View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16906_low_7 (Length: 362)
Name: NF16906_low_7
Description: NF16906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16906_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 285; Significance: 1e-160; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 3 - 326
Target Start/End: Complemental strand, 33882122 - 33881799
Alignment:
| Q |
3 |
taagcgttctagagttggtttgaacttctcagctctgtctttcattttaataactgaattcaatagttcctcaattactataccaacaacagcatcaacc |
102 |
Q |
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| T |
33882122 |
taagcgttctagagttggtttgaacttcacagctctgtctttcatttcaataactgaattcaatagttcctcaattactataccaacaacagcatcaacc |
33882023 |
T |
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| Q |
103 |
atagtgatgacctgctaagaacaataaaaccaaagaaactcaaaattaaaagtcaaaaacttttgatctaaggaagttcaatgaaagtcaaacaacaag- |
201 |
Q |
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| T |
33882022 |
atagtgatgacctgctaagaacaataaaaccaaagaaactcaaaattaaaagtcaaaagc-tttgatctaaggaagttcaatgaaagtcaaacaacaagt |
33881924 |
T |
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| Q |
202 |
tttttgttctcactgagatgtttgataattgagaataccttggcttttgtatttatttatgtacaatttttgtttgacgagttctttgatatttggatag |
301 |
Q |
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| T |
33881923 |
tttttgttctcactgagatgtttgataattgagaataccttggcttttgtatttatttatgtacaatttttgtttaccgagttctttgatatttggacag |
33881824 |
T |
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| Q |
302 |
ctaatttacaatttagtattgttgt |
326 |
Q |
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| T |
33881823 |
ctaatttacaatttagtattgttgt |
33881799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 10 - 194
Target Start/End: Complemental strand, 33866296 - 33866111
Alignment:
| Q |
10 |
tctagagttggtttgaacttctcagctctgtctttcattttaataactgaattcaatagttcctcaattactataccaacaacagcatc---aaccatag |
106 |
Q |
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| T |
33866296 |
tctagagttggtttgaacttcaaagctttgttcttcatgtcaacaactgaactcattagttcttcaactaatttcccaacaacagcatctagaaccatag |
33866197 |
T |
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| Q |
107 |
tgatgacctgctaagaacaataaaaccaaagaaactcaaaattaaaagtcaaaaac-ttttgatctaaggaagttcaatgaaagtcaaa |
194 |
Q |
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| T |
33866196 |
ccatgatctaccaagaacaaataaaacaaaaaa---caaaattaatagacaaaaaaattttgatctaaggaaggtcaatgaaagtcaaa |
33866111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 299
Target Start/End: Complemental strand, 33865980 - 33865909
Alignment:
| Q |
226 |
ataattgagaataccttggcttttgtatttatttatgtacaatttttgtttgacgagttctttgatatttggat |
299 |
Q |
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| T |
33865980 |
ataattgagaatatcttggattttgtatttattta--aataatctttatttgacgaaatctttgatatttggat |
33865909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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