View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16906_low_3 (Length: 431)
Name: NF16906_low_3
Description: NF16906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16906_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-103; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 9 - 243
Target Start/End: Complemental strand, 733049 - 732804
Alignment:
| Q |
9 |
gaaaaatatctaaactcccagtctgatgcatcctgttgacgatgtctttcccatagtacacacgtacga---------caatcgtcattcagatatatct |
99 |
Q |
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| T |
733049 |
gaaaaatatctaaactcccagtctgatgcatcctgttgacgatgtctttcccatagtacacacgtaggaggtattggacaatcgtcattcagatatatct |
732950 |
T |
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| Q |
100 |
gtacgtaatataaaggtat--gattgttacacacaagcaacgacaacactaaatacaaattaaaaatcagatataagtttagctgcatgaaatgattgtt |
197 |
Q |
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| T |
732949 |
gtacgtaatataaacgtatatgattgttacacacaagcaacgacaacactaaatacaaattaaaaatcagatataagtttagctgcatgaaatgattgtt |
732850 |
T |
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| Q |
198 |
gttcacatatccaaggcacatgagtcgattaatgctttctgttggt |
243 |
Q |
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| T |
732849 |
gttcacatatccaaggcacatgagtcgattaatgctttctgctggt |
732804 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 247 - 307
Target Start/End: Complemental strand, 4109328 - 4109268
Alignment:
| Q |
247 |
cacaatgaccatcaccagcgatatcaatgacttcttcaataaattgatgcatgaacagagg |
307 |
Q |
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| T |
4109328 |
cacaatgaccatcaccttcgacaccaacgacattttgaataaattgatgcatgaacagagg |
4109268 |
T |
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