
Alignment:
Q  69 tatggggtttgctacaatagacccacctcttttcatgaaggtccattttagcaa 122  Q
    ||||||||||||||||||||||||||   |||||||||||||| ||||||||||    
T  23088269 tatggggtttgctacaatagacccactcattttcatgaaggtctattttagcaa 23088322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 76 - 134
Target Start/End: Original strand, 42523970 - 42524028
Alignment:
Q  76 tttgctacaatagacccacctcttttcatgaaggtccattttagcaagctgcacctttt 134  Q
    |||||||||||||||||| ||  ||| ||||||||||||||||||| |||| |||||||    
T  42523970 tttgctacaatagacccatcttcttttatgaaggtccattttagcatgctgaacctttt 42524028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 134
Target Start/End: Complemental strand, 12921937 - 12921872
Alignment:
Q  69 tatggggtttgctacaatagacccacctcttttcatgaaggtccattttagcaagctgcacctttt 134  Q
    |||| ||||||||||||||||||||| || ||| ||||||||| |||||||||  | |||||||||    
T  12921937 tatgaggtttgctacaatagacccacttcattttatgaaggtctattttagcatccagcacctttt 12921872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 124
Target Start/End: Original strand, 11791357 - 11791409
Alignment:
Q  72 ggggtttgctacaatagacccacctcttttcatgaaggtccattttagcaagc 124  Q
    ||||||||||||||||||||||| || ||| ||||| ||| ||||||||||||    
T  11791357 ggggtttgctacaatagacccacttcattttatgaatgtctattttagcaagc 11791409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 134
Target Start/End: Original strand, 31914522 - 31914581
Alignment:
Q  75 gtttgctacaatagacccacctcttttcatgaaggtccattttagcaagctgcacctttt 134  Q
    ||||||||||||||||||||   ||||||||||| || |||||||||| | |||||||||    
T  31914522 gtttgctacaatagacccactcattttcatgaagatctattttagcaaccagcacctttt 31914581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 71 - 134
Target Start/End: Complemental strand, 48315258 - 48315195
Alignment:
Q  71 tggggtttgctacaatagacccacctcttttcatgaaggtccattttagcaagctgcacctttt 134  Q
    |||| ||||||||||||||||||| | ||||||| |||||  ||||||||||||  ||||||||    
T  48315258 tgggatttgctacaatagacccacttattttcataaaggtttattttagcaagcaacacctttt 48315195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 73 - 122
Target Start/End: Complemental strand, 23089341 - 23089292
Alignment:
Q  73 gggtttgctacaatagacccacctcttttcatgaaggtccattttagcaa 122  Q
    ||||||||||||||||||||||   |||||||| ||||| ||||||||||    
T  23089341 gggtttgctacaatagacccactcattttcatgtaggtctattttagcaa 23089292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 122
Target Start/End: Original strand, 31135163 - 31135216
Alignment:
Q  69 tatggggtttgctacaatagacccacctcttttcatgaaggtccattttagcaa 122  Q
    ||||| ||||||||||||||||| ||   |||||||||||||| ||||||||||    
T  31135163 tatggagtttgctacaatagaccaactcattttcatgaaggtctattttagcaa 31135216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 121
Target Start/End: Original strand, 20627520 - 20627572
Alignment:
Q  69 tatggggtttgctacaatagacccacctcttttcatgaaggtccattttagca 121  Q
    ||||| ||||||||||||||||||||   |||||||||| ||| |||||||||    
T  20627520 tatggagtttgctacaatagacccactcattttcatgaaagtctattttagca 20627572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 198
Target Start/End: Complemental strand, 50432790 - 50432762
Alignment:
Q  170 ggaaaagacaaaactgagggataaaattg 198  Q
    |||||||||||||||||||||||||||||    
T  50432790 ggaaaagacaaaactgagggataaaattg 50432762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 69 - 139
Target Start/End: Complemental strand, 12441781 - 12441711
Alignment:
Q  69 tatggggtttgctacaatagacccacctcttttcatgaaggtccattttagcaagctgcaccttttgcttt 139  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  12441781 tatgggatttgctacaatagacccacctcttttcatgaaggtccattttagcaagatgcaccttttgcttt 12441711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 69 - 134
Target Start/End: Complemental strand, 29375118 - 29375053
Alignment:
Q  69 tatggggtttgctacaatagacccacctcttttcatgaaggtccattttagcaagctgcacctttt 134  Q
    |||| |||||||||||||||| ||||   ||||||||||||||||||||||||||  |||||||||    
T  29375118 tatgaggtttgctacaatagatccactcattttcatgaaggtccattttagcaaggagcacctttt 29375053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 69 - 153
Target Start/End: Original strand, 10792476 - 10792559
Alignment:
Q  69 tatggggtttgctacaatagacccacctcttttcatgaaggtccattttagcaagctgcaccttttgcttttggacaaaaagacc 153  Q
    |||||||||||||||||||||||||   | ||| ||||||||| ||||||||||||  |||||||| | |||||||| |||||||    
T  10792476 tatggggtttgctacaatagacccattccattttatgaaggtctattttagcaagcaacacctttt-catttggacacaaagacc 10792559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 73 - 122
Target Start/End: Complemental strand, 19237674 - 19237625
Alignment:
Q  73 gggtttgctacaatagacccacctcttttcatgaaggtccattttagcaa 122  Q
    ||||||||||||||||||||||   |||||||||||||| ||||||||||    
T  19237674 gggtttgctacaatagacccactcattttcatgaaggtctattttagcaa 19237625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 63 - 134
Target Start/End: Complemental strand, 7001854 - 7001783
Alignment:
Q  63 tttatctatggggtttgctacaatagacccacctcttttcatgaaggtccattttagcaagctgcacctttt 134  Q
    ||||| ||||| ||||||| |||||||||||| || ||| ||||||||| ||||||||| ||  ||||||||    
T  7001854 tttatatatggagtttgctgcaatagacccacttcattttatgaaggtctattttagcatgcaacacctttt 7001783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 122
Target Start/End: Complemental strand, 8683924 - 8683878
Alignment:
Q  76 tttgctacaatagacccacctcttttcatgaaggtccattttagcaa 122  Q
    |||||||||||||||||||   |||||||||||||| ||||||||||    
T  8683924 tttgctacaatagacccactcattttcatgaaggtctattttagcaa 8683878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 134
Target Start/End: Complemental strand, 10793651 - 10793589
Alignment:
Q  72 ggggtttgctacaatagacccacctcttttcatgaaggtccattttagcaagctgcacctttt 134  Q
    |||||||||||||||||||||||  | ||| || |||||| ||||||||||||  ||||||||    
T  10793651 ggggtttgctacaatagacccactccattttatcaaggtctattttagcaagcaacacctttt 10793589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 122
Target Start/End: Original strand, 5860543 - 5860596
Alignment:
Q  69 tatggggtttgctacaatagacccacctcttttcatgaaggtccattttagcaa 122  Q
    ||||||||||||||||||||||||||   |||| ||||||||  ||||||||||    
T  5860543 tatggggtttgctacaatagacccactcatttttatgaaggtgtattttagcaa 5860596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 139
Target Start/End: Complemental strand, 14600258 - 14600217
Alignment:
Q  98 ttttcatgaaggtccattttagcaagctgcaccttttgcttt 139  Q
    |||| |||||| ||||||||||||| ||||||||||||||||    
T  14600258 tttttatgaagatccattttagcaacctgcaccttttgcttt 14600217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 69 - 141
Target Start/End: Original strand, 23220001 - 23220073
Alignment:
Q  69 tatggggtttgctacaatagacccacctcttttcatgaaggtccattttagcaagctgcaccttttgcttttg 141  Q
    |||||||||||||||||||||||||||  |||| ||||||||| |||||||||||||||||||||| ||||||    
T  23220001 tatggggtttgctacaatagacccacccttttttatgaaggtctattttagcaagctgcacctttttcttttg 23220073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 72 - 149
Target Start/End: Original strand, 42757602 - 42757679
Alignment:
Q  72 ggggtttgctacaatagacccacctcttttcatgaaggtccattttagcaagctgcaccttttgcttttggacaaaaa 149  Q
    |||||||||||||||||||||||   |||| ||||||||  |||||||||||||||||||||||||||| ||||||||    
T  42757602 ggggtttgctacaatagacccactcatttttatgaaggtttattttagcaagctgcaccttttgcttttagacaaaaa 42757679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 69 - 139
Target Start/End: Original strand, 12836691 - 12836761
Alignment:
Q  69 tatggggtttgctacaatagacccacctcttttcatgaaggtccattttagcaagctgcaccttttgcttt 139  Q
    |||| ||||||||||||||||||||| | |||||||||||||| ||||||||||| |||||||||| ||||    
T  12836691 tatgaggtttgctacaatagacccacattttttcatgaaggtctattttagcaaggtgcaccttttacttt 12836761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 69 - 139
Target Start/End: Original strand, 18573507 - 18573577
Alignment:
Q  69 tatggggtttgctacaatagacccacctcttttcatgaaggtccattttagcaagctgcaccttttgcttt 139  Q
    |||||||||||||||||||||||||||  ||| |||||||||| ||||||||||| |||||||||| ||||    
T  18573507 tatggggtttgctacaatagacccaccattttacatgaaggtctattttagcaagatgcacctttttcttt 18573577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 73 - 134
Target Start/End: Complemental strand, 16106095 - 16106034
Alignment:
Q  73 gggtttgctacaatagacccacctcttttcatgaaggtccattttagcaagctgcacctttt 134  Q
    ||||||||||||||||||||||   |||||||||||||| |||||||||| |||||||||||    
T  16106095 gggtttgctacaatagacccactcattttcatgaaggtctattttagcaacctgcacctttt 16106034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 73 - 134
Target Start/End: Complemental strand, 16113335 - 16113274
Alignment:
Q  73 gggtttgctacaatagacccacctcttttcatgaaggtccattttagcaagctgcacctttt 134  Q
    ||||||||||||||||||||||   |||||||||||||| |||||||||| |||||||||||    
T  16113335 gggtttgctacaatagacccactcattttcatgaaggtctattttagcaacctgcacctttt 16113274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 76 - 141
Target Start/End: Complemental strand, 23220946 - 23220881
Alignment:
Q  76 tttgctacaatagacccacctcttttcatgaaggtccattttagcaagctgcaccttttgcttttg 141  Q
    ||||||||||||||||| ||  |||| ||||||||| |||||||||||||||||||||| ||||||    
T  23220946 tttgctacaatagaccctcccttttttatgaaggtctattttagcaagctgcacctttttcttttg 23220881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 69 - 123
Target Start/End: Complemental strand, 1274182 - 1274128
Alignment:
Q  69 tatggggtttgctacaatagacccacctcttttcatgaaggtccattttagcaag 123  Q
    ||||||||||||||||||||||| || | |||||||||||||| |||||||||||    
T  1274182 tatggggtttgctacaatagaccaacttattttcatgaaggtctattttagcaag 1274128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 72 - 134
Target Start/End: Original strand, 16101519 - 16101581
Alignment:
Q  72 ggggtttgctacaatagacccacctcttttcatgaaggtccattttagcaagctgcacctttt 134  Q
    ||||||||||||||||||| |||   |||||||||||||| |||||||||| |||||||||||    
T  16101519 ggggtttgctacaatagacacactcattttcatgaaggtctattttagcaacctgcacctttt 16101581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 151
Target Start/End: Complemental strand, 5152528 - 5152447
Alignment:
Q  69 tatggggtttgctacaatagacccacctcttttcatgaaggtccattttagcaagctgcaccttttgcttttggacaaaaaga 151  Q
    |||| ||||||||||||||||||| |   |||| ||||||||| |||||||||||  ||||||||| | ||||||| ||||||    
T  5152528 tatgaggtttgctacaatagacccgctcatttttatgaaggtctattttagcaagtggcacctttt-catttggaccaaaaga 5152447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 122
Target Start/End: Original strand, 30971285 - 30971331
Alignment:
Q  76 tttgctacaatagacccacctcttttcatgaaggtccattttagcaa 122  Q
    |||||||||||||||||||   |||||||||||||| ||||||||||    
T  30971285 tttgctacaatagacccactcattttcatgaaggtctattttagcaa 30971331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 122
Target Start/End: Complemental strand, 30972078 - 30972028
Alignment:
Q  72 ggggtttgctacaatagacccacctcttttcatgaaggtccattttagcaa 122  Q
    |||||||||||||||||||||||    ||||||||||||| ||||||||||    
T  30972078 ggggtttgctacaatagacccactcaatttcatgaaggtctattttagcaa 30972028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 134
Target Start/End: Original strand, 44499467 - 44499525
Alignment:
Q  76 tttgctacaatagacccacctcttttcatgaaggtccattttagcaagctgcacctttt 134  Q
    |||||||||||||| ||||||   ||  |||||||||||||||||| ||||||||||||    
T  44499467 tttgctacaatagatccaccttaatttgtgaaggtccattttagcatgctgcacctttt 44499525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 15 - 71
Target Start/End: Complemental strand, 33984571 - 33984515
Alignment:
Q  15 tcagtatgggacttatctgtttgcatcttaatggacttagtagtgacttttatctat 71  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  33984571 tcagtatgggacttatctgtttgcatcttaatggactttgtagtgacttttatctat 33984515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 69 - 134
Target Start/End: Original strand, 42026889 - 42026954
Alignment:
Q  69 tatggggtttgctacaatagacccacctcttttcatgaaggtccattttagcaagctgcacctttt 134  Q
    ||||||||||||||||||||||||||   |||||||||||||| |||||||||| |||||||||||    
T  42026889 tatggggtttgctacaatagacccactcattttcatgaaggtctattttagcaacctgcacctttt 42026954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 72 - 134
Target Start/End: Complemental strand, 42031765 - 42031703
Alignment:
Q  72 ggggtttgctacaatagacccacctcttttcatgaaggtccattttagcaagctgcacctttt 134  Q
    |||||||||||||||||||||||   |||||||||||||| |||||||||| |||||||||||    
T  42031765 ggggtttgctacaatagacccactcattttcatgaaggtctattttagcaacctgcacctttt 42031703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 62 - 134
Target Start/End: Complemental strand, 17239488 - 17239416
Alignment:
Q  62 ttttatctatggggtttgctacaatagacccacctcttttcatgaaggtccattttagcaagctgcacctttt 134  Q
    |||||| ||||||||||||||||||||||||||   |||| ||||||||| |||||||||||  |||||||||    
T  17239488 ttttatatatggggtttgctacaatagacccactcatttttatgaaggtctattttagcaagtagcacctttt 17239416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 72 - 134
Target Start/End: Original strand, 16801969 - 16802031
Alignment:
Q  72 ggggtttgctacaatagacccacctcttttcatgaaggtccattttagcaagctgcacctttt 134  Q
    |||||||||||||||||||||||   |||||||||||||| |||||||||||  |||||||||    
T  16801969 ggggtttgctacaatagacccactcattttcatgaaggtctattttagcaaggggcacctttt 16802031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 72 - 153
Target Start/End: Original strand, 17238593 - 17238673
Alignment:
Q  72 ggggtttgctacaatagacccacctcttttcatgaaggtccattttagcaagctgcaccttttgcttttggacaaaaagacc 153  Q
    |||||||||||||||||||||||   |||| ||||||||| |||||||||||  ||||||||| | ||||||| ||||||||    
T  17238593 ggggtttgctacaatagacccactcatttttatgaaggtctattttagcaagtagcacctttt-cgtttggaccaaaagacc 17238673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 72 - 134
Target Start/End: Complemental strand, 48572881 - 48572819
Alignment:
Q  72 ggggtttgctacaatagacccacctcttttcatgaaggtccattttagcaagctgcacctttt 134  Q
    ||||||||||||||||||||||||||||||  | |||||| |||||||||   ||||||||||    
T  48572881 ggggtttgctacaatagacccacctctttttgttaaggtctattttagcatcatgcacctttt 48572819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 134
Target Start/End: Original strand, 34267969 - 34268034
Alignment:
Q  69 tatggggtttgctacaatagacccacctcttttcatgaaggtccattttagcaagctgcacctttt 134  Q
    ||||||||||||||||||||||||||  | ||| || |||||| ||||||||||||  ||||||||    
T  34267969 tatggggtttgctacaatagacccactccattttatcaaggtctattttagcaagcaacacctttt 34268034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 153
Target Start/End: Complemental strand, 34269156 - 34269076
Alignment:
Q  72 ggggtttgctacaatagacccacctcttttcatgaaggtccattttagcaagctgcaccttttgcttttggacaaaaagacc 153  Q
    ||||||||||||||||||||||   | ||| ||||||||| ||||||||||||  |||||||| | |||||||| |||||||    
T  34269156 ggggtttgctacaatagacccattccattttatgaaggtctattttagcaagcaacacctttt-catttggacacaaagacc 34269076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 153
Target Start/End: Complemental strand, 34275391 - 34275311
Alignment:
Q  72 ggggtttgctacaatagacccacctcttttcatgaaggtccattttagcaagctgcaccttttgcttttggacaaaaagacc 153  Q
    ||||||||||||||||||||||   | ||| ||||||||| ||||||||||||  |||||||| | |||||||| |||||||    
T  34275391 ggggtttgctacaatagacccattccattttatgaaggtctattttagcaagcaacacctttt-catttggacacaaagacc 34275311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 200 - 232
Target Start/End: Complemental strand, 33984513 - 33984481
Alignment:
Q  200 tattaagcgagtgacatatttaattataacaaa 232  Q
    |||||||||||||||||||||||||||||||||    
T  33984513 tattaagcgagtgacatatttaattataacaaa 33984481  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 124
Target Start/End: Complemental strand, 24790918 - 24790870
Alignment:
Q  76 tttgctacaatagacccacctcttttcatgaaggtccattttagcaagc 124  Q
    ||||||||||||||||||| || ||| ||||||||| ||||||| ||||    
T  24790918 tttgctacaatagacccacttcattttatgaaggtctattttagaaagc 24790870  T

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Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 69 - 139
Target Start/End: Complemental strand, 39240929 - 39240859
Alignment:
Q  69 tatggggtttgctacaatagacccacctcttttcatgaaggtccattttagcaagctgcaccttttgcttt 139  Q
    |||||||||||||||||||||||||||  |||||||||||||| ||||||||||| |||||||||| ||||    
T  39240929 tatggggtttgctacaatagacccacccattttcatgaaggtctattttagcaagatgcacctttttcttt 39240859  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 71 - 153
Target Start/End: Complemental strand, 32667457 - 32667375
Alignment:
Q  71 tggggtttgctacaatagacccacctcttttcatgaaggtccattttagcaagctgcaccttttgcttttggacaaaaagacc 153  Q
    |||||||||||||||||||||||||  ||||| |||||||| ||||||||||   ||| ||||| | ||||||||||||||||    
T  32667457 tggggtttgctacaatagacccaccctttttcttgaaggtctattttagcaaaaagcagcttttccatttggacaaaaagacc 32667375  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 72 - 133
Target Start/End: Complemental strand, 45631211 - 45631150
Alignment:
Q  72 ggggtttgctacaatagacccacctcttttcatgaaggtccattttagcaagctgcaccttt 133  Q
    |||||||| |||||||||||||| || ||| ||||||||| ||||||||||||| |||||||    
T  45631211 ggggtttgttacaatagacccacttcattttatgaaggtctattttagcaagctacaccttt 45631150  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 69 - 121
Target Start/End: Original strand, 9243987 - 9244039
Alignment:
Q  69 tatggggtttgctacaatagacccacctcttttcatgaaggtccattttagca 121  Q
    |||||||||||||||||||||||||| || ||| ||||||||| |||||||||    
T  9243987 tatggggtttgctacaatagacccacttcattttatgaaggtctattttagca 9244039  T

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Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 73 - 139
Target Start/End: Original strand, 30667861 - 30667927
Alignment:
Q  73 gggtttgctacaatagacccacctcttttcatgaaggtccattttagcaagctgcaccttttgcttt 139  Q
    |||||||||||||||||||||||| |||||||||||||  ||||||||||| |||||||||| ||||    
T  30667861 gggtttgctacaatagacccaccttttttcatgaaggtatattttagcaaggtgcaccttttacttt 30667927  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 69 - 121
Target Start/End: Original strand, 31240001 - 31240053
Alignment:
Q  69 tatggggtttgctacaatagacccacctcttttcatgaaggtccattttagca 121  Q
    ||||||||||||||||||||| |||||||||||  | ||||||||||||||||    
T  31240001 tatggggtttgctacaatagatccacctctttttgttaaggtccattttagca 31240053  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 69 - 153
Target Start/End: Original strand, 33471158 - 33471241
Alignment:
Q  69 tatggggtttgctacaatagacccacctcttttcatgaaggtccattttagcaagctgcaccttttgcttttggacaaaaagacc 153  Q
    |||||||||||||||||||||||||    |||||||||||||| |||||||||| |  |||||||| | |||||||| |||||||    
T  33471158 tatggggtttgctacaatagacccattcattttcatgaaggtctattttagcaaccaacacctttt-catttggacacaaagacc 33471241  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 76 - 155
Target Start/End: Complemental strand, 33471921 - 33471843
Alignment:
Q  76 tttgctacaatagacccacctcttttcatgaaggtccattttagcaagctgcaccttttgcttttggacaaaaagaccaa 155  Q
    ||||||||||||||||||| || ||| ||||||||| ||||||||||   ||||||||| | ||||||| ||||||||||    
T  33471921 tttgctacaatagacccacttcattttatgaaggtctattttagcaactagcacctttt-catttggactaaaagaccaa 33471843  T

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Target: scaffold0112 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 76 - 139
Target Start/End: Original strand, 35003 - 35066
Alignment:
Q  76 tttgctacaatagacccacctcttttcatgaaggtccattttagcaagctgcaccttttgcttt 139  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||| | |||||||||| ||||    
T  35003 tttgctacaatagacccaccttttttcatgaaggtctattttagcatgatgcaccttttacttt 35066  T

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Target: scaffold0112; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 72 - 139
Target Start/End: Complemental strand, 35865 - 35798
Alignment:
Q  72 ggggtttgctacaatagacccacctcttttcatgaaggtccattttagcaagctgcaccttttgcttt 139  Q
    ||||||||||||||||||||| ||| |||||||||||||| ||||||||| | || ||||||| ||||    
T  35865 ggggtttgctacaatagacccgccttttttcatgaaggtctattttagcatgatgtaccttttacttt 35798  T

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Target: scaffold0015 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 73 - 134
Target Start/End: Original strand, 45330 - 45391
Alignment:
Q  73 gggtttgctacaatagacccacctcttttcatgaaggtccattttagcaagctgcacctttt 134  Q
    ||||||||||||||||||||||   |||||||||||||| ||||||||||| ||||||||||    
T  45330 gggtttgctacaatagacccactcattttcatgaaggtctattttagcaagatgcacctttt 45391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 69 - 118
Target Start/End: Original strand, 162456 - 162505
Alignment:
Q  69 tatggggtttgctacaatagacccacctcttttcatgaaggtccatttta 118  Q
    |||||||||||||||||||||||||||||||||  |||||||||||||||    
T  162456 tatggggtttgctacaatagacccacctctttttgtgaaggtccatttta 162505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 69 - 119
Target Start/End: Complemental strand, 162941 - 162891
Alignment:
Q  69 tatggggtttgctacaatagacccacctcttttcatgaaggtccattttag 119  Q
    |||||| ||||||||||||||||||||||||||  ||||||||||||||||    
T  162941 tatgggttttgctacaatagacccacctctttttgtgaaggtccattttag 162891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 72 - 139
Target Start/End: Original strand, 38887327 - 38887394
Alignment:
Q  72 ggggtttgctacaatagacccacctcttttcatgaaggtccattttagcaagctgcaccttttgcttt 139  Q
    ||||||||||||||||||| |||   |||||||||||||| ||||||||||| |||||||||| ||||    
T  38887327 ggggtttgctacaatagactcactcattttcatgaaggtctattttagcaaggtgcaccttttacttt 38887394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 72 - 134
Target Start/End: Complemental strand, 5997683 - 5997621
Alignment:
Q  72 ggggtttgctacaatagacccacctcttttcatgaaggtccattttagcaagctgcacctttt 134  Q
    |||||||||||||||||||||||   |||||||||||||| |||||||||| | |||||||||    
T  5997683 ggggtttgctacaatagacccactcattttcatgaaggtctattttagcaaccagcacctttt 5997621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 69 - 139
Target Start/End: Complemental strand, 47552574 - 47552504
Alignment:
Q  69 tatggggtttgctacaatagacccacctcttttcatgaaggtccattttagcaagctgcaccttttgcttt 139  Q
    |||| ||||||||||||||||||||||  ||||||||||| || ||||||||| | |||||||||| ||||    
T  47552574 tatgaggtttgctacaatagacccaccctttttcatgaagatctattttagcatgatgcaccttttacttt 47552504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 69 - 122
Target Start/End: Original strand, 5995246 - 5995299
Alignment:
Q  69 tatggggtttgctacaatagacccacctcttttcatgaaggtccattttagcaa 122  Q
    ||||||||||||||||||||||||||   |||||||||||||| ||||||||||    
T  5995246 tatggggtttgctacaatagacccactcattttcatgaaggtctattttagcaa 5995299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 74 - 131
Target Start/End: Original strand, 27875931 - 27875988
Alignment:
Q  74 ggtttgctacaatagacccacctcttttcatgaaggtccattttagcaagctgcacct 131  Q
    |||||||||||||||| || ||| |||||||||||||| ||||||||||| |||||||    
T  27875931 ggtttgctacaatagatccgccttttttcatgaaggtctattttagcaaggtgcacct 27875988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 153
Target Start/End: Original strand, 45550994 - 45551074
Alignment:
Q  72 ggggtttgctacaatagacccacctcttttcatgaaggtccattttagcaagctgcaccttttgcttttggacaaaaagacc 153  Q
    |||||||||||||||||||||||    ||||||||||||| |||||||||| |  |||||||| | ||| ||||||||||||    
T  45550994 ggggtttgctacaatagacccactcaatttcatgaaggtctattttagcaaccaacacctttt-cattttgacaaaaagacc 45551074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 122
Target Start/End: Original strand, 41970882 - 41970934
Alignment:
Q  70 atggggtttgctacaatagacccacctcttttcatgaaggtccattttagcaa 122  Q
    |||||||||||||||||||||||||   ||||||||||| || ||||||||||    
T  41970882 atggggtttgctacaatagacccactcattttcatgaagatctattttagcaa 41970934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 124
Target Start/End: Original strand, 43744560 - 43744612
Alignment:
Q  72 ggggtttgctacaatagacccacctcttttcatgaaggtccattttagcaagc 124  Q
    ||||||||||||||||||||||| || |||  ||||| |||||||||||||||    
T  43744560 ggggtttgctacaatagacccacttcattttgtgaagatccattttagcaagc 43744612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 153
Target Start/End: Complemental strand, 45551880 - 45551797
Alignment:
Q  69 tatggggtttgctacaatagacccacctcttttcatgaaggtccattttagcaagctgcaccttttgcttttggacaaaaagacc 153  Q
    |||| |||||||||||||||||||||    ||||||||||||| |||||||||| |  |||||||| | ||| ||||||||||||    
T  45551880 tatgaggtttgctacaatagacccactcaatttcatgaaggtctattttagcaaccaacacctttt-cattttgacaaaaagacc 45551797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 134
Target Start/End: Original strand, 1409380 - 1409434
Alignment:
Q  80 ctacaatagacccacctcttttcatgaaggtccattttagcaagctgcacctttt 134  Q
    |||||||||||||||   |||| ||||||||| ||||||||||| ||||||||||    
T  1409380 ctacaatagacccactcatttttatgaaggtctattttagcaaggtgcacctttt 1409434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0676 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0676
Description:

Target: scaffold0676; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 134
Target Start/End: Original strand, 3168 - 3220
Alignment:
Q  82 acaatagacccacctcttttcatgaaggtccattttagcaagctgcacctttt 134  Q
    ||||||||||| |   |||||||||||||| ||||||||||| ||||||||||    
T  3168 acaatagacccgctcattttcatgaaggtctattttagcaagatgcacctttt 3220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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