View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16907_low_4 (Length: 274)

Name: NF16907_low_4
Description: NF16907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16907_low_4
NF16907_low_4
[»] chr4 (28 HSPs)
chr4 (19-239)||(4609133-4609353)
chr4 (106-241)||(42398525-42398660)
chr4 (87-221)||(24637740-24637877)
chr4 (87-146)||(26510422-26510481)
chr4 (104-150)||(54983110-54983156)
chr4 (87-151)||(47044459-47044523)
chr4 (171-227)||(54983205-54983261)
chr4 (94-137)||(32006976-32007019)
chr4 (117-227)||(28808419-28808528)
chr4 (87-137)||(34409967-34410017)
chr4 (87-137)||(53451069-53451119)
chr4 (59-175)||(19545388-19545504)
chr4 (87-146)||(34035706-34035765)
chr4 (22-136)||(2011908-2012022)
chr4 (95-137)||(50561448-50561490)
chr4 (94-146)||(34659085-34659137)
chr4 (94-145)||(10727236-10727287)
chr4 (94-145)||(10941005-10941056)
chr4 (87-146)||(43317444-43317503)
chr4 (87-137)||(23019573-23019623)
chr4 (87-137)||(31135077-31135127)
chr4 (87-145)||(37143508-37143566)
chr4 (87-137)||(40314812-40314862)
chr4 (87-137)||(40324888-40324938)
chr4 (171-227)||(18362865-18362920)
chr4 (178-226)||(19545518-19545566)
chr4 (94-146)||(34334770-34334822)
chr4 (171-227)||(36600006-36600061)
[»] chr1 (29 HSPs)
chr1 (104-242)||(32591280-32591416)
chr1 (104-227)||(15474839-15474962)
chr1 (19-146)||(23773554-23773685)
chr1 (113-204)||(777276-777367)
chr1 (94-147)||(13281209-13281262)
chr1 (44-218)||(43019720-43019888)
chr1 (105-150)||(48420336-48420381)
chr1 (171-227)||(18115816-18115872)
chr1 (71-146)||(36605709-36605784)
chr1 (37-137)||(6045041-6045141)
chr1 (58-129)||(898712-898783)
chr1 (94-137)||(13315386-13315429)
chr1 (95-189)||(27579553-27579647)
chr1 (104-137)||(15596784-15596817)
chr1 (87-136)||(43416086-43416135)
chr1 (183-219)||(18115891-18115927)
chr1 (87-146)||(13309235-13309294)
chr1 (94-169)||(17504360-17504435)
chr1 (87-137)||(8209624-8209674)
chr1 (19-137)||(15874778-15874896)
chr1 (87-137)||(17580038-17580088)
chr1 (104-146)||(42676550-42676592)
chr1 (181-227)||(44066555-44066601)
chr1 (87-137)||(48455119-48455169)
chr1 (101-150)||(25222765-25222814)
chr1 (94-146)||(12266770-12266822)
chr1 (171-227)||(25182675-25182731)
chr1 (106-150)||(27928599-27928643)
chr1 (106-146)||(34555283-34555323)
[»] chr8 (19 HSPs)
chr8 (19-227)||(9187323-9187530)
chr8 (87-242)||(9788558-9788708)
chr8 (104-227)||(24411925-24412048)
chr8 (171-242)||(32345213-32345285)
chr8 (171-242)||(32361821-32361893)
chr8 (87-146)||(11929810-11929869)
chr8 (87-146)||(11941424-11941483)
chr8 (23-146)||(13369336-13369459)
chr8 (19-146)||(15044473-15044600)
chr8 (179-227)||(37370069-37370117)
chr8 (95-146)||(4535793-4535844)
chr8 (87-150)||(31268034-31268097)
chr8 (95-146)||(42862472-42862523)
chr8 (87-145)||(1759738-1759796)
chr8 (87-145)||(16822922-16822980)
chr8 (87-145)||(28969827-28969885)
chr8 (94-134)||(13575748-13575788)
chr8 (94-150)||(16243549-16243605)
chr8 (106-146)||(23085788-23085828)
[»] chr7 (31 HSPs)
chr7 (58-226)||(22701595-22701762)
chr7 (105-227)||(48103043-48103165)
chr7 (107-227)||(39522800-39522923)
chr7 (87-227)||(7809623-7809766)
chr7 (44-228)||(39465466-39465655)
chr7 (19-137)||(39786295-39786413)
chr7 (19-147)||(9334462-9334590)
chr7 (87-146)||(36251527-36251586)
chr7 (37-146)||(17038279-17038388)
chr7 (107-227)||(27484357-27484466)
chr7 (94-146)||(4785646-4785698)
chr7 (94-146)||(4818646-4818698)
chr7 (94-150)||(14553676-14553732)
chr7 (95-150)||(1460418-1460473)
chr7 (183-242)||(24034498-24034557)
chr7 (19-136)||(26710378-26710494)
chr7 (87-147)||(29693207-29693266)
chr7 (106-137)||(3531001-3531032)
chr7 (87-146)||(19396869-19396928)
chr7 (94-145)||(27724956-27725007)
chr7 (87-146)||(30908435-30908494)
chr7 (87-146)||(48109469-48109528)
chr7 (87-137)||(7468646-7468696)
chr7 (87-137)||(9412446-9412496)
chr7 (87-137)||(25834353-25834403)
chr7 (87-137)||(27250552-27250602)
chr7 (87-137)||(27723083-27723133)
chr7 (104-137)||(4996126-4996159)
chr7 (104-137)||(15994432-15994465)
chr7 (106-147)||(40417373-40417414)
chr7 (108-136)||(12328376-12328404)
[»] chr5 (17 HSPs)
chr5 (58-242)||(30841202-30841383)
chr5 (87-234)||(35583297-35583444)
chr5 (178-239)||(25536539-25536600)
chr5 (104-227)||(26620979-26621104)
chr5 (35-202)||(38098946-38099114)
chr5 (87-145)||(19288990-19289048)
chr5 (94-136)||(16312817-16312859)
chr5 (94-146)||(28400189-28400241)
chr5 (87-146)||(1612169-1612228)
chr5 (87-146)||(8839665-8839724)
chr5 (95-146)||(25536460-25536511)
chr5 (94-148)||(1093642-1093696)
chr5 (87-145)||(7464281-7464339)
chr5 (19-137)||(9616427-9616545)
chr5 (87-137)||(27174996-27175046)
chr5 (105-146)||(15341479-15341520)
chr5 (97-137)||(10542847-10542887)
[»] chr2 (21 HSPs)
chr2 (87-221)||(31555615-31555747)
chr2 (19-137)||(16039105-16039223)
chr2 (19-146)||(9243846-9243973)
chr2 (19-150)||(17640957-17641087)
chr2 (159-227)||(17874429-17874497)
chr2 (58-146)||(37867430-37867518)
chr2 (87-147)||(42444398-42444458)
chr2 (87-150)||(5879976-5880038)
chr2 (102-137)||(19133173-19133208)
chr2 (107-146)||(27912913-27912952)
chr2 (95-146)||(39809261-39809312)
chr2 (95-146)||(40301797-40301848)
chr2 (87-150)||(42651709-42651772)
chr2 (87-137)||(15248974-15249024)
chr2 (173-227)||(17873069-17873123)
chr2 (87-137)||(29462611-29462661)
chr2 (87-144)||(33134906-33134963)
chr2 (106-150)||(740906-740950)
chr2 (104-136)||(3171647-3171679)
chr2 (94-146)||(21566032-21566084)
chr2 (94-146)||(25915377-25915429)
[»] scaffold1017 (1 HSPs)
scaffold1017 (57-227)||(2344-2515)
[»] scaffold0092 (1 HSPs)
scaffold0092 (106-227)||(6515-6637)
[»] chr6 (12 HSPs)
chr6 (104-234)||(14912171-14912301)
chr6 (19-146)||(23124187-23124314)
chr6 (87-146)||(13240894-13240953)
chr6 (58-227)||(4965643-4965813)
chr6 (104-227)||(19707486-19707612)
chr6 (94-137)||(26306456-26306499)
chr6 (57-146)||(9894596-9894685)
chr6 (89-145)||(2441258-2441314)
chr6 (87-146)||(14426430-14426489)
chr6 (87-146)||(17942293-17942352)
chr6 (94-146)||(17829620-17829672)
chr6 (93-137)||(30591104-30591148)
[»] chr3 (19 HSPs)
chr3 (85-151)||(14770949-14771015)
chr3 (21-146)||(49758590-49758715)
chr3 (85-206)||(21967207-21967319)
chr3 (85-206)||(21989643-21989755)
chr3 (19-137)||(29626019-29626137)
chr3 (112-227)||(21082630-21082747)
chr3 (87-146)||(23267846-23267905)
chr3 (58-227)||(13475476-13475646)
chr3 (95-147)||(21495407-21495459)
chr3 (87-146)||(19468231-19468290)
chr3 (77-131)||(49429976-49430030)
chr3 (194-242)||(14770866-14770914)
chr3 (87-145)||(17589982-17590040)
chr3 (87-145)||(18875278-18875336)
chr3 (87-137)||(45879613-45879663)
chr3 (106-151)||(20838039-20838084)
chr3 (94-146)||(7791453-7791505)
chr3 (102-146)||(30806075-30806119)
chr3 (66-150)||(34667263-34667346)
[»] scaffold0013 (2 HSPs)
scaffold0013 (88-191)||(101338-101441)
scaffold0013 (194-242)||(101474-101522)
[»] scaffold0128 (1 HSPs)
scaffold0128 (19-146)||(43308-43435)
[»] scaffold0154 (1 HSPs)
scaffold0154 (58-146)||(32809-32897)
[»] scaffold0029 (1 HSPs)
scaffold0029 (183-227)||(72715-72759)
[»] scaffold0734 (1 HSPs)
scaffold0734 (87-150)||(4200-4263)
[»] scaffold0068 (1 HSPs)
scaffold0068 (106-146)||(57295-57335)


Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 19 - 239
Target Start/End: Original strand, 4609133 - 4609353
Alignment:
Q  19 tataaagaaaataacatcttttgattcttttgaactgtctttttctccttcgaaaatcatcatcatcattcaattcaaatatcatatataacaaatagat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  4609133 tataaagaaaataacatcttttgattcttttgaactgtctttttctccttcgaaaatcaccatcatcattcaattcaaatatcatatataacaaatagat 4609232  T
Q  119 aagagtaaattcaaatattcaaacaaaatgtatcctattttatatgtctgaatttttcattatcatttaaaaaagataatggatgagagtgaatttaaat 218  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  4609233 aagagtaaattcaaatattcaaacaaaatgtatcaaattttatatgtctgaatttttcgttatcatttaaaaaagataatggataagagtgaatttaaat 4609332  T
Q  219 attgaaaaagtgtaacgaaca 239  Q
    ||| ||||| |||||||||||    
T  4609333 atttaaaaaatgtaacgaaca 4609353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 106 - 241
Target Start/End: Complemental strand, 42398660 - 42398525
Alignment:
Q  106 ataacaaatagataagagtaaattcaaatattcaaacaaaatgtatcctattttatatgtctgaatttttcattatcatttaaaaaagataatggatgag 205  Q
    |||||||||||||||||||  ||| ||||||| |||||||||||| |  ||||| ||||||||| |||||  |||| ||||||||||||||||  | |||    
T  42398660 ataacaaatagataagagtgtatttaaatattaaaacaaaatgtaacaaattttgtatgtctgatttttttcttataatttaaaaaagataattaaagag 42398561  T
Q  206 agtgaatttaaatattgaaaaagtgtaacgaacaca 241  Q
    |||| ||| ||||||  ||||| |||||| ||||||    
T  42398560 agtggattcaaatatcaaaaaaatgtaacaaacaca 42398525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 87 - 221
Target Start/End: Original strand, 24637740 - 24637877
Alignment:
Q  87 ttcaattcaaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaatgtatcctattttatatgtctgaatttt-tcattatcatt 185  Q
    |||||| |||||| || ||| |||||||||||||||||||||||||||||| ||||  |||||| |  ||| ||||| ||||| |||| || ||||||||    
T  24637740 ttcaatacaaataacacatacaacaaatagataagagtaaattcaaatattgaaacccaatgtaacaaattgtatatctctgatttttatccttatcatt 24637839  T
Q  186 taaaaaagataatgga--tgagagtgaatttaaatatt 221  Q
    ||||||||||| ||||  ||||| |||||| |||||||    
T  24637840 taaaaaagatagtggatgtgagaatgaattcaaatatt 24637877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 87 - 146
Target Start/End: Complemental strand, 26510481 - 26510422
Alignment:
Q  87 ttcaattcaaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaa 146  Q
    |||||| ||||||||| |||||||||||||||||||||||||||||||||| ||| ||||    
T  26510481 ttcaatacaaatatcacatataacaaatagataagagtaaattcaaatattaaaataaaa 26510422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 104 - 150
Target Start/End: Original strand, 54983110 - 54983156
Alignment:
Q  104 atataacaaatagataagagtaaattcaaatattcaaacaaaatgta 150  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||    
T  54983110 atataacaaatagataagagtaaattcaaatattaaaacaaaatgta 54983156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 87 - 151
Target Start/End: Complemental strand, 47044523 - 47044459
Alignment:
Q  87 ttcaattcaaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaatgtat 151  Q
    |||||| |||||| || |||||||||||| ||||||||||||||||||||| ||||||| |||||    
T  47044523 ttcaatacaaatagcacatataacaaatatataagagtaaattcaaatattaaaacaaattgtat 47044459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 171 - 227
Target Start/End: Original strand, 54983205 - 54983261
Alignment:
Q  171 tttttcattatcatttaaaaaagataatggatgagagtgaatttaaatattgaaaaa 227  Q
    |||||| ||||||||||||||||||||||||||||||| |||| ||||||| |||||    
T  54983205 tttttccttatcatttaaaaaagataatggatgagagttaattcaaatattaaaaaa 54983261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 94 - 137
Target Start/End: Complemental strand, 32007019 - 32006976
Alignment:
Q  94 caaatatcatatataacaaatagataagagtaaattcaaatatt 137  Q
    |||||| |||||||||||||||||||||||||||||||||||||    
T  32007019 caaataacatatataacaaatagataagagtaaattcaaatatt 32006976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 117 - 227
Target Start/End: Original strand, 28808419 - 28808528
Alignment:
Q  117 ataagagtaaattcaaatattcaaacaaaatgtatcctattttatatgtctgaatttttcattatcatttaaaaaagataatggatgagagtgaatttaa 216  Q
    ||||||| ||||||||||||| ||||||| ||||    | | |||||||| |  |||||| ||||||||||||||||||||||||||| ||| |||| ||    
T  28808419 ataagagaaaattcaaatattaaaacaaa-tgtaataaactgtatatgtccgtttttttccttatcatttaaaaaagataatggatgaaagtaaattcaa 28808517  T
Q  217 atattgaaaaa 227  Q
    ||||| |||||    
T  28808518 atattaaaaaa 28808528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 87 - 137
Target Start/End: Complemental strand, 34410017 - 34409967
Alignment:
Q  87 ttcaattcaaatatcatatataacaaatagataagagtaaattcaaatatt 137  Q
    |||||| |||||| || ||||||||||||||||||||||||||||||||||    
T  34410017 ttcaatacaaataacacatataacaaatagataagagtaaattcaaatatt 34409967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 87 - 137
Target Start/End: Original strand, 53451069 - 53451119
Alignment:
Q  87 ttcaattcaaatatcatatataacaaatagataagagtaaattcaaatatt 137  Q
    |||||| |||||| || ||||||||||||||||||||||||||||||||||    
T  53451069 ttcaatacaaataacacatataacaaatagataagagtaaattcaaatatt 53451119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 59 - 175
Target Start/End: Original strand, 19545388 - 19545504
Alignment:
Q  59 ttttctccttcgaaaatcatcatcatcattcaattcaaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaatgtatcctattt 158  Q
    |||||| |||| ||||| | | ||| |||||||| |||||| || |||||| ||||| ||||||||||||| ||||||| ||| |||||||| |  | |     
T  19545388 ttttcttcttccaaaattaccttcaacattcaatgcaaatagcacatataagaaatatataagagtaaatttaaatattaaaataaaatgtaacaaactg 19545487  T
Q  159 tatatgtctgaattttt 175  Q
    ||||||||||| |||||    
T  19545488 tatatgtctgatttttt 19545504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 87 - 146
Target Start/End: Original strand, 34035706 - 34035765
Alignment:
Q  87 ttcaattcaaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaa 146  Q
    ||||||||||||| || ||||||||||||||||||  |||||||||||||| ||| ||||    
T  34035706 ttcaattcaaataacacatataacaaatagataaggataaattcaaatattaaaataaaa 34035765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 136
Target Start/End: Complemental strand, 2012022 - 2011908
Alignment:
Q  22 aaagaaaataacatcttttgattcttttgaactgtctttttctccttcgaaaatcatcatcatcattcaattcaaatatcatatataacaaatagataag 121  Q
    |||||||||||||| |||||  ||||||| | || ||||||||| ||  ||||| | | ||| | |||||| |||||  || |||||||||||| |||||    
T  2012022 aaagaaaataacatgttttgcctcttttggattgactttttctctttttaaaattaccctcaactttcaatacaaattacacatataacaaataaataag 2011923  T
Q  122 agtaaattcaaatat 136  Q
    | |||||||||||||    
T  2011922 aataaattcaaatat 2011908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 95 - 137
Target Start/End: Complemental strand, 50561490 - 50561448
Alignment:
Q  95 aaatatcatatataacaaatagataagagtaaattcaaatatt 137  Q
    ||||||||||||||| ||||||||||||||||||| |||||||    
T  50561490 aaatatcatatataataaatagataagagtaaatttaaatatt 50561448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 146
Target Start/End: Original strand, 34659085 - 34659137
Alignment:
Q  94 caaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaa 146  Q
    |||||| || |||||||||||||||||| ||||||||||||||| ||| ||||    
T  34659085 caaataacacatataacaaatagataagtgtaaattcaaatattgaaataaaa 34659137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 94 - 145
Target Start/End: Original strand, 10727236 - 10727287
Alignment:
Q  94 caaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaa 145  Q
    |||||| ||||| ||||||||| ||||||||||||| ||||||| |||||||    
T  10727236 caaataacatatgtaacaaatatataagagtaaatttaaatattaaaacaaa 10727287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 94 - 145
Target Start/End: Original strand, 10941005 - 10941056
Alignment:
Q  94 caaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaa 145  Q
    |||||| ||||| ||||||||| ||||||||||||| ||||||| |||||||    
T  10941005 caaataacatatgtaacaaatatataagagtaaatttaaatattaaaacaaa 10941056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 87 - 146
Target Start/End: Original strand, 43317444 - 43317503
Alignment:
Q  87 ttcaattcaaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaa 146  Q
    |||||| |||||| || || |||||||||||||||| |||||| ||||||| ||||||||    
T  43317444 ttcaatacaaataacacatgtaacaaatagataagaataaatttaaatattaaaacaaaa 43317503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 137
Target Start/End: Complemental strand, 23019623 - 23019573
Alignment:
Q  87 ttcaattcaaatatcatatataacaaatagataagagtaaattcaaatatt 137  Q
    |||||| |||||| || ||||||||||||||||||| |||||| |||||||    
T  23019623 ttcaatacaaataacacatataacaaatagataagaataaatttaaatatt 23019573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 137
Target Start/End: Original strand, 31135077 - 31135127
Alignment:
Q  87 ttcaattcaaatatcatatataacaaatagataagagtaaattcaaatatt 137  Q
    |||||| ||||||||| || |||||||||||||||| |||||| |||||||    
T  31135077 ttcaatacaaatatcacatgtaacaaatagataagaataaatttaaatatt 31135127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 145
Target Start/End: Complemental strand, 37143566 - 37143508
Alignment:
Q  87 ttcaattcaaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaa 145  Q
    |||||| |||||| || || |||||||||||||||| |||||| ||||||| |||||||    
T  37143566 ttcaatacaaataacacatgtaacaaatagataagaataaatttaaatattaaaacaaa 37143508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 137
Target Start/End: Complemental strand, 40314862 - 40314812
Alignment:
Q  87 ttcaattcaaatatcatatataacaaatagataagagtaaattcaaatatt 137  Q
    |||||| |||||| || ||||||||||||||||||| |||||| |||||||    
T  40314862 ttcaatacaaataacacatataacaaatagataagaataaatttaaatatt 40314812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 137
Target Start/End: Complemental strand, 40324938 - 40324888
Alignment:
Q  87 ttcaattcaaatatcatatataacaaatagataagagtaaattcaaatatt 137  Q
    |||||| |||||| || ||||||||||||||||||| |||||| |||||||    
T  40324938 ttcaatacaaataacacatataacaaatagataagaataaatttaaatatt 40324888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 227
Target Start/End: Complemental strand, 18362920 - 18362865
Alignment:
Q  171 tttttcattatcatttaaaaaagataatggatgagagtgaatttaaatattgaaaaa 227  Q
    |||||| |||||||||||||| ||||| ||||||||||||||| || |||| |||||    
T  18362920 tttttccttatcatttaaaaa-gataacggatgagagtgaattcaactattaaaaaa 18362865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 226
Target Start/End: Original strand, 19545518 - 19545566
Alignment:
Q  178 ttatcatttaaaaaagataatggatgagagtgaatttaaatattgaaaa 226  Q
    |||||||| ||| ||||||||||||||| ||||||| ||||||| ||||    
T  19545518 ttatcattcaaagaagataatggatgagtgtgaattcaaatattaaaaa 19545566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 146
Target Start/End: Original strand, 34334770 - 34334822
Alignment:
Q  94 caaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaa 146  Q
    |||||| || |||||| |||||||||| |||||||||||||||| ||| ||||    
T  34334770 caaataacaaatataataaatagataaaagtaaattcaaatattaaaataaaa 34334822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 227
Target Start/End: Original strand, 36600006 - 36600061
Alignment:
Q  171 tttttcattatcatttaaaaaagataatggatgagagtgaatttaaatattgaaaaa 227  Q
    |||||| |||||||||||||| ||||| ||||||||||||||| || |||| |||||    
T  36600006 tttttccttatcatttaaaaa-gataacggatgagagtgaattcaactattaaaaaa 36600061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 5e-37; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 104 - 242
Target Start/End: Complemental strand, 32591416 - 32591280
Alignment:
Q  104 atataacaaatagataagagtaaattcaaatattcaaacaaaatgtatcctattttatatgtctgaatttttcattatcatttaaaaaagataatggatg 203  Q
    ||||||||||||||||| |||||||||||||||| ||||||||||||    |||||||||||  || |||||| ||||||||||||||| ||||||||||    
T  32591416 atataacaaatagataaaagtaaattcaaatattaaaacaaaatgtaataaattttatatgttcgattttttctttatcatttaaaaaa-ataatggatg 32591318  T
Q  204 agagtgaatttaaatattgaaaaagtgtaacgaacacaa 242  Q
    |||||||||||||||||| |||||||||||| |||||||    
T  32591317 agagtgaatttaaatatt-aaaaagtgtaacaaacacaa 32591280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 104 - 227
Target Start/End: Original strand, 15474839 - 15474962
Alignment:
Q  104 atataacaaatagataagagtaaattcaaatattcaaacaaaatgtatcctattttatatgtctgaatttttcattatcatttaaaaaagataatggatg 203  Q
    |||||| ||||| |||||| |||||| ||||||| |||||||||||| |  ||| |||||||| || |||||| |||||||||||||| ||||| |||||    
T  15474839 atataagaaatatataagaataaatttaaatattaaaacaaaatgtaacaaattatatatgtccgattttttccttatcatttaaaaatgataacggatg 15474938  T
Q  204 agagtgaatttaaatattgaaaaa 227  Q
    |||||||||| ||||||| |||||    
T  15474939 agagtgaattcaaatattaaaaaa 15474962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 19 - 146
Target Start/End: Complemental strand, 23773685 - 23773554
Alignment:
Q  19 tataaagaaaataacatcttttgattcttttgaactgtctttttctccttcgaaaatcatcatcatcattcaattcaaata----tcatatataacaaat 114  Q
    ||||||||||||||||| ||| ||||||||||| ||||||||||||| ||| ||||| ||| |||   |||||| ||||||      | |||||||||||    
T  23773685 tataaagaaaataacatgtttcgattcttttgagctgtctttttctctttccaaaattatcctcaaatttcaatacaaatagaacaaacatataacaaat 23773586  T
Q  115 agataagagtaaattcaaatattcaaacaaaa 146  Q
    ||||||||||||||||||||||| ||| ||||    
T  23773585 agataagagtaaattcaaatattaaaataaaa 23773554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 113 - 204
Target Start/End: Complemental strand, 777367 - 777276
Alignment:
Q  113 atagataagagtaaattcaaatattcaaacaaaatgtatcctattttatatgtctgaatttttcattatcatttaaaaaagataatggatga 204  Q
    |||||||| |||||||||||||||| |||||||||||| |  | | ||||| || || |||||| ||||||||||||||| |||||||||||    
T  777367 atagataaaagtaaattcaaatattaaaacaaaatgtaacaaactatatatatccgattttttctttatcatttaaaaaaaataatggatga 777276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 94 - 147
Target Start/End: Complemental strand, 13281262 - 13281209
Alignment:
Q  94 caaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaat 147  Q
    |||||||||||||||||||||| ||||||||||||||||||||| ||| |||||    
T  13281262 caaatatcatatataacaaataaataagagtaaattcaaatattaaaataaaat 13281209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 44 - 218
Target Start/End: Original strand, 43019720 - 43019888
Alignment:
Q  44 tcttttgaactgtctttttctccttcgaaaatcatcatcatcattcaattcaaatatcatatataacaaatagataagagtaaattcaaa---tattcaa 140  Q
    ||||||||||||  |||||||||||  ||||| ||| ||| | |||||| | ||||||| |||||| ||||||||||||||||||| |||   |||| ||    
T  43019720 tcttttgaactgattttttctcctttcaaaattatcctcaactttcaatacgaatatcacatataataaatagataagagtaaatttaaatactattaaa 43019819  T
Q  141 acaaaatgtatcctattttatatgtctga-atttttcattatcatttaaaaaagataatggatgagagtgaatttaaat 218  Q
    ||||||||          |||||||||||  |||||  ||||||||||||||| ||||| |||||||||||||| ||||    
T  43019820 acaaaatg----------tatatgtctgatttttttgcttatcatttaaaaaaaataattgatgagagtgaattcaaat 43019888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 105 - 150
Target Start/End: Original strand, 48420336 - 48420381
Alignment:
Q  105 tataacaaatagataagagtaaattcaaatattcaaacaaaatgta 150  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||    
T  48420336 tataacaaatagataagagtaaattcaaatattaaaacaaaatgta 48420381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 171 - 227
Target Start/End: Original strand, 18115816 - 18115872
Alignment:
Q  171 tttttcattatcatttaaaaaagataatggatgagagtgaatttaaatattgaaaaa 227  Q
    |||||| | |||||| ||||||||||||||||||||||||||||||||||| |||||    
T  18115816 tttttcctcatcattcaaaaaagataatggatgagagtgaatttaaatattaaaaaa 18115872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 71 - 146
Target Start/End: Complemental strand, 36605784 - 36605709
Alignment:
Q  71 aaaatcatcatcatcattcaattcaaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaa 146  Q
    ||||| ||||||| |||||||| |||||| || |||||||||||||||||||| |||| |||||||| ||| ||||    
T  36605784 aaaattatcatcaacattcaatacaaataacacatataacaaatagataagaggaaatgcaaatattaaaataaaa 36605709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 37 - 137
Target Start/End: Complemental strand, 6045141 - 6045041
Alignment:
Q  37 ttttgattcttttgaactgtctttttctccttcgaaaatcatcatcatcattcaattcaaatatcatatataacaaatagataagagtaaattcaaatat 136  Q
    ||||||||||||||||||  ||||||||| ||  ||||| ||||||| | ||  || |||||| || | |||||||||||| || |||||||||||||||    
T  6045141 ttttgattcttttgaactaactttttctcttttcaaaattatcatcaactttttatacaaatagcacacataacaaatagacaatagtaaattcaaatat 6045042  T
Q  137 t 137  Q
    |    
T  6045041 t 6045041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 129
Target Start/End: Original strand, 898712 - 898783
Alignment:
Q  58 tttttctccttcgaaaatcatcatcatcattcaattcaaatatcatatataacaaatagataagagtaaatt 129  Q
    |||||||| ||| ||||| | | ||| |||||||| |||||| || ||||||||||||||||||||||||||    
T  898712 tttttctctttccaaaattaccttcaacattcaatacaaatagcacatataacaaatagataagagtaaatt 898783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 94 - 137
Target Start/End: Complemental strand, 13315429 - 13315386
Alignment:
Q  94 caaatatcatatataacaaatagataagagtaaattcaaatatt 137  Q
    |||||| ||||||||||||||||||||||||||||| |||||||    
T  13315429 caaataacatatataacaaatagataagagtaaatttaaatatt 13315386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 95 - 189
Target Start/End: Complemental strand, 27579647 - 27579553
Alignment:
Q  95 aaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaatgtatcctattttatatgtctgaatttttcattatcatttaaa 189  Q
    ||||| || |||||| |||||||||||||| |||| ||||||| || ||||||||| |  | | |||||||| || |||||| ||||||||||||    
T  27579647 aaataacacatataataaatagataagagtgaatttaaatattaaagcaaaatgtaacaaactgtatatgtccgattttttccttatcatttaaa 27579553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 104 - 137
Target Start/End: Original strand, 15596784 - 15596817
Alignment:
Q  104 atataacaaatagataagagtaaattcaaatatt 137  Q
    ||||||||||||||||||||||||||||||||||    
T  15596784 atataacaaatagataagagtaaattcaaatatt 15596817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 87 - 136
Target Start/End: Complemental strand, 43416135 - 43416086
Alignment:
Q  87 ttcaattcaaatatcatatataacaaatagataagagtaaattcaaatat 136  Q
    |||||| |||||| || ||||||||||| |||||||||||||||||||||    
T  43416135 ttcaatgcaaataacacatataacaaattgataagagtaaattcaaatat 43416086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 219
Target Start/End: Original strand, 18115891 - 18115927
Alignment:
Q  183 atttaaaaaagataatggatgagagtgaatttaaata 219  Q
    ||||||||||||||||||||||||||||||| |||||    
T  18115891 atttaaaaaagataatggatgagagtgaattcaaata 18115927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 87 - 146
Target Start/End: Original strand, 13309235 - 13309294
Alignment:
Q  87 ttcaattcaaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaa 146  Q
    |||||| |||||| || |||||| ||||||||||||| ||||||||||||| ||| ||||    
T  13309235 ttcaatacaaataacacatataataaatagataagagaaaattcaaatattaaaataaaa 13309294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 94 - 169
Target Start/End: Original strand, 17504360 - 17504435
Alignment:
Q  94 caaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaatgtatcctattttatatgtctga 169  Q
    |||||| || ||||||||||||||||| | |||| ||||||||| ||| |||||||| |  ||| |||||||||||    
T  17504360 caaataacacatataacaaatagataaaaataaactcaaatattaaaataaaatgtaacaaattgtatatgtctga 17504435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 137
Target Start/End: Complemental strand, 8209674 - 8209624
Alignment:
Q  87 ttcaattcaaatatcatatataacaaatagataagagtaaattcaaatatt 137  Q
    |||||| |||||| || |||||||||||| |||||| ||||||||||||||    
T  8209674 ttcaatacaaatagcacatataacaaatacataagaataaattcaaatatt 8209624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 137
Target Start/End: Original strand, 15874778 - 15874896
Alignment:
Q  19 tataaagaaaataacatcttttgattcttttgaactgtctttttctccttcgaaaatcatcatcatcattcaattcaaatatcatatataacaaatagat 118  Q
    ||||||||||||||| |||||   |||||||   ||| ||||||||| ||| ||||  ||| |||   ||||||||||||| || || ||||||||||||    
T  15874778 tataaagaaaataacctctttcagttcttttaggctgcctttttctctttccaaaaatatcctcaattttcaattcaaataacacatgtaacaaatagat 15874877  T
Q  119 aagagtaaattcaaatatt 137  Q
    |||  |||||| |||||||    
T  15874878 aaggataaatttaaatatt 15874896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 137
Target Start/End: Complemental strand, 17580088 - 17580038
Alignment:
Q  87 ttcaattcaaatatcatatataacaaatagataagagtaaattcaaatatt 137  Q
    |||||| |||||| ||||| |||||||||||||||| |||||| |||||||    
T  17580088 ttcaatacaaataacatatgtaacaaatagataagaataaatttaaatatt 17580038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 146
Target Start/End: Original strand, 42676550 - 42676592
Alignment:
Q  104 atataacaaatagataagagtaaattcaaatattcaaacaaaa 146  Q
    |||||||||||||||||| ||||||||||||||| ||| ||||    
T  42676550 atataacaaatagataagggtaaattcaaatattaaaataaaa 42676592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 44066601 - 44066555
Alignment:
Q  181 tcatttaaaaaagataatggatgagagtgaatttaaatattgaaaaa 227  Q
    |||||||||||||||||  |||||||||||||| ||||||| |||||    
T  44066601 tcatttaaaaaagataacagatgagagtgaattcaaatattaaaaaa 44066555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 137
Target Start/End: Original strand, 48455119 - 48455169
Alignment:
Q  87 ttcaattcaaatatcatatataacaaatagataagagtaaattcaaatatt 137  Q
    ||||||||||||| ||||| | |||||||||||||| |||||| |||||||    
T  48455119 ttcaattcaaataacatatgtgacaaatagataagaataaatttaaatatt 48455169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 101 - 150
Target Start/End: Complemental strand, 25222814 - 25222765
Alignment:
Q  101 catatataacaaatagataagagtaaattcaaatattcaaacaaaatgta 150  Q
    ||||||||||||| |||||||  |||||||||||||| || |||||||||    
T  25222814 catatataacaaacagataagtataaattcaaatattaaaccaaaatgta 25222765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 146
Target Start/End: Original strand, 12266770 - 12266822
Alignment:
Q  94 caaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaa 146  Q
    |||||| || |||||||||||||||||||||||| | ||||||| ||| ||||    
T  12266770 caaataacacatataacaaatagataagagtaaacttaaatattaaaataaaa 12266822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 227
Target Start/End: Complemental strand, 25182731 - 25182675
Alignment:
Q  171 tttttcattatcatttaaaaaagataatggatgagagtgaatttaaatattgaaaaa 227  Q
    |||||| ||||||||||||||||||||| ||||| || ||||| |||| || |||||    
T  25182731 tttttccttatcatttaaaaaagataatagatgaaagcgaattcaaatgttaaaaaa 25182675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 150
Target Start/End: Complemental strand, 27928643 - 27928599
Alignment:
Q  106 ataacaaatagataagagtaaattcaaatattcaaacaaaatgta 150  Q
    |||||||||| ||||||||||||| ||||||| ||| ||||||||    
T  27928643 ataacaaataaataagagtaaattaaaatattaaaaaaaaatgta 27928599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 146
Target Start/End: Original strand, 34555283 - 34555323
Alignment:
Q  106 ataacaaatagataagagtaaattcaaatattcaaacaaaa 146  Q
    |||||||||| ||||||||||||||||||||| ||| ||||    
T  34555283 ataacaaatacataagagtaaattcaaatattaaaataaaa 34555323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 77; Significance: 8e-36; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 19 - 227
Target Start/End: Original strand, 9187323 - 9187530
Alignment:
Q  19 tataaagaaaataacatcttttgattcttttgaactgtctttttctccttcgaaaatcatcatcatcattcaattcaaatatcatatataacaaatagat 118  Q
    |||||||||||||   |||||||  || ||||  ||| ||||||||| ||| ||||||| ||||| |||||||| |||||| ||||||||||||||||||    
T  9187323 tataaagaaaatagtctcttttggctcatttgtgctgactttttctcattccaaaatcaccatcaacattcaatacaaataacatatataacaaatagat 9187422  T
Q  119 aagagtaaattcaaatattcaaacaaaatgtatcctattttatatgtctgaatttttcattatcatttaaaaaagataatggatgagagtgaatttaaat 218  Q
    ||  ||||||||||||||| ||| |||||||| |  | | |||||||| | |||||| ||||||||||||||||||||||| ||||| || |||| ||||    
T  9187423 aaaggtaaattcaaatattaaaataaaatgtaacaaactgtatatgtccg-attttttattatcatttaaaaaagataatgaatgagtgtaaattcaaat 9187521  T
Q  219 attgaaaaa 227  Q
    ||| |||||    
T  9187522 attaaaaaa 9187530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 87 - 242
Target Start/End: Original strand, 9788558 - 9788708
Alignment:
Q  87 ttcaattcaaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaatgtatcctattttatatgtctgaatttttcattatcattt 186  Q
    |||||| ||||||  | ||||||||||||||||| |||||||||||||| | |||||||||||| |  ||| |||||| |||| |||||| |||||||||    
T  9788558 ttcaatgcaaataggaaatataacaaatagataatagtaaattcaaataataaaacaaaatgtaacaaattgtatatgcctgattttttctttatcattt 9788657  T
Q  187 aaaaaagataatggatgagagtgaatttaaatattgaaaaagtgtaacgaacacaa 242  Q
    ||||||||||||     |||||||||||||||||| ||||| | |||| |||||||    
T  9788658 aaaaaagataat-----agagtgaatttaaatattaaaaaattataacaaacacaa 9788708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 104 - 227
Target Start/End: Complemental strand, 24412048 - 24411925
Alignment:
Q  104 atataacaaatagataagagtaaattcaaatattcaaacaaaatgtatcctattttatatgtctgaatttttcattatcatttaaaaaagataatggatg 203  Q
    |||||||||||||||||| ||||||||||||||| ||||||||||||    ||| |||| ||  || |||||  |||||||||||||||||||||||||     
T  24412048 atataacaaatagataagggtaaattcaaatattaaaacaaaatgtaataaattgtataagttcgatttttttcttatcatttaaaaaagataatggatc 24411949  T
Q  204 agagtgaatttaaatattgaaaaa 227  Q
    | ||| |||| ||||||| |||||    
T  24411948 aaagttaattcaaatattaaaaaa 24411925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 171 - 242
Target Start/End: Complemental strand, 32345285 - 32345213
Alignment:
Q  171 tttttcattatcatttaaaaaagataatggatgagagtgaatttaaatattga-aaaagtgtaacgaacacaa 242  Q
    |||||| |||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||| |||||||    
T  32345285 tttttccttatcatttaaaaaagataatggatgagagtgaattcaaatattaacaaaagtgtaacaaacacaa 32345213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 171 - 242
Target Start/End: Complemental strand, 32361893 - 32361821
Alignment:
Q  171 tttttcattatcatttaaaaaagataatggatgagagtgaatttaaatattga-aaaagtgtaacgaacacaa 242  Q
    |||||| |||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||| |||||||    
T  32361893 tttttccttatcatttaaaaaagataatggatgagagtgaattcaaatattaacaaaagtgtaacaaacacaa 32361821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 87 - 146
Target Start/End: Complemental strand, 11929869 - 11929810
Alignment:
Q  87 ttcaattcaaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaa 146  Q
    |||||| |||||| || |||||||||||||||||||||||||||||||||| ||| ||||    
T  11929869 ttcaatacaaataacacatataacaaatagataagagtaaattcaaatattaaaataaaa 11929810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 87 - 146
Target Start/End: Original strand, 11941424 - 11941483
Alignment:
Q  87 ttcaattcaaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaa 146  Q
    |||||| |||||| || |||||||||||||||||||||||||||||||||| ||| ||||    
T  11941424 ttcaatacaaataacacatataacaaatagataagagtaaattcaaatattaaaataaaa 11941483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 146
Target Start/End: Complemental strand, 13369459 - 13369336
Alignment:
Q  23 aagaaaataacatcttttgattcttttgaactgtctttttctccttcgaaaatcatcatcatcattcaattcaaatatcatatataacaaatagataaga 122  Q
    ||||||||||||| |||||  |||||||| ||  ||||||||| ||  ||||| | | ||| | |||||| |||||| || |||||| ||||||||||||    
T  13369459 aagaaaataacatgttttggctcttttgagcttactttttctcttttcaaaattaccctcaactttcaatacaaataacacatataataaatagataaga 13369360  T
Q  123 gtaaattcaaatattcaaacaaaa 146  Q
    ||| ||||||||||| ||| ||||    
T  13369359 gtacattcaaatattaaaataaaa 13369336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 146
Target Start/End: Complemental strand, 15044600 - 15044473
Alignment:
Q  19 tataaagaaaataacatcttttgattcttttgaactgtctttttctccttcgaaaatcatcatcatcattcaattcaaatatcatatataacaaatagat 118  Q
    ||||||||||||| ||| ||||| ||||||||   || ||||||||  |||  |||| | | ||| | |||||| |||||| || |||||||||||||||    
T  15044600 tataaagaaaatagcatgttttgtttcttttgggttgactttttctttttccgaaattaccctcaactttcaatacaaataacacatataacaaatagat 15044501  T
Q  119 aagagtaaattcaaatattcaaacaaaa 146  Q
    |||| |||||||||||||| ||| ||||    
T  15044500 aagattaaattcaaatattaaaataaaa 15044473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 227
Target Start/End: Original strand, 37370069 - 37370117
Alignment:
Q  179 tatcatttaaaaaagataatggatgagagtgaatttaaatattgaaaaa 227  Q
    ||||||||||||||||||||||||||||| ||||| ||| ||| |||||    
T  37370069 tatcatttaaaaaagataatggatgagagagaattcaaaaattaaaaaa 37370117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 95 - 146
Target Start/End: Original strand, 4535793 - 4535844
Alignment:
Q  95 aaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaa 146  Q
    ||||| || |||||| ||||||||||||||||||||||||||| ||| ||||    
T  4535793 aaataacacatataataaatagataagagtaaattcaaatattaaaataaaa 4535844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 87 - 150
Target Start/End: Complemental strand, 31268097 - 31268034
Alignment:
Q  87 ttcaattcaaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaatgta 150  Q
    |||||| ||| || ||||||||| ||||| || | |||||||||||||||| ||||||||||||    
T  31268097 ttcaatacaagtagcatatataagaaataaattaaagtaaattcaaatattaaaacaaaatgta 31268034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 95 - 146
Target Start/End: Original strand, 42862472 - 42862523
Alignment:
Q  95 aaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaa 146  Q
    ||||| || |||||||||||| ||||||||||||||||||||| ||| ||||    
T  42862472 aaataacacatataacaaataaataagagtaaattcaaatattaaaataaaa 42862523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 145
Target Start/End: Complemental strand, 1759796 - 1759738
Alignment:
Q  87 ttcaattcaaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaa 145  Q
    |||||| ||||||  | ||||||||||||||||||| |||||| ||||||| |||||||    
T  1759796 ttcaatacaaataataaatataacaaatagataagaataaatttaaatattaaaacaaa 1759738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 145
Target Start/End: Complemental strand, 16822980 - 16822922
Alignment:
Q  87 ttcaattcaaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaa 145  Q
    |||||| |||||| || || |||||||||||||||| |||||| ||||||| |||||||    
T  16822980 ttcaatacaaataacacatgtaacaaatagataagaataaatttaaatattaaaacaaa 16822922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 145
Target Start/End: Complemental strand, 28969885 - 28969827
Alignment:
Q  87 ttcaattcaaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaa 145  Q
    |||||| |||||| || ||||||||||||||||||| ||| || ||||||| |||||||    
T  28969885 ttcaatacaaataacacatataacaaatagataagaataagtttaaatattaaaacaaa 28969827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 134
Target Start/End: Complemental strand, 13575788 - 13575748
Alignment:
Q  94 caaatatcatatataacaaatagataagagtaaattcaaat 134  Q
    |||||| |||||||||||| || ||||||||||||||||||    
T  13575788 caaataacatatataacaagtatataagagtaaattcaaat 13575748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 150
Target Start/End: Original strand, 16243549 - 16243605
Alignment:
Q  94 caaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaatgta 150  Q
    |||||| || || ||| ||||||||||||||||||||||||||| ||| ||| ||||    
T  16243549 caaataacacatgtaaaaaatagataagagtaaattcaaatattaaaataaagtgta 16243605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 146
Target Start/End: Original strand, 23085788 - 23085828
Alignment:
Q  106 ataacaaatagataagagtaaattcaaatattcaaacaaaa 146  Q
    ||||||||||||||||||| |||||||||||| ||| ||||    
T  23085788 ataacaaatagataagagtcaattcaaatattaaaataaaa 23085828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 8e-36; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 58 - 226
Target Start/End: Original strand, 22701595 - 22701762
Alignment:
Q  58 tttttctccttcgaaaatcatcatcatcattcaattcaaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaatgtatcctatt 157  Q
    |||||||||||| ||||| | | ||| | |||| | | ||||||| |||||||||||||||||||||||||||||||||| ||| |||||||| |  |||    
T  22701595 tttttctccttccaaaattaccctcaactttcattgcgaatatcacatataacaaatagataagagtaaattcaaatattaaaataaaatgtaacaaatt 22701694  T
Q  158 ttatatgtctgaatttttcattatcatttaaaaaagataatggatgagagtgaatttaaatattgaaaa 226  Q
     ||||||||||  |||||| ||||| |||||||||||||||||||||||||||||| ||||||| ||||    
T  22701695 gtatatgtctg-ttttttccttatcgtttaaaaaagataatggatgagagtgaattcaaatatttaaaa 22701762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 105 - 227
Target Start/End: Original strand, 48103043 - 48103165
Alignment:
Q  105 tataacaaatagataagagtaaattcaaatattcaaacaaaatgtatcctattttatatgtctgaatttttcattatcatttaaaaaagataatggatga 204  Q
    ||||| ||||||||||||||||||||||||||| |||||||||||  |  ||| ||||| ||  | |||||| ||||||||| ||||||||||| || ||    
T  48103043 tataaaaaatagataagagtaaattcaaatattaaaacaaaatgtgacaaattatatatatcctattttttccttatcattttaaaaagataatagacga 48103142  T
Q  205 gagtgaatttaaatattgaaaaa 227  Q
    ||||||||| ||||||| |||||    
T  48103143 gagtgaattcaaatattaaaaaa 48103165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 107 - 227
Target Start/End: Original strand, 39522800 - 39522923
Alignment:
Q  107 taacaaatagataagagtaaattcaaatattcaaacaaaatgtatcctattttatatgtctg---aatttttcattatcatttaaaaaagataatggatg 203  Q
    |||||||||||||||||||| |||||||||  |||||||||||| | |||| ||||| ||||   | |||||| || |||||||||||||| ||||||||    
T  39522800 taacaaatagataagagtaatttcaaatatcaaaacaaaatgtaacatattgtatatttctgattattttttccttttcatttaaaaaagacaatggatg 39522899  T
Q  204 agagtgaatttaaatattgaaaaa 227  Q
    | |||||||| ||||||| |||||    
T  39522900 aaagtgaattcaaatattaaaaaa 39522923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 87 - 227
Target Start/End: Original strand, 7809623 - 7809766
Alignment:
Q  87 ttcaattcaaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaatgtatccta----ttttatatgtctgaatttttcattatc 182  Q
    |||||| ||||||  |||||||||||| ||||||||||||||| ||||||| ||| ||||| || |  |    || ||||| ||||| |||||| |||||    
T  7809623 ttcaatacaaataatatatataacaaacagataagagtaaatttaaatattaaaa-aaaatataacaaacaaattctatatatctgattttttccttatc 7809721  T
Q  183 atttaaaaaagataatggatgagagtgaatttaaatattgaaaaa 227  Q
    ||||||||||||||| |||||||| |||||||||||||| |||||    
T  7809722 atttaaaaaagataaaggatgagactgaatttaaatattaaaaaa 7809766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 44 - 228
Target Start/End: Complemental strand, 39465655 - 39465466
Alignment:
Q  44 tcttttgaactgtcttttt-ctccttcgaaaatcatcatcatcattcaattcaaatatcatatataacaaatagataagagtaaattcaaatattcaaac 142  Q
    |||||||||||| |||||| ||||||  ||||| | | ||| | |||||| ||||||  | ||||||||||||||||| |||||||||||||||| ||||    
T  39465655 tcttttgaactgccttttttctcctttcaaaattaccctcaactttcaatacaaataatacatataacaaatagataaaagtaaattcaaatattaaaac 39465556  T
Q  143 aaaatgtatcctattttatatgtctgaattttt----cattatcatttaaaaaagataatggatgagagtgaatttaaatattgaaaaag 228  Q
     |||| |     ||| ||||||| ||| |||||    | |||||||||||||||||||||| | ||||||||||| ||||||| ||||||    
T  39465555 gaaatcttaaaaattgtatatgtttgattttttttttccttatcatttaaaaaagataatgtacgagagtgaattcaaatattaaaaaag 39465466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 19 - 137
Target Start/End: Original strand, 39786295 - 39786413
Alignment:
Q  19 tataaagaaaataacatcttttgattcttttgaactgtctttttctccttcgaaaatcatcatcatcattcaattcaaatatcatatataacaaatagat 118  Q
    ||||||||||||| ||| || ||| |||||||  ||| ||||||||| ||| ||||  | | ||| | |||||| |||||| || |||||||||||||||    
T  39786295 tataaagaaaatagcatgttctgactcttttgggctgactttttctctttccaaaactaccctcaactttcaatacaaataacacatataacaaatagat 39786394  T
Q  119 aagagtaaattcaaatatt 137  Q
    |||||||||||||||||||    
T  39786395 aagagtaaattcaaatatt 39786413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 147
Target Start/End: Original strand, 9334462 - 9334590
Alignment:
Q  19 tataaagaaaataacatcttttgattcttttgaactgtctttttctccttcgaaaatcatcatcatcattcaattcaaatatcatatataacaaatagat 118  Q
    ||||||||||||||||| |||||| |||||||  ||| | ||||||| ||  ||||| | | |||   |||||| ||||||  |||||||||||||||||    
T  9334462 tataaagaaaataacatgttttgactcttttgggctgacattttctcttttcaaaattaccctcaattttcaatacaaataatatatataacaaatagat 9334561  T
Q  119 aagagtaaattcaaatattcaaacaaaat 147  Q
    || |||| ||||||||||| ||| |||||    
T  9334562 aaaagtagattcaaatattaaaagaaaat 9334590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 87 - 146
Target Start/End: Original strand, 36251527 - 36251586
Alignment:
Q  87 ttcaattcaaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaa 146  Q
    |||||| |||||| || |||||||||||||||||||||||||||||||||| ||| ||||    
T  36251527 ttcaatacaaataacacatataacaaatagataagagtaaattcaaatattaaaataaaa 36251586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 37 - 146
Target Start/End: Original strand, 17038279 - 17038388
Alignment:
Q  37 ttttgattcttttgaactgtctttttctccttcgaaaatcatcatcatcattcaattcaaatatcatatataacaaatagataagagtaaattcaaatat 136  Q
    ||||||||||||||  |||  |||||||| ||  ||||| |  |||| | |||||| |||||  || |||||||||||||||||||||||||||||||||    
T  17038279 ttttgattcttttgggctgaatttttctcttttcaaaattacaatcaactttcaatacaaattgcacatataacaaatagataagagtaaattcaaatat 17038378  T
Q  137 tcaaacaaaa 146  Q
    | ||| ||||    
T  17038379 taaaataaaa 17038388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 107 - 227
Target Start/End: Complemental strand, 27484466 - 27484357
Alignment:
Q  107 taacaaatagataagagtaaattcaaatattcaaacaaaatgtatcctattttatatgtctgaatttttcattatcatttaaaaaagataatggatgaga 206  Q
    |||||||||||||||| |||||||||||||| ||||||||||          ||| |||| || |||||| ||||| ||||||||||||||||||||| |    
T  27484466 taacaaatagataagattaaattcaaatattaaaacaaaatg----------tatgtgtccgattttttc-ttatcgtttaaaaaagataatggatgaaa 27484378  T
Q  207 gtgaatttaaatattgaaaaa 227  Q
    || |||| ||||||| |||||    
T  27484377 gtaaattcaaatattaaaaaa 27484357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 94 - 146
Target Start/End: Complemental strand, 4785698 - 4785646
Alignment:
Q  94 caaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaa 146  Q
    |||||| || |||||| ||||||||||||||||||||||||||||||| ||||    
T  4785698 caaatagcacatataataaatagataagagtaaattcaaatattcaaataaaa 4785646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 94 - 146
Target Start/End: Complemental strand, 4818698 - 4818646
Alignment:
Q  94 caaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaa 146  Q
    |||||| || |||||| ||||||||||||||||||||||||||||||| ||||    
T  4818698 caaatagcacatataataaatagataagagtaaattcaaatattcaaataaaa 4818646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 94 - 150
Target Start/End: Complemental strand, 14553732 - 14553676
Alignment:
Q  94 caaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaatgta 150  Q
    |||||| || ||||||||||||||||| |||||||||||||||||||| | ||||||    
T  14553732 caaatagcacatataacaaatagataaaagtaaattcaaatattcaaaaataatgta 14553676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 95 - 150
Target Start/End: Original strand, 1460418 - 1460473
Alignment:
Q  95 aaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaatgta 150  Q
    ||||| || |||||||||||| |||| |||||||||||||||| ||||||||||||    
T  1460418 aaataacacatataacaaatatataatagtaaattcaaatatttaaacaaaatgta 1460473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 183 - 242
Target Start/End: Complemental strand, 24034557 - 24034498
Alignment:
Q  183 atttaaaaaagataatggatgagagtgaatttaaatattgaaaaagtgtaacgaacacaa 242  Q
    |||||||||| |||||| ||||||| ||||| ||||||| |||||||||||| |||||||    
T  24034557 atttaaaaaatataatgaatgagagcgaattcaaatattaaaaaagtgtaacaaacacaa 24034498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 136
Target Start/End: Complemental strand, 26710494 - 26710378
Alignment:
Q  19 tataaagaaaataacatcttttgattcttttgaactgtctttttctccttcgaaaatcatcatcatcattcaattcaaatatcatatataacaaatagat 118  Q
    |||||||||||||| || |||||  |||||||| |||  ||||| || ||  ||||| ||  ||| ||||||||  ||||| || |||||||||||||||    
T  26710494 tataaagaaaataatatgttttgtctcttttgagctgatttttt-tctttttaaaattatattcaacattcaatataaataacacatataacaaatagat 26710396  T
Q  119 aagagtaaattcaaatat 136  Q
    |||| |||||||||||||    
T  26710395 aagaataaattcaaatat 26710378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 147
Target Start/End: Original strand, 29693207 - 29693266
Alignment:
Q  87 ttcaattcaaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaat 147  Q
    |||||| |||||| || ||||||| ||||||| |||||||||||||||||| |||||||||    
T  29693207 ttcaatgcaaataaca-atataacgaatagatgagagtaaattcaaatattaaaacaaaat 29693266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 106 - 137
Target Start/End: Original strand, 3531001 - 3531032
Alignment:
Q  106 ataacaaatagataagagtaaattcaaatatt 137  Q
    ||||||||||||||||||||||||||||||||    
T  3531001 ataacaaatagataagagtaaattcaaatatt 3531032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 87 - 146
Target Start/End: Original strand, 19396869 - 19396928
Alignment:
Q  87 ttcaattcaaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaa 146  Q
    ||||||||||||| || || |||||||||||||||| |||||| ||||||| ||| ||||    
T  19396869 ttcaattcaaataacacatgtaacaaatagataagaataaatttaaatattaaaataaaa 19396928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 94 - 145
Target Start/End: Complemental strand, 27725007 - 27724956
Alignment:
Q  94 caaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaa 145  Q
    |||||| ||||| |||||||||||||||| |||||| ||||||| |||||||    
T  27725007 caaataacatatgtaacaaatagataagaataaatttaaatattaaaacaaa 27724956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 87 - 146
Target Start/End: Original strand, 30908435 - 30908494
Alignment:
Q  87 ttcaattcaaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaa 146  Q
    |||||| |||||| || |||||| |||||||||| |||||||||||||||| ||| ||||    
T  30908435 ttcaatacaaataacacatataataaatagataaaagtaaattcaaatattaaaataaaa 30908494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 87 - 146
Target Start/End: Original strand, 48109469 - 48109528
Alignment:
Q  87 ttcaattcaaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaa 146  Q
    |||||| |||||| ||||| ||| |||||||||| | |||||||||||||||||| ||||    
T  48109469 ttcaatacaaataacatatttaaaaaatagataaaaataaattcaaatattcaaataaaa 48109528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 137
Target Start/End: Original strand, 7468646 - 7468696
Alignment:
Q  87 ttcaattcaaatatcatatataacaaatagataagagtaaattcaaatatt 137  Q
    |||||| |||||| ||||| |||||||||||||||| |||||| |||||||    
T  7468646 ttcaatacaaataacatatgtaacaaatagataagaataaatttaaatatt 7468696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 137
Target Start/End: Original strand, 9412446 - 9412496
Alignment:
Q  87 ttcaattcaaatatcatatataacaaatagataagagtaaattcaaatatt 137  Q
    |||||| |||||| || ||||||||||||||||||| |||||| |||||||    
T  9412446 ttcaatacaaataacacatataacaaatagataagaataaatttaaatatt 9412496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 137
Target Start/End: Original strand, 25834353 - 25834403
Alignment:
Q  87 ttcaattcaaatatcatatataacaaatagataagagtaaattcaaatatt 137  Q
    |||||| |||||| ||||| |||||||||||||||| |||||| |||||||    
T  25834353 ttcaatacaaataacatatgtaacaaatagataagaataaatttaaatatt 25834403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 137
Target Start/End: Original strand, 27250552 - 27250602
Alignment:
Q  87 ttcaattcaaatatcatatataacaaatagataagagtaaattcaaatatt 137  Q
    |||||| |||||| || ||||||||||||||||||| |||||| |||||||    
T  27250552 ttcaatacaaataacacatataacaaatagataagaataaatttaaatatt 27250602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 137
Target Start/End: Complemental strand, 27723133 - 27723083
Alignment:
Q  87 ttcaattcaaatatcatatataacaaatagataagagtaaattcaaatatt 137  Q
    |||||| |||||| ||||| |||||||||||||||| |||||| |||||||    
T  27723133 ttcaatacaaataacatatgtaacaaatagataagaataaatttaaatatt 27723083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 104 - 137
Target Start/End: Original strand, 4996126 - 4996159
Alignment:
Q  104 atataacaaatagataagagtaaattcaaatatt 137  Q
    |||||||||||||||||||||||||| |||||||    
T  4996126 atataacaaatagataagagtaaatttaaatatt 4996159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 104 - 137
Target Start/End: Complemental strand, 15994465 - 15994432
Alignment:
Q  104 atataacaaatagataagagtaaattcaaatatt 137  Q
    ||||||||||||||||| ||||||||||||||||    
T  15994465 atataacaaatagataaaagtaaattcaaatatt 15994432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 106 - 147
Target Start/End: Original strand, 40417373 - 40417414
Alignment:
Q  106 ataacaaatagataagagtaaattcaaatattcaaacaaaat 147  Q
    ||||||||||||||||||||||| |||||||| ||| |||||    
T  40417373 ataacaaatagataagagtaaatgcaaatattaaaataaaat 40417414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 136
Target Start/End: Complemental strand, 12328404 - 12328376
Alignment:
Q  108 aacaaatagataagagtaaattcaaatat 136  Q
    |||||||||||||||||||||||||||||    
T  12328404 aacaaatagataagagtaaattcaaatat 12328376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 5e-31; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 58 - 242
Target Start/End: Complemental strand, 30841383 - 30841202
Alignment:
Q  58 tttttctccttcgaaaatcatcatcatcattcaattcaaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaatgtatcctatt 157  Q
    |||||||||||| ||||| | | ||| | ||||||  |||||  | ||||||||||||| |||||||||||| ||||||| |||||||||||| |  |||    
T  30841383 tttttctccttctaaaattaccctcaactttcaataaaaataaaacatataacaaatag-taagagtaaatttaaatattaaaacaaaatgtaacaaatt 30841285  T
Q  158 ttatatgtctgaatttttcattatcatttaaaaaagataatggatgagagtgaatttaaatattgaaaaagtgtaacgaacacaa 242  Q
     ||||||||||| |||||  ||| ||||||||||||||||||||||| |||||||| ||||||| |||||||||||| |||||||    
T  30841284 gtatatgtctgattttttt-ttaccatttaaaaaagataatggatgacagtgaattcaaatatt-aaaaagtgtaacaaacacaa 30841202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 87 - 234
Target Start/End: Complemental strand, 35583444 - 35583297
Alignment:
Q  87 ttcaattcaaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaatgtatcctattttatatgtctgaatttttcattatcattt 186  Q
    |||||| |||||| || |||||||||| |||||||| ||||||||||||||  ||||||||||| |    | | ||||||    |||||| |||| ||||    
T  35583444 ttcaatacaaataacacatataacaaaaagataagattaaattcaaatattataacaaaatgtaacaagctgtttatgtccatttttttccttattattt 35583345  T
Q  187 aaaaaagataatggatgagagtgaatttaaatattgaaaaagtgtaac 234  Q
    |||||||||||||||||||| |||||| ||||||| ||||||||||||    
T  35583344 aaaaaagataatggatgagaatgaattcaaatattaaaaaagtgtaac 35583297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 178 - 239
Target Start/End: Original strand, 25536539 - 25536600
Alignment:
Q  178 ttatcatttaaaaaagataatggatgagagtgaatttaaatattgaaaaagtgtaacgaaca 239  Q
    ||||||||||||||||||||| |||||||||||||| ||||||| ||||| |||||| ||||    
T  25536539 ttatcatttaaaaaagataatagatgagagtgaattcaaatattaaaaaaatgtaacaaaca 25536600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 104 - 227
Target Start/End: Complemental strand, 26621104 - 26620979
Alignment:
Q  104 atataacaaatagataagagtaaattcaaata-ttcaaacaaaatgtatcctattttatatgtctgaattttt-cattatcatttaaaaaagataatgga 201  Q
    |||||||||||| |||| |||||||  ||| | || ||||||||||||    ||| ||||||||||| ||||| | ||||||||||||||||||||||||    
T  26621104 atataacaaatatataacagtaaataaaaaaaattaaaacaaaatgtaaaaaattgtatatgtctgatttttttccttatcatttaaaaaagataatgga 26621005  T
Q  202 tgagagtgaatttaaatattgaaaaa 227  Q
    | |||| ||||| ||||||| |||||    
T  26621004 taagagagaattcaaatattaaaaaa 26620979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 35 - 202
Target Start/End: Complemental strand, 38099114 - 38098946
Alignment:
Q  35 tcttttgattcttttgaactgtctttttctccttcgaaaatcatcatcatcattcaattcaaatatcatatataacaaatagataagagtaaattcaaat 134  Q
    |||||||||||||||| | || ||||||||||||  | ||| | | ||| | |||||| |||||  || |||| | ||||||||||||||||||||||||    
T  38099114 tcttttgattcttttggattgactttttctcctttcagaattaccctcaactttcaatgcaaatcacacatatgataaatagataagagtaaattcaaat 38099015  T
Q  135 attcaaacaaaatgtatcctattttatatgtctgaattttt-cattatcatttaaaaaagataatggat 202  Q
    ||| ||| |||||||| |  ||  ||||| ||  | ||||| | ||||| |||||||||||||||||||    
T  38099014 attaaaataaaatgtaacgaatcatatatatccaattttttcccttatcgtttaaaaaagataatggat 38098946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 87 - 145
Target Start/End: Complemental strand, 19289048 - 19288990
Alignment:
Q  87 ttcaattcaaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaa 145  Q
    |||||| |||||| |||||||||||||||||||||| |||||| ||||||| |||||||    
T  19289048 ttcaatacaaataacatatataacaaatagataagaataaatttaaatattaaaacaaa 19288990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 94 - 136
Target Start/End: Original strand, 16312817 - 16312859
Alignment:
Q  94 caaatatcatatataacaaatagataagagtaaattcaaatat 136  Q
    |||||| |||||||||||||||||||| |||||||||||||||    
T  16312817 caaataacatatataacaaatagataaaagtaaattcaaatat 16312859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 146
Target Start/End: Original strand, 28400189 - 28400241
Alignment:
Q  94 caaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaa 146  Q
    |||||| ||||||||||| |||||||| |||||||||||||||| ||| ||||    
T  28400189 caaataacatatataacatatagataaaagtaaattcaaatattaaaaaaaaa 28400241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 87 - 146
Target Start/End: Complemental strand, 1612228 - 1612169
Alignment:
Q  87 ttcaattcaaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaa 146  Q
    |||||| |||||| || |||||||||||||| |||| |||||||||||||| ||| ||||    
T  1612228 ttcaatacaaataacacatataacaaatagacaagattaaattcaaatattaaaataaaa 1612169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 87 - 146
Target Start/End: Original strand, 8839665 - 8839724
Alignment:
Q  87 ttcaattcaaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaa 146  Q
    |||||| |||||| || || ||||||||||||||||||||||| ||||||| ||| ||||    
T  8839665 ttcaatacaaataacacatgtaacaaatagataagagtaaatttaaatattaaaataaaa 8839724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 95 - 146
Target Start/End: Original strand, 25536460 - 25536511
Alignment:
Q  95 aaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaa 146  Q
    ||||| || |||||||||||| |||||| |||||||||||||| ||||||||    
T  25536460 aaataacacatataacaaataaataagaataaattcaaatattaaaacaaaa 25536511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 148
Target Start/End: Original strand, 1093642 - 1093696
Alignment:
Q  94 caaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaatg 148  Q
    |||||| || |||||||||||||||| ||||||||| ||||||| ||| ||||||    
T  1093642 caaataacacatataacaaatagatatgagtaaatttaaatattaaaataaaatg 1093696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 145
Target Start/End: Complemental strand, 7464339 - 7464281
Alignment:
Q  87 ttcaattcaaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaa 145  Q
    |||||| |||||| || || |||||||||||||||| |||||| ||||||| |||||||    
T  7464339 ttcaatacaaataacacatgtaacaaatagataagaataaatttaaatattaaaacaaa 7464281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 137
Target Start/End: Complemental strand, 9616545 - 9616427
Alignment:
Q  19 tataaagaaaataacatcttttgattcttttgaactgtctttttctccttcgaaaatcatcatcatcattcaattcaaatatcatatataacaaatagat 118  Q
    ||||||||||||||   |||||| ||||||||  |||  |||||||| |||  |||| | ||||| | || ||| |||||| || ||||||  |||||||    
T  9616545 tataaagaaaataatcacttttggttcttttgtgctgattttttctctttcctaaattaccatcaactttaaatacaaataacacatataatcaatagat 9616446  T
Q  119 aagagtaaattcaaatatt 137  Q
    || ||||||||||||||||    
T  9616445 aaaagtaaattcaaatatt 9616427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 137
Target Start/End: Original strand, 27174996 - 27175046
Alignment:
Q  87 ttcaattcaaatatcatatataacaaatagataagagtaaattcaaatatt 137  Q
    |||||| |||||| || ||||||||||||||||| |||||||| |||||||    
T  27174996 ttcaatacaaatagcacatataacaaatagataaaagtaaatttaaatatt 27175046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 105 - 146
Target Start/End: Original strand, 15341479 - 15341520
Alignment:
Q  105 tataacaaatagataagagtaaattcaaatattcaaacaaaa 146  Q
    ||||||||||| ||||||||||||||||||||| ||| ||||    
T  15341479 tataacaaataaataagagtaaattcaaatattaaaaaaaaa 15341520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 137
Target Start/End: Original strand, 10542847 - 10542887
Alignment:
Q  97 atatcatatataacaaatagataagagtaaattcaaatatt 137  Q
    |||||| || |||||||||||||| ||||||||||||||||    
T  10542847 atatcacatgtaacaaatagataatagtaaattcaaatatt 10542887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 87 - 221
Target Start/End: Complemental strand, 31555747 - 31555615
Alignment:
Q  87 ttcaattcaaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaatgtatcctattttatatgtctgaatttttcattatcattt 186  Q
    |||||| |||||| ||||||||||||||| ||||| ||||||||||||||| |||||||||||| |  |||  ||  ||| || |||||| |||||||||    
T  31555747 ttcaatacaaataacatatataacaaataaataagtgtaaattcaaatattaaaacaaaatgtaacaaattgaat--gtccgattttttccttatcattt 31555650  T
Q  187 aaaaaagataatggatgagagtgaatttaaatatt 221  Q
    ||||||||||||||||||||||||||| |||||||    
T  31555649 aaaaaagataatggatgagagtgaattcaaatatt 31555615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 137
Target Start/End: Original strand, 16039105 - 16039223
Alignment:
Q  19 tataaagaaaataacatcttttgattcttttgaactgtctttttctccttcgaaaatcatcatcatcattcaattcaaatatcatatataacaaatagat 118  Q
    |||| |||||||||||| ||||||||||||||  ||| ||||||  | ||| ||||| | | ||| | |||||| |||||| || ||||||||||| |||    
T  16039105 tatagagaaaataacatgttttgattcttttgggctgacttttttcctttctaaaattaccctcaactttcaatacaaataacacatataacaaattgat 16039204  T
Q  119 aagagtaaattcaaatatt 137  Q
    ||||||| |||||||||||    
T  16039205 aagagtagattcaaatatt 16039223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 146
Target Start/End: Complemental strand, 9243973 - 9243846
Alignment:
Q  19 tataaagaaaataacatcttttgattcttttgaactgtctttttctccttcgaaaatcatcatcatcattcaattcaaatatcatatataacaaatagat 118  Q
    ||||||||||||||||| |||   |||||||| | || ||||||||| ||  |||||  |||||| | |||||| ||||||  | |||||||||||||||    
T  9243973 tataaagaaaataacatgtttccgttcttttggattgactttttctcttttcaaaattgtcatcaactttcaatacaaataatacatataacaaatagat 9243874  T
Q  119 aagagtaaattcaaatattcaaacaaaa 146  Q
    || | |||||||||||||| ||| ||||    
T  9243873 aaaaataaattcaaatattaaaataaaa 9243846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 150
Target Start/End: Complemental strand, 17641087 - 17640957
Alignment:
Q  19 tataaagaaaataacatcttttgattcttttgaactgtctttttctccttcgaaaatcatcatcatcattcaattcaaatatcatatataacaaatagat 118  Q
    |||||||||||||  ||||||||  |||||||  |||  |||||||||||| || || | | ||| | | |||| |||||| ||| | |||||||||||     
T  17641087 tataaagaaaatagtatcttttgcctcttttggtctgattttttctccttccaatattaccttcaacgt-caatacaaataacatttgtaacaaatagac 17640989  T
Q  119 aagagtaaattcaaatattcaaacaaaatgta 150  Q
    ||||||||||||||||||| ||||||||||||    
T  17640988 aagagtaaattcaaatattaaaacaaaatgta 17640957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 159 - 227
Target Start/End: Original strand, 17874429 - 17874497
Alignment:
Q  159 tatatgtctgaatttttcattatcatttaaaaaagataatggatgagagtgaatttaaatattgaaaaa 227  Q
    |||||||| || |||||| |||||||||| ||||||||||||| || ||| |||| |||||||||||||    
T  17874429 tatatgtccgattttttccttatcatttagaaaagataatggaagaaagtaaattcaaatattgaaaaa 17874497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 146
Target Start/End: Original strand, 37867430 - 37867518
Alignment:
Q  58 tttttctccttcgaaaatcatcatcatcattcaattcaaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaa 146  Q
    |||||||| ||| ||||| | | ||| | ||||||  ||||| || |||||||||||| ||||||||||||||||||||  ||||||||    
T  37867430 tttttctctttccaaaattaccctcaactttcaataaaaataacacatataacaaataaataagagtaaattcaaatatcaaaacaaaa 37867518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 147
Target Start/End: Original strand, 42444398 - 42444458
Alignment:
Q  87 ttcaattcaaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaat 147  Q
    |||||| |||||| || |||||||||||| ||||||||||||| ||||||| ||| |||||    
T  42444398 ttcaatacaaatagcacatataacaaataaataagagtaaatttaaatattaaaataaaat 42444458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 87 - 150
Target Start/End: Original strand, 5879976 - 5880038
Alignment:
Q  87 ttcaattcaaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaatgta 150  Q
    |||||| |||||| ||||| |||||||||||||||| |||||| ||||||| ||| ||||||||    
T  5879976 ttcaatacaaataacatatgtaacaaatagataagaataaatttaaatatt-aaaaaaaatgta 5880038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 102 - 137
Target Start/End: Original strand, 19133173 - 19133208
Alignment:
Q  102 atatataacaaatagataagagtaaattcaaatatt 137  Q
    ||||||||||||||||||||| ||||||||||||||    
T  19133173 atatataacaaatagataagaataaattcaaatatt 19133208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 107 - 146
Target Start/End: Original strand, 27912913 - 27912952
Alignment:
Q  107 taacaaatagataagagtaaattcaaatattcaaacaaaa 146  Q
    ||||||||||||||||||||||||||||||| ||| ||||    
T  27912913 taacaaatagataagagtaaattcaaatattaaaataaaa 27912952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 95 - 146
Target Start/End: Complemental strand, 39809312 - 39809261
Alignment:
Q  95 aaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaa 146  Q
    ||||| || ||||| |||||||||||||||||||||||||||| ||| ||||    
T  39809312 aaatagcacatatatcaaatagataagagtaaattcaaatattaaaaaaaaa 39809261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 95 - 146
Target Start/End: Complemental strand, 40301848 - 40301797
Alignment:
Q  95 aaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaa 146  Q
    ||||| || |||| ||||||||||||||||||||||||||||| ||| ||||    
T  40301848 aaatagcacatatgacaaatagataagagtaaattcaaatattaaaataaaa 40301797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 87 - 150
Target Start/End: Original strand, 42651709 - 42651772
Alignment:
Q  87 ttcaattcaaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaatgta 150  Q
    ||||||||||||| ||||| |||||| || |||||| |||||| ||||||| ||| ||||||||    
T  42651709 ttcaattcaaataacatatgtaacaagtaaataagaataaatttaaatatttaaaaaaaatgta 42651772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 137
Target Start/End: Original strand, 15248974 - 15249024
Alignment:
Q  87 ttcaattcaaatatcatatataacaaatagataagagtaaattcaaatatt 137  Q
    |||||| |||||| || ||||||||||||||||||| |||||| |||||||    
T  15248974 ttcaatacaaataacacatataacaaatagataagaataaatttaaatatt 15249024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 227
Target Start/End: Original strand, 17873069 - 17873123
Alignment:
Q  173 tttcattatcatttaaaaaagataatggatgagagtgaatttaaatattgaaaaa 227  Q
    |||| ||||| |||| ||||||||||||| || |||||||||||||||| |||||    
T  17873069 tttctttatcttttagaaaagataatggaagaaagtgaatttaaatattaaaaaa 17873123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 137
Target Start/End: Original strand, 29462611 - 29462661
Alignment:
Q  87 ttcaattcaaatatcatatataacaaatagataagagtaaattcaaatatt 137  Q
    ||||||||||||| ||||| ||| |||||||||||| |||||| |||||||    
T  29462611 ttcaattcaaataacatatgtaagaaatagataagaataaatttaaatatt 29462661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 87 - 144
Target Start/End: Complemental strand, 33134963 - 33134906
Alignment:
Q  87 ttcaattcaaatatcatatataacaaatagataagagtaaattcaaatattcaaacaa 144  Q
    |||||| |||||| || ||||||||||| ||||||| |||||| ||||||| ||||||    
T  33134963 ttcaatacaaataacacatataacaaatggataagaataaatttaaatattaaaacaa 33134906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 150
Target Start/End: Complemental strand, 740950 - 740906
Alignment:
Q  106 ataacaaatagataagagtaaattcaaatattcaaacaaaatgta 150  Q
    |||||| ||||||||||||||||||||||||| ||| ||| ||||    
T  740950 ataacacatagataagagtaaattcaaatatttaaaaaaattgta 740906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 136
Target Start/End: Complemental strand, 3171679 - 3171647
Alignment:
Q  104 atataacaaatagataagagtaaattcaaatat 136  Q
    |||||||||||| ||||||||||||||||||||    
T  3171679 atataacaaataaataagagtaaattcaaatat 3171647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 146
Target Start/End: Complemental strand, 21566084 - 21566032
Alignment:
Q  94 caaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaa 146  Q
    |||||| || |||||||||||| |||| |||||||||||||||| ||| ||||    
T  21566084 caaataacacatataacaaataaataatagtaaattcaaatattaaaataaaa 21566032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 146
Target Start/End: Complemental strand, 25915429 - 25915377
Alignment:
Q  94 caaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaa 146  Q
    |||||| || |||||| |||||||||||| |||||||||||||| ||| ||||    
T  25915429 caaataacacatataataaatagataagaataaattcaaatattaaaataaaa 25915377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1017 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold1017
Description:

Target: scaffold1017; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 57 - 227
Target Start/End: Complemental strand, 2515 - 2344
Alignment:
Q  57 ctttttctccttcgaaaatcatcatcatcattcaattcaaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaatgtatcctat 156  Q
    ||||||||||||  ||||| | | |||||  ||||| |||||| || ||||||||||||||||| | ||||| |||||||| |||||||||||| |  ||    
T  2515 ctttttctcctttcaaaattaccctcatctctcaatacaaataacacatataacaaatagataaaaataaatacaaatattaaaacaaaatgtaacaaat 2416  T
Q  157 tttatatgtctga-atttttcattatcatttaaaaaagataatggatgagagtgaatttaaatattgaaaaa 227  Q
    |  ||||||| ||  |||||| ||||||||||||||||||||| ||||| |||||||| ||||||| |||||    
T  2415 tgcatatgtccgatttttttccttatcatttaaaaaagataatagatgaaagtgaattcaaatattaaaaaa 2344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 106 - 227
Target Start/End: Original strand, 6515 - 6637
Alignment:
Q  106 ataacaaatagataagagtaaattcaaatattcaaacaaaatgtatcctattttatatgtctgaatttt-tcattatcatttaaaaaagataatggatga 204  Q
    ||||||||| | |||||||||||||||||||| |||||||||||  |  | | ||||||||  | |||| ||||||||||||||||||||||||| ||||    
T  6515 ataacaaatgggtaagagtaaattcaaatattaaaacaaaatgttacgaaatgtatatgtcaaatttttttcattatcatttaaaaaagataatgcatga 6614  T
Q  205 gagtgaatttaaatattgaaaaa 227  Q
    ||||||||| ||||||| |||||    
T  6615 gagtgaattcaaatattaaaaaa 6637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 104 - 234
Target Start/End: Complemental strand, 14912301 - 14912171
Alignment:
Q  104 atataacaaatagataagagtaaattcaaatattcaaacaaaatgtatcctattttatatgtctgaatttttcattatcatttaaaaaagataatggatg 203  Q
    |||||| ||||||||||||||||||||||||||| |||||| || ||    | | ||||||||||  |||||| ||||||||  ||||||| ||||||||    
T  14912301 atataataaatagataagagtaaattcaaatattaaaacaagatataataaactgtatatgtctgtttttttccttatcattctaaaaagaaaatggatg 14912202  T
Q  204 agagtgaatttaaatattgaaaaagtgtaac 234  Q
    |||||||||| ||||||| ||||| ||||||    
T  14912201 agagtgaattcaaatattaaaaaactgtaac 14912171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 146
Target Start/End: Original strand, 23124187 - 23124314
Alignment:
Q  19 tataaagaaaataacatcttttgattcttttgaactgtctttttctccttcgaaaatcatcatcatcattcaattcaaatatcatatataacaaatagat 118  Q
    ||||||||||||||||| ||||| ||||||||   || ||||||||| ||| ||||| | | | |   |||||| |||||| || |||||||||||||||    
T  23124187 tataaagaaaataacatgttttggttcttttgggatgactttttctctttccaaaattacccttaattttcaatacaaatagcacatataacaaatagat 23124286  T
Q  119 aagagtaaattcaaatattcaaacaaaa 146  Q
    ||||||||||||||||||| ||| ||||    
T  23124287 aagagtaaattcaaatattgaaataaaa 23124314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 87 - 146
Target Start/End: Complemental strand, 13240953 - 13240894
Alignment:
Q  87 ttcaattcaaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaa 146  Q
    |||||| |||||| ||||||||||||||||||||||||||||||||||||| ||| ||||    
T  13240953 ttcaatacaaataacatatataacaaatagataagagtaaattcaaatattaaaataaaa 13240894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 58 - 227
Target Start/End: Complemental strand, 4965813 - 4965643
Alignment:
Q  58 tttttctccttcgaaaatcatcatcatcattcaattcaaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaatgtatcctatt 157  Q
    |||||||||||  ||||| | | ||| | |||||| |||||| || ||||||||||||||||| | |||| | ||||||| ||| | ||||||    |||    
T  4965813 tttttctccttttaaaattaccctcaactttcaatacaaatagcacatataacaaatagataaaactaaacttaaatattaaaatagaatgtaataaatt 4965714  T
Q  158 ttatatgtctgaatttttcattatcattt-aaaaaagataatggatgagagtgaatttaaatattgaaaaa 227  Q
     |||||||     |||||| ||||||||| ||||||||||||||||| ||||||||||||||||| |||||    
T  4965713 gtatatgttcagttttttccttatcattttaaaaaagataatggatgtgagtgaatttaaatattaaaaaa 4965643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 104 - 227
Target Start/End: Complemental strand, 19707612 - 19707486
Alignment:
Q  104 atataacaaatagataagagtaaattcaaatat----tcaaacaaaatgtatcctattttatatgtctgaatttttcattatcatttaaaaaagataatg 199  Q
    |||| ||||||||||||||||||  ||||||||    | ||||||||| || |  ||| |||||||| ||  ||||| || ||||||||||||||||||     
T  19707612 atatgacaaatagataagagtaatatcaaatatatattaaaacaaaatataacaaattatatatgtc-gatgttttccttttcatttaaaaaagataata 19707514  T
Q  200 gatgagagtgaatttaaatattgaaaaa 227  Q
    ||||||||||||||| |||||| |||||    
T  19707513 gatgagagtgaatttgaatattaaaaaa 19707486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 94 - 137
Target Start/End: Complemental strand, 26306499 - 26306456
Alignment:
Q  94 caaatatcatatataacaaatagataagagtaaattcaaatatt 137  Q
    |||||| || ||||||||||||||||||||||||||||||||||    
T  26306499 caaataacaaatataacaaatagataagagtaaattcaaatatt 26306456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 57 - 146
Target Start/End: Complemental strand, 9894685 - 9894596
Alignment:
Q  57 ctttttctccttcgaaaatcatcatcatcattcaattcaaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaa 146  Q
    ||||||||| ||| ||||| | | ||| | |||||| ||| ||||| |||||| |||||||||| |||||||||||||||| ||| ||||    
T  9894685 ctttttctctttcaaaaattaccctcaactttcaatacaactatcacatataagaaatagataaaagtaaattcaaatattaaaataaaa 9894596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 145
Target Start/End: Original strand, 2441258 - 2441314
Alignment:
Q  89 caattcaaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaa 145  Q
    |||| |||||| |||||||||||||||||||| | |||||| ||||||| |||||||    
T  2441258 caatacaaataacatatataacaaatagataataataaatttaaatattaaaacaaa 2441314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 87 - 146
Target Start/End: Original strand, 14426430 - 14426489
Alignment:
Q  87 ttcaattcaaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaa 146  Q
    |||||| |||||| || || ||||||||||||||||||||||||| ||||| ||| ||||    
T  14426430 ttcaatacaaataacacatgtaacaaatagataagagtaaattcatatattaaaataaaa 14426489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 87 - 146
Target Start/End: Original strand, 17942293 - 17942352
Alignment:
Q  87 ttcaattcaaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaa 146  Q
    |||||| |||||| || |||||| |||||||||||||| |||||||||||| ||| ||||    
T  17942293 ttcaatacaaataacaaatataataaatagataagagtgaattcaaatattaaaataaaa 17942352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 146
Target Start/End: Original strand, 17829620 - 17829672
Alignment:
Q  94 caaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaa 146  Q
    |||||| || ||||||||||||||||| | |||||||||||||| ||| ||||    
T  17829620 caaataacacatataacaaatagataaaaataaattcaaatattaaaataaaa 17829672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 93 - 137
Target Start/End: Original strand, 30591104 - 30591148
Alignment:
Q  93 tcaaatatcatatataacaaatagataagagtaaattcaaatatt 137  Q
    ||||||| || |||||||||||| |||| ||||||||||||||||    
T  30591104 tcaaataacacatataacaaataaataaaagtaaattcaaatatt 30591148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 85 - 151
Target Start/End: Complemental strand, 14771015 - 14770949
Alignment:
Q  85 cattcaattcaaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaatgtat 151  Q
    |||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  14771015 cattcaatgcaaataacatatataacaaatagataagagtaaattcaaatattaaaacaaaatgtat 14770949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 21 - 146
Target Start/End: Complemental strand, 49758715 - 49758590
Alignment:
Q  21 taaagaaaataacatcttttgattcttttgaactgtctttttctccttcgaaaatcatcatcatcattcaattcaaatatcatatataacaaatagataa 120  Q
    ||||||||||| ||| |||||| |||||||   || ||||||||  ||| ||||| ||| ||| | |||||  |||||| || |||||||||||||||||    
T  49758715 taaagaaaatagcatgttttgactcttttgggttgactttttctgtttctaaaattatcctcaactttcaaaacaaataacacatataacaaatagataa 49758616  T
Q  121 gagtaaattcaaatattcaaacaaaa 146  Q
    ||||||||||||||||| ||| ||||    
T  49758615 gagtaaattcaaatattaaaataaaa 49758590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 85 - 206
Target Start/End: Original strand, 21967207 - 21967319
Alignment:
Q  85 cattcaattcaaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaatgtatcctattttatatgtctgaatttttcattatcat 184  Q
    |||||||| |||||| || ||||||||||||||||| |||||||||||||| | |||||||||||||  ||||| || |       ||||||| ||||||    
T  21967207 cattcaatacaaataacacatataacaaatagataaaagtaaattcaaataataaaacaaaatgtat-atatttgattt-------tttttca-tatcat 21967297  T
Q  185 ttaaaaaagataatggatgaga 206  Q
    ||||||||||||||||||||||    
T  21967298 ttaaaaaagataatggatgaga 21967319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 85 - 206
Target Start/End: Original strand, 21989643 - 21989755
Alignment:
Q  85 cattcaattcaaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaatgtatcctattttatatgtctgaatttttcattatcat 184  Q
    |||||||| |||||| || ||||||||||||||||| |||||||||||||| | |||||||||||||  ||||| || |       ||||||| ||||||    
T  21989643 cattcaatacaaataacacatataacaaatagataaaagtaaattcaaataataaaacaaaatgtat-atatttgattt-------tttttca-tatcat 21989733  T
Q  185 ttaaaaaagataatggatgaga 206  Q
    ||||||||||||||||||||||    
T  21989734 ttaaaaaagataatggatgaga 21989755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 137
Target Start/End: Complemental strand, 29626137 - 29626019
Alignment:
Q  19 tataaagaaaataacatcttttgattcttttgaactgtctttttctccttcgaaaatcatcatcatcattcaattcaaatatcatatataacaaatagat 118  Q
    |||||||||||||||||  ||||| |||||||  ||| ||||||||| ||| ||||| ||| ||| | |||||| |||||| || |||||||||||| ||    
T  29626137 tataaagaaaataacatgctttgactcttttgggctgactttttctctttccaaaattatcttcaactttcaatacaaataacacatataacaaatatat 29626038  T
Q  119 aagagtaaattcaaatatt 137  Q
    || | |||| |||||||||    
T  29626037 aataataaaatcaaatatt 29626019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 112 - 227
Target Start/End: Original strand, 21082630 - 21082747
Alignment:
Q  112 aatagataagagtaaattcaaatattcaaacaaaatgtatcctattttatatgtctga---atttttcattatcatttaaaaaagataatggatgagagt 208  Q
    |||||| | ||| ||||||||||||| |||||||||||| |  ||| || || |||||   ||||||| |||| |||||||||||||||||||||| |||    
T  21082630 aatagacatgagaaaattcaaatattaaaacaaaatgtaacaaattgtacatatctgatttatttttccttattatttaaaaaagataatggatga-agt 21082728  T
Q  209 gaatttaaatattgaaaaa 227  Q
    ||||| ||||||| |||||    
T  21082729 gaattcaaatatttaaaaa 21082747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 87 - 146
Target Start/End: Original strand, 23267846 - 23267905
Alignment:
Q  87 ttcaattcaaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaa 146  Q
    |||||| |||||| || |||||||||||||||||||||||||||||||||| ||| ||||    
T  23267846 ttcaatacaaataacacatataacaaatagataagagtaaattcaaatattaaaataaaa 23267905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 58 - 227
Target Start/End: Complemental strand, 13475646 - 13475476
Alignment:
Q  58 tttttctccttcgaaaatcatcatcatcattcaattcaaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaatgtatcctatt 157  Q
    |||||||||||| ||||| |  |||| | |||||| ||||||  | |||||||||| | ||||||||||||| ||||||| ||| ||||||||    |||    
T  13475646 tttttctccttcaaaaattacaatcaactttcaatgcaaatagtacatataacaaaaa-ataagagtaaatttaaatattaaaataaaatgtaaaaaatt 13475548  T
Q  158 ttatatgtctga---atttttcattatcatttaaaaaagataatggatgagagtgaatttaaatattgaaaaa 227  Q
     ||||||||  |   ||| ||||| |||||||||||||||||||| |||||||| |||| ||||||| |||||    
T  13475547 gtatatgtcaaacatattattcat-atcatttaaaaaagataatgaatgagagtaaattcaaatattaaaaaa 13475476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 95 - 147
Target Start/End: Original strand, 21495407 - 21495459
Alignment:
Q  95 aaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaat 147  Q
    ||||| ||||| ||||||||||||||||||||||| ||||||| |||||||||    
T  21495407 aaataacatatgtaacaaatagataagagtaaatttaaatattaaaacaaaat 21495459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 87 - 146
Target Start/End: Complemental strand, 19468290 - 19468231
Alignment:
Q  87 ttcaattcaaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaa 146  Q
    |||||| |||||| || ||||||||| |||||||||||||||||||||||| ||| ||||    
T  19468290 ttcaatacaaatagcacatataacaattagataagagtaaattcaaatattaaaataaaa 19468231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 77 - 131
Target Start/End: Original strand, 49429976 - 49430030
Alignment:
Q  77 atcatcatcattcaattcaaatatcatatataacaaatagataagagtaaattca 131  Q
    ||||||| | |||| | |||||||||||||||||||||| |||||||||||||||    
T  49429976 atcatcaactttcactacaaatatcatatataacaaatacataagagtaaattca 49430030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 242
Target Start/End: Complemental strand, 14770914 - 14770866
Alignment:
Q  194 ataatggatgagagtgaatttaaatattgaaaaagtgtaacgaacacaa 242  Q
    |||||||||||||| ||||| ||||||| |||||||||||| |||||||    
T  14770914 ataatggatgagagcgaattcaaatattaaaaaagtgtaacaaacacaa 14770866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 145
Target Start/End: Original strand, 17589982 - 17590040
Alignment:
Q  87 ttcaattcaaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaa 145  Q
    |||||| |||||| ||||| ||| |||||||||||| |||||| ||||||| |||||||    
T  17589982 ttcaatacaaataacatatgtaataaatagataagaataaatttaaatattaaaacaaa 17590040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 145
Target Start/End: Complemental strand, 18875336 - 18875278
Alignment:
Q  87 ttcaattcaaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaa 145  Q
    |||||| |||||| || || |||||||||||||||| |||||| ||||||| |||||||    
T  18875336 ttcaatacaaataacacatgtaacaaatagataagaataaatttaaatattaaaacaaa 18875278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 137
Target Start/End: Original strand, 45879613 - 45879663
Alignment:
Q  87 ttcaattcaaatatcatatataacaaatagataagagtaaattcaaatatt 137  Q
    |||||| ||||||  |||||||||||||| || ||||||||||||||||||    
T  45879613 ttcaatacaaatagtatatataacaaatatattagagtaaattcaaatatt 45879663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 106 - 151
Target Start/End: Original strand, 20838039 - 20838084
Alignment:
Q  106 ataacaaatagataagagtaaattcaaatattcaaacaaaatgtat 151  Q
    |||||||||||||||||||| ||||||||||| ||| |||| ||||    
T  20838039 ataacaaatagataagagtagattcaaatatttaaaaaaaaagtat 20838084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 146
Target Start/End: Complemental strand, 7791505 - 7791453
Alignment:
Q  94 caaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaa 146  Q
    ||||||||| |||| ||||||| ||||||||||||| ||||||| ||| ||||    
T  7791505 caaatatcacatatgacaaatatataagagtaaattgaaatattaaaataaaa 7791453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 146
Target Start/End: Complemental strand, 30806119 - 30806075
Alignment:
Q  102 atatataacaaatagataagagtaaattcaaatattcaaacaaaa 146  Q
    |||||||||||||| ||||||||||||| ||||||| ||| ||||    
T  30806119 atatataacaaataaataagagtaaattaaaatattaaaataaaa 30806075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 150
Target Start/End: Original strand, 34667263 - 34667346
Alignment:
Q  66 cttcgaaaatcatcatcatcattcaattcaaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaatgta 150  Q
    |||| ||||| | ||||| | |||||| |||||| |  ||||||||||||||||| | |||||||||||||| ||| ||||||||    
T  34667263 cttccaaaattaccatcaactttcaatacaaatagcgcatataacaaatagataaaaataaattcaaatatt-aaaaaaaatgta 34667346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 88 - 191
Target Start/End: Original strand, 101338 - 101441
Alignment:
Q  88 tcaattcaaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaatgtatcctattttatatgtctgaatttttcattatcattta 187  Q
    ||||| |||||| || ||||||||||||||||| |||||||||||||||  ||| |||||||| |  ||| ||||||| ||| |||||| ||||||| ||    
T  101338 tcaatacaaataacacatataacaaatagataatagtaaattcaaatatctaaataaaatgtaacaaattatatatgtttgattttttccttatcatcta 101437  T
Q  188 aaaa 191  Q
    ||||    
T  101438 aaaa 101441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 242
Target Start/End: Original strand, 101474 - 101522
Alignment:
Q  194 ataatggatgagagtgaatttaaatattgaaaaagtgtaacgaacacaa 242  Q
    ||||| |||||||||||||| ||||||| |||||||||||  |||||||    
T  101474 ataattgatgagagtgaattcaaatattaaaaaagtgtaataaacacaa 101522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 146
Target Start/End: Complemental strand, 43435 - 43308
Alignment:
Q  19 tataaagaaaataacatcttttgattcttttgaactgtctttttctccttcgaaaatcatcatcatcattcaattcaaatatcatatataacaaatagat 118  Q
    |||||||||||||  || |||||  ||||||| |||| ||||||| | ||| ||||| | ||| | | |||||| |||||| |  |||||||||||| ||    
T  43435 tataaagaaaatagaatgttttgtctcttttgcactgactttttccctttccaaaattaccataaactttcaatgcaaataacgcatataacaaataaat 43336  T
Q  119 aagagtaaattcaaatattcaaacaaaa 146  Q
    ||||||||||||||||||| ||| ||||    
T  43335 aagagtaaattcaaatattaaaataaaa 43308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 58 - 146
Target Start/End: Complemental strand, 32897 - 32809
Alignment:
Q  58 tttttctccttcgaaaatcatcatcatcattcaattcaaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaa 146  Q
    |||| ||| ||| ||||| | ||||| | |||||| |||||| || |||||| ||||||||||||||||||||||||||| ||| ||||    
T  32897 ttttactctttctaaaattaccatcaactttcaatacaaataacacatataataaatagataagagtaaattcaaatattaaaataaaa 32809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 227
Target Start/End: Original strand, 72715 - 72759
Alignment:
Q  183 atttaaaaaagataatggatgagagtgaatttaaatattgaaaaa 227  Q
    |||| |||||||||||||||||||||||||| ||||||| |||||    
T  72715 atttgaaaaagataatggatgagagtgaattcaaatattaaaaaa 72759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0734 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0734
Description:

Target: scaffold0734; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 87 - 150
Target Start/End: Complemental strand, 4263 - 4200
Alignment:
Q  87 ttcaattcaaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaatgta 150  Q
    |||||| |||||| || ||||||||||||||||||| |||||| ||||||| ||| ||| ||||    
T  4263 ttcaatacaaataacacatataacaaatagataagaataaatttaaatattaaaataaagtgta 4200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 146
Target Start/End: Complemental strand, 57335 - 57295
Alignment:
Q  106 ataacaaatagataagagtaaattcaaatattcaaacaaaa 146  Q
    ||||||||||||||| | |||||||||||||| ||||||||    
T  57335 ataacaaatagataataataaattcaaatatttaaacaaaa 57295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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