View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16907_low_1 (Length: 497)
Name: NF16907_low_1
Description: NF16907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16907_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 1 - 482
Target Start/End: Complemental strand, 41812032 - 41811551
Alignment:
| Q |
1 |
gttggaattggtatcgtgatattgatttggaatttggtagtgtactccttctcaatattttattcgattaaataactttaacaatcatttatttcaatta |
100 |
Q |
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| T |
41812032 |
gttgaaattggtatggtgatattgatttggaatttggcagtgtattccttctcaatatctcattcgattaaataactttagcaatcatttatttcaatta |
41811933 |
T |
|
| Q |
101 |
aataggttgttcctcaatagataaaattggagatacattttttacatcctataagtattttatgtttcgtcaaattacaaaaatattttgaaattggatg |
200 |
Q |
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| T |
41811932 |
aataggttgtttctcaatagataaaattggagatacactgtttacattctataagtattttatgtttcgtcaaattacaaagatattttgaaattggatg |
41811833 |
T |
|
| Q |
201 |
tatgatatggttgattgatggttttttattggaagataatgtaaaattattttatattatctatctatgcccatcaaactcttctcattaactcaattcc |
300 |
Q |
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| T |
41811832 |
tatgatatggttgattgatggttttttattggaagataatgtaaaattattttatattatctatgtatgcccatcaaactcttctcattaactcaattcc |
41811733 |
T |
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| Q |
301 |
tgacaaatttggaatatcaaatatcattggtaaaaaattaccactggaatggttagtttcatcgagggtacttcaaaccactcaaacttatagtgatttc |
400 |
Q |
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| T |
41811732 |
tgacaaatttgcaatatcaaatatcattggtaaaaaattaccattggaatggttagtttcatcgagggtacttcaaaccactcaaacttatagtgatttc |
41811633 |
T |
|
| Q |
401 |
ttgtagtaaaatgatttggatctccacatgcttgaatcaaatatgaaatagttctgttgatcaactcaccaataaaatttat |
482 |
Q |
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| T |
41811632 |
ttgtagtaaaatgatttggatctccacatgcttgaatcaaatatgaaatagttctgttgatcatctcaccaataaaatttat |
41811551 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 183 - 246
Target Start/End: Complemental strand, 30073567 - 30073504
Alignment:
| Q |
183 |
atattttgaaattggatgtatgatatggttgattgatggttttttattggaagataatgtaaaa |
246 |
Q |
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| T |
30073567 |
atattttgaaattagttgtatgatatggtagattgatggttttttattggatgacagtgtaaaa |
30073504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 168 - 248
Target Start/End: Complemental strand, 6887371 - 6887291
Alignment:
| Q |
168 |
cgtcaaattacaaaaatattttgaaattggatgtatgatatggttgattgatggttttttattggaagataatgtaaaatt |
248 |
Q |
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| T |
6887371 |
cgtcaaaccacaaaaatattttaaaattggttgtatgacatgagaaattgatgattttttattggatgacaatgtaaaatt |
6887291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 254
Target Start/End: Original strand, 3736655 - 3736708
Alignment:
| Q |
201 |
tatgatatggttgattgatggttttttattggaagataatgtaaaattatttta |
254 |
Q |
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| T |
3736655 |
tatgatatgatagattgatggtttcttattggacgacagtgtaaaattatttta |
3736708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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