View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16907_low_3 (Length: 327)
Name: NF16907_low_3
Description: NF16907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16907_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 13 - 310
Target Start/End: Original strand, 1623781 - 1624078
Alignment:
| Q |
13 |
catcaatgcctaaatttaaaagattcaagagaaatatgtaaaaattagaaactataaataacattctaaactctaaagtgttcgtgctagacaagttgca |
112 |
Q |
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| T |
1623781 |
catcaatgcctgaatttaaaagattcaagagaaatatgtaaaaattagaaactataaataacattctaaactctaaagtgttcgtgttagacaagttgca |
1623880 |
T |
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| Q |
113 |
agaaagccattagacacttatgaatatcatatatagctatgatataaagagcacatttccgtgacatctaattttcaacactgatttactattgaatttt |
212 |
Q |
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|||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
1623881 |
agaaagccattagagaattatgaatatcatatatagctatgatataaagagcacatttccatgacatctaattttcaacactgatttactattgaatttt |
1623980 |
T |
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| Q |
213 |
agggctttaaaactagaaaaaactaaatagggcttttcagcactgatttacacaaagatacatgtagattgattttatttttccagtctctatctttc |
310 |
Q |
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| T |
1623981 |
agggctttaaaactagaaaaaactaaatagggcttttcaacactgatttacacaaagatacatgtagattgattttatttttccagtctctatctttc |
1624078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 13 - 224
Target Start/End: Original strand, 1606659 - 1606873
Alignment:
| Q |
13 |
catcaatgcctaaatttaaaagattcaagagaaatatgtaaaaa-ttagaaactataaataacattctaaactcta--aagtgttcgtgctagacaagtt |
109 |
Q |
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| T |
1606659 |
catcaatacctaaatttaaatgatccaagagaaatatgtaaaaaattagaaactataaataacaatctaaactctataaagtgttcgtgctacataagtt |
1606758 |
T |
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| Q |
110 |
gcaagaaagccattagacacttatgaatatcatatatagctatgatataaagagcacatttccgtgacatctaattttcaacactgatttactattgaat |
209 |
Q |
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| T |
1606759 |
gcaagaaagccattagaccagtatgaatatcatatatacctatgatataaagagcacatttccgtgacaactagttttaaacactgatttagtattgaat |
1606858 |
T |
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| Q |
210 |
tttagggctttaaaa |
224 |
Q |
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| T |
1606859 |
tttagggctttaaaa |
1606873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 13 - 101
Target Start/End: Original strand, 18781475 - 18781563
Alignment:
| Q |
13 |
catcaatgcctaaatttaaaagattcaagagaaatatgtaaaaattagaaactataaataacattctaaactctaaagtgttcgtgcta |
101 |
Q |
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| T |
18781475 |
catcaatgcctgaatttaaaagattcaagagaaatatgtaaaaattagaaactataaataacaatctaaactctaaagtgtccgtgcta |
18781563 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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