View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16906_low_6 (Length: 377)
Name: NF16906_low_6
Description: NF16906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16906_low_6 |
 | |
|
| [»] scaffold0360 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0360 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: scaffold0360
Description:
Target: scaffold0360; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 12 - 360
Target Start/End: Complemental strand, 16152 - 15812
Alignment:
| Q |
12 |
atgaataatatgtagagggaattccaaagcacaaacgaaaatttagtgcatgattgtctgtcttatttcattttaaatgatgaacaaacttacaagcaat |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16152 |
atgaataatatgtagagggaattccaaagcacaaacgaaaatttagtgcatgattgtct----tatttcattttaaatgatgaacaaacttacaagcaat |
16057 |
T |
|
| Q |
112 |
ttcccttgatatatactaaaaccattgtcatattagcgtcaattataaagttgcaccattttttcttgctttgaaagggatagttggtagttaaagttct |
211 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16056 |
ttcctttgatatatactaaaaccattgtcatattaacgtcaattataaagttgcaccattttttcttgctttgaaagggatagttggtagttaaagttct |
15957 |
T |
|
| Q |
212 |
aatcgaaagaagaagatnnnnnnnngttgctagtttatgttctccagggcatgacgtaagtatttgaaagggatagttgctagttaaagttcgaatagat |
311 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15956 |
aatcgaaagaagaagataaaaaaaagttgctag---atgttctccagggcat-acgtaagtatttgaaagggatagttgctagttaaagttcgaatagat |
15861 |
T |
|
| Q |
312 |
agaagaagagagaaaaaagttgctaatttatgttctcgaaggcatacgt |
360 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
15860 |
agaagaagagagaaaaaagttgctagtttatgttctcgaaggcatacgt |
15812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 196; Significance: 1e-106; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 12 - 360
Target Start/End: Complemental strand, 5861896 - 5861552
Alignment:
| Q |
12 |
atgaataatatgtagagggaattccaaagcacaaacgaaaatttagtgcatgattgtctgtcttatttcattttaaatgatgaacaaacttacaagcaat |
111 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5861896 |
atgaataatatgtagagggaattctaaagcacaaacgaaaatttagtccatgattgtat----tatttcattttaaatgatgaacaaacttacaagcaat |
5861801 |
T |
|
| Q |
112 |
ttcccttgatatatactaaaaccattgtcatattagcgtcaattataaagttgcaccattttttcttgctttgaaagggatagttggtagttaaagttct |
211 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
5861800 |
ttcccttgatata--ctaaaaccattgtcatattaacgtcaattataaagttgcaccattttttcttgttttgaaagggatagttggtagttaaagttct |
5861703 |
T |
|
| Q |
212 |
aatcgaaagaagaagat-nnnnnnnngttgctagtttatgttctccagggcatgacgtaagtatttgaaagggatagttgctagttaaagttcgaataga |
310 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||||| ||| | |
|
|
| T |
5861702 |
aatcgaaagaagaagataaaaaaaaagttgctagtttatgttctccagggcat-acgtaagtacttgaaagggatagttgcaggttaaagttcaaatcaa |
5861604 |
T |
|
| Q |
311 |
tagaagaag-agagaaaaaag-ttgctaatttatgttctcgaaggcatacgt |
360 |
Q |
| |
|
|||||||| ||| |||| | |||||| |||||||| || ||||||||||| |
|
|
| T |
5861603 |
aagaagaagaagaataaaatgtttgctagtttatgttttctaaggcatacgt |
5861552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 37 - 227
Target Start/End: Original strand, 5891579 - 5891765
Alignment:
| Q |
37 |
aaagcacaaacgaaaatttagtgcatgattgtctgtcttatttcattttaaa-tgatgaacaaacttacaa-gcaattt-cccttgatatatactaaaac |
133 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||| ||| |||| ||||||||||||| |||| || |||||||||| |||||||| |
|
|
| T |
5891579 |
aaagcacaaacgaaaatttagtgcatgattgtct----tatttcatttaaaaatgattaacaaacttacaaagcaaattgcccttgatat--actaaaac |
5891672 |
T |
|
| Q |
134 |
cattgtcatattagcgtcaattataaagttgcaccattttttcttgctttgaaagggatagttggtagttaaagttctaatcgaaagaagaaga |
227 |
Q |
| |
|
||||||||||||| ||||||||||||||||| | || |||| | | ||||||||||||||| |||||||||||| |||||||||||||||| |
|
|
| T |
5891673 |
cattgtcatattaacgtcaattataaagttg-tcgatctttttattttctgaaagggatagttgctagttaaagttcaaatcgaaagaagaaga |
5891765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 238 - 360
Target Start/End: Complemental strand, 5861581 - 5861458
Alignment:
| Q |
238 |
ttgctagtttatgttctccagggcatgacgtaagtatttgaaagggatagttgctagttaaagttcgaatagatagaagaagagagaa--aaaagttgct |
335 |
Q |
| |
|
||||||||||||||| || | ||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
5861581 |
ttgctagtttatgttttctaaggcat-acgtcggtatttgaaagggatagttgctagttaaagttcgattagatagaagaagagagaaaaaaaagttgct |
5861483 |
T |
|
| Q |
336 |
aatttatgttctcgaaggcatacgt |
360 |
Q |
| |
|
| ||||||||||| ||||||||||| |
|
|
| T |
5861482 |
agtttatgttctccaaggcatacgt |
5861458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 276 - 360
Target Start/End: Original strand, 5891721 - 5891804
Alignment:
| Q |
276 |
tgaaagggatagttgctagttaaagttcgaatagatagaagaagagagaaaaaagttgctaatttatgttctcgaaggcatacgt |
360 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| || |||||||||| |||||||||||| |||||||||| | ||||||||| |
|
|
| T |
5891721 |
tgaaagggatagttgctagttaaagttcaaatcgaaagaagaagaggaaaaaaagttgct-ggttatgttctctagggcatacgt |
5891804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University