View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16908_high_1_N (Length: 451)
Name: NF16908_high_1_N
Description: NF16908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16908_high_1_N |
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Alignment Details
Target: chr7 (Bit Score: 274; Significance: 1e-153; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 138 - 442
Target Start/End: Original strand, 29691097 - 29691401
Alignment:
| Q |
138 |
tctttgtttactagctagggtttatgatctgagatttgaaggaatgaccttgttgttagggttttaatttagtcaaaaatattgtttgaaagtaaaagaa |
237 |
Q |
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| T |
29691097 |
tctttgtttactagctagggtttatgatctgagatttgaaggaatgaccttgttgttagggttttaatttagtcaaaaatattgtttgaaagtaaaagaa |
29691196 |
T |
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| Q |
238 |
gagaagggacagaaagattaggtactttgttgtcttgtgatgagtgggtcatgtttcaccagttcaaattccaatgactcatattagaatttctcctatt |
337 |
Q |
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| T |
29691197 |
gagaagggacagaaagattaggtactttgttgtcttgtgatgagtgggtcatgtttcaccagttcaaattccaatgactcatattagaatttctcctatt |
29691296 |
T |
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| Q |
338 |
gaaatttgtttctttcaactaattaacgaaatcataatggcgttaagtaacaannnnnnnnnaggaaatggcattaaataaaatgattaccagcagtagt |
437 |
Q |
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| T |
29691297 |
gaaatttgtttctttcaactaattaacgaaatcataatggcgttaagtaacaatttttttataggaaatgacattaaataaaatgattaccagcagtagt |
29691396 |
T |
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| Q |
438 |
ataat |
442 |
Q |
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| T |
29691397 |
ataat |
29691401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 140 - 321
Target Start/End: Original strand, 29719791 - 29719973
Alignment:
| Q |
140 |
tttgtttactagctagggtttatgatctgagatttgaaggaatgaccttgttgttagggttttaatttagtcaaaaatattgtttgaaagtaaaagaaga |
239 |
Q |
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| T |
29719791 |
tttgttcactagctagggtttgtgatctgagattgaaaggaatgaccttgttcttagggttttaatttagtcaaaaaaattgtttgaaagtaaaagaaga |
29719890 |
T |
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| Q |
240 |
gaagggacagaaagattaggtactttgttgtcttgtgatgagtgggtcatgtttcacc-agttcaaattccaatgactcatat |
321 |
Q |
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| T |
29719891 |
gaagggacagaaaggttaggtactttgttgtcttgtgatgagtgggtcatgtttcacctagttcaaatcccaatgacacatat |
29719973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 29690969 - 29691003
Alignment:
| Q |
1 |
ggaagttggaaggagagaggagaggggttgaaccc |
35 |
Q |
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| T |
29690969 |
ggaagttggaaggagagaggagaggggttgaaccc |
29691003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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