View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16909_high_1 (Length: 381)

Name: NF16909_high_1
Description: NF16909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16909_high_1
NF16909_high_1
[»] chr2 (6 HSPs)
chr2 (14-381)||(35183753-35184120)
chr2 (1-314)||(35105790-35106104)
chr2 (15-341)||(35177756-35178082)
chr2 (60-299)||(35169510-35169749)
chr2 (14-296)||(35054891-35055173)
chr2 (195-301)||(35047022-35047128)
[»] chr7 (5 HSPs)
chr7 (66-329)||(25484251-25484514)
chr7 (59-303)||(25636518-25636762)
chr7 (146-299)||(25436405-25436558)
chr7 (144-296)||(25478885-25479037)
chr7 (59-304)||(25442325-25442570)
[»] chr5 (1 HSPs)
chr5 (198-320)||(500322-500444)


Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 14 - 381
Target Start/End: Original strand, 35183753 - 35184120
Alignment:
Q  14 catcataaaaaccagggaaaacagtttgtttcaatttttcatggcattcagcaatagtagccatctcttccaaacaccacgttgaatcggcatatctttg 113  Q
    |||||||||||  |||||||||||| |||||||||| |  |||  ||||||||||||| |||||||||||||||||  | ||||| || |||||  |||     
T  35183753 catcataaaaaatagggaaaacagtctgtttcaattctgtatgatattcagcaatagtggccatctcttccaaacataatgttgactccgcataattttt 35183852  T
Q  114 agagaagacaacaatagaaattcttgaactttgaattgcttgtagaagttgcggtgaaagggattctcctttctcaagcctttgatcatccttgaaggca 213  Q
    ||||||||||||||||||||| |  ||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||  ||||||||||| ||     
T  35183853 agagaagacaacaatagaaatccgagaactttgaattgcttgtagaagttgcggcgaaagggattctcctttttcaagtcttttgtcatccttgaaagcg 35183952  T
Q  214 aaaataccctttctttttagatgagcataaagatgatcaataaaagtgttgcgggtgtcagcaccacggaaactgataaacacatcatatccatagcttt 313  Q
    |||||||||||  || |||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  35183953 aaaatacccttagttgttagatgagcatgaagatgatcaacaaaagtgctgcgggtgtcagcaccacggaaactgataaacacatcatatctatagcttt 35184052  T
Q  314 ggatgctattggaatcactggaagaacctatatctccctgacccaaatggatcaaatcggaagatgtc 381  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35184053 ggatgctattggaatcactggaagaacctatatctccctgacccaaatggatcaaatcggaagatgtc 35184120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 35105790 - 35106104
Alignment:
Q  1 atgagatgga-catcatcataaaaaccagggaaaacagtttgtttcaatttttcatggcattcagcaatagtagccatctcttccaaacaccacgttgaa 99  Q
    |||||||||| || ||||||||||| ||||||||||||||||||||||| ||| | |||||||||||| |||||||||||||||||||||||| |||||     
T  35105790 atgagatggatcaacatcataaaaaacagggaaaacagtttgtttcaatcttttacggcattcagcaacagtagccatctcttccaaacaccatgttgac 35105889  T
Q  100 tcggcatatctttgagagaagacaacaatagaaattcttgaactttgaattgcttgtagaagttgcggtgaaagggattctcctttctcaagcctttgat 199  Q
    ||||||||||||| ||||||||||||||||||||  |  ||| ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  35105890 tcggcatatctttcagagaagacaacaatagaaacccgagaattttgaattgcttgaagaagttgcggcgaaagggattctcctttctcaagcctttgat 35105989  T
Q  200 catccttgaaggcaaaaataccctttctttttagatgagcataaagatgatcaataaaagtgttgcgggtgtcagcaccacggaaactgataaacacatc 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||| | ||| | ||||||||||||||| ||    
T  35105990 catccttgaaggcaaaaataccctttctttttagatgagcataaagatgatcgacaaaagtgttgcgcgtgtctggacctctgaaactgataaacacgtc 35106089  T
Q  300 atatccatagctttg 314  Q
     |||| |||||||||    
T  35106090 gtatctatagctttg 35106104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 15 - 341
Target Start/End: Original strand, 35177756 - 35178082
Alignment:
Q  15 atcataaaaaccagggaaaacagtttgtttcaatttttcatggcattcagcaatagtagccatctcttccaaacaccacgttgaatcggcatatctttga 114  Q
    |||||||||| |||||||||||||||||   || ||   | | |||||| ||||||||||||| |||||||||||||| ||||| || ||||||||||      
T  35177756 atcataaaaaacagggaaaacagtttgtaagaaattgctacgacattcaacaatagtagccatttcttccaaacaccatgttgactcagcatatctttct 35177855  T
Q  115 gagaagacaacaatagaaattcttgaactttgaattgcttgtagaagttgcggtgaaagggattctcctttctcaagcctttgatcatccttgaaggcaa 214  Q
    ||||||||||| ||||| || | |||| ||  |||||||||| |||||||| | |||||| ||||||||||||| ||||||| |||||||||||| ||||    
T  35177856 gagaagacaacgatagatatccgtgaatttgcaattgcttgtcgaagttgcagcgaaaggcattctcctttctcgagccttttatcatccttgaacgcaa 35177955  T
Q  215 aaataccctttctttttagatgagcataaagatgatcaataaaagtgttgcgggtgtcagcaccacggaaactgataaacacatcatatccatagctttg 314  Q
    ||||||| |||||| |||||||||||||||||||||||| |||||||||||||||||| | ||| | ||||||||||||||| || |||  |||||| ||    
T  35177956 aaataccttttcttgttagatgagcataaagatgatcaacaaaagtgttgcgggtgtctggacctctgaaactgataaacacgtcgtatttatagctatg 35178055  T
Q  315 gatgctattggaatcactggaagaacc 341  Q
     |  | | |||||||| ||||||||||    
T  35178056 cactccactggaatcaatggaagaacc 35178082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 60 - 299
Target Start/End: Original strand, 35169510 - 35169749
Alignment:
Q  60 ttcagcaatagtagccatctcttccaaacaccacgttgaatcggcatatctttgagagaagacaacaatagaaattcttgaactttgaattgcttgtaga 159  Q
    |||| |||| |||||||| |||||||||||||| ||||| || ||||||||||  |||||||||||||||||||| | |||| ||  |||||||||| ||    
T  35169510 ttcaacaatggtagccatttcttccaaacaccatgttgactcagcatatctttctgagaagacaacaatagaaatccgtgaatttgtaattgcttgtcga 35169609  T
Q  160 agttgcggtgaaagggattctcctttctcaagcctttgatcatccttgaaggcaaaaataccctttctttttagatgagcataaagatgatcaataaaag 259  Q
     |||||| ||||| | ||||||||||||| ||||||| ||||||||||||||| |||| |||||||||  |||||||||||||||||||||||| |||||    
T  35169610 tgttgcgttgaaaagcattctcctttctctagccttttatcatccttgaaggcgaaaacaccctttctagttagatgagcataaagatgatcaacaaaag 35169709  T
Q  260 tgttgcgggtgtcagcaccacggaaactgataaacacatc 299  Q
    |||| ||||||||||| || | ||||||||||||||||||    
T  35169710 tgttacgggtgtcagcgcctctgaaactgataaacacatc 35169749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 14 - 296
Target Start/End: Original strand, 35054891 - 35055173
Alignment:
Q  14 catcataaaaaccagggaaaacagtttgtttcaatttttcatggcattcagcaatagtagccatctcttccaaacaccacgttgaatcggcatatctttg 113  Q
    |||||||||||  ||||||||| |||||||| || |  |||   || |||||||| | ||||||||||||||||||||| ||||| ||||||||| |||     
T  35054891 catcataaaaaatagggaaaactgtttgtttgaaatactcacaacaatcagcaattgcagccatctcttccaaacaccaagttgattcggcatatgtttt 35054990  T
Q  114 agagaagacaacaatagaaattcttgaactttgaattgcttgtagaagttgcggtgaaagggattctcctttctcaagcctttgatcatccttgaaggca 213  Q
    |||||||||||||||| ||||||  ||| || |||||||||||||||| ||||||||||   |||||||||||||||| ||||  |||||||||||||||    
T  35054991 agagaagacaacaataaaaattcgcgaatttcgaattgcttgtagaagctgcggtgaaataaattctcctttctcaagacttttgtcatccttgaaggca 35055090  T
Q  214 aaaataccctttctttttagatgagcataaagatgatcaataaaagtgttgcgggtgtcagcaccacggaaactgataaacac 296  Q
    |||||||| |||||| |||||||||||||||||||||||| |||| | ||||| ||||||| ||| |  |||||||| |||||    
T  35055091 aaaataccttttcttgttagatgagcataaagatgatcaacaaaactattgcgagtgtcaggacctctaaaactgatgaacac 35055173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 195 - 301
Target Start/End: Original strand, 35047022 - 35047128
Alignment:
Q  195 ttgatcatccttgaaggcaaaaataccctttctttttagatgagcataaagatgatcaataaaagtgttgcgggtgtcagcaccacggaaactgataaac 294  Q
    |||||||||||||||| || | ||||| |||||  | ||||||  ||| |||||||| || ||||||||||| ||||| |  || | |||||||||||||    
T  35047022 ttgatcatccttgaagacagagataccttttctgatgagatgatgatagagatgatcgatgaaagtgttgcgagtgtcggtgcctctgaaactgataaac 35047121  T
Q  295 acatcat 301  Q
    |||||||    
T  35047122 acatcat 35047128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 7e-31; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 66 - 329
Target Start/End: Complemental strand, 25484514 - 25484251
Alignment:
Q  66 aatagtagccatctcttccaaacaccacgttgaatcggcata-tctttgagagaagacaacaatagaaattcttgaactttgaattgcttgtagaagttg 164  Q
    ||||| |||||| || ||||||||||| ||||||   ||||| |||||| ||||| ||||| |||||||| | |||   |||||||||||||||||||||    
T  25484514 aatagcagccatttcatccaaacaccatgttgaagaagcataatctttg-gagaaaacaacgatagaaatgcgtgactgttgaattgcttgtagaagttg 25484416  T
Q  165 cggtgaaagggattctcctttctcaagcctttgatcatccttgaaggcaaaaataccctttctttttagatgagcataaagatgatcaataaaagtgttg 264  Q
     ||||||| || |||||||||||  |||   |  |||||||||||||  |||||||| ||||| || |||||||| || ||||| |||| ||| |  ||     
T  25484415 gggtgaaatggcttctcctttctgtagctgcttgtcatccttgaaggtgaaaataccttttctattgagatgagcgtagagatggtcaacaaaggaatta 25484316  T
Q  265 cgggtgtcagcaccacggaaactgataaacacatcatatccatagctttggatgctattggaatc 329  Q
    |||||||||| ||| | ||||||||| |||||||| |||| |||||||||| ||||||| |||||    
T  25484315 cgggtgtcagaacctctgaaactgatgaacacatcgtatctatagctttggttgctattagaatc 25484251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 59 - 303
Target Start/End: Complemental strand, 25636762 - 25636518
Alignment:
Q  59 attcagcaatagtagccatctcttccaaacaccacgttgaatcggcata-tctttgagagaagacaacaatagaaattcttgaactttgaattgcttgta 157  Q
    ||||| |||||| |||||| || ||||||||||| |||||    ||||| |||||| ||||||||||  |||||||  |  |||  || |||||| || |    
T  25636762 attcatcaatagcagccatttcatccaaacaccatgttgatgaagcataatctttg-gagaagacaatgatagaaacccgcgaatctttaattgcctgca 25636664  T
Q  158 gaagttgcggtgaaagggattctcctttctcaagcctttgatcatccttgaaggcaaaaataccctttctttttagatgagcataaagatgatcaataaa 257  Q
     ||||||  |||||| |||||| ||||||| ||||  ||  |||||||||||||   ||||||| |||||  | ||||||||||| ||||| |||| |||    
T  25636663 aaagttggagtgaaatggattcgcctttctgaagcgatttgtcatccttgaaggtcgaaataccttttctagtgagatgagcatagagatggtcaacaaa 25636564  T
Q  258 agtgttgcgggtgtcagcaccacggaaactgataaacacatcatat 303  Q
     |||||||||||||||| ||| | |||||||||||| |||||||||    
T  25636563 ggtgttgcgggtgtcaggacctctgaaactgataaatacatcatat 25636518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 146 - 299
Target Start/End: Original strand, 25436405 - 25436558
Alignment:
Q  146 gaattgcttgtagaagttgcggtgaaagggattctcctttctcaagcctttgatcatccttgaaggcaaaaataccctttctttttagatgagcataaag 245  Q
    ||||||||||||||||||| ||||||| || ||||||||| |  |||   |  ||||||||||||| ||||||||| |||||   ||||||||  |  ||    
T  25436405 gaattgcttgtagaagttggggtgaaatggcttctcctttttggagctgcttgtcatccttgaaggtaaaaataccttttctaactagatgagagtggag 25436504  T
Q  246 atgatcaataaaagtgttgcgggtgtcagcaccacggaaactgataaacacatc 299  Q
    |||||||| |||||  |||||||| |||| ||| |  |||||||| ||||||||    
T  25436505 atgatcaacaaaagaattgcgggtctcagaacctctaaaactgatgaacacatc 25436558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 296
Target Start/End: Original strand, 25478885 - 25479037
Alignment:
Q  144 ttgaattgcttgtagaagttgcggtgaaagggattctcctttctcaagcctttgatcatccttgaaggcaaaaataccctttctttttagatgagcataa 243  Q
    ||||||||| ||| |||||||  |||||| |||||| |||||||| |||   || |||||| |||| |  |||||||| |||||  | |||||||||||     
T  25478885 ttgaattgcctgtcgaagttggagtgaaatggattcccctttctcgagctgctggtcatccatgaacgtgaaaataccttttctagtgagatgagcatag 25478984  T
Q  244 agatgatcaataaaagtgttgcgggtgtcagcaccacggaaactgataaacac 296  Q
    ||||| |||  ||| || || |||||||||  ||| | |||||||||||||||    
T  25478985 agatggtcagcaaaggttttacgggtgtcaatacctctgaaactgataaacac 25479037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 304
Target Start/End: Complemental strand, 25442570 - 25442325
Alignment:
Q  59 attcagcaatagtagccatctcttccaaacaccacgttgaatcggcata-tctttgagagaagacaacaatagaaattcttgaactttgaattgcttgta 157  Q
    ||||| |||||| |||||| || ||||||||||| |||||    ||||| |||||| ||||||||||  |||||||  |  |||  || |||||| || |    
T  25442570 attcatcaatagcagccatttcatccaaacaccatgttgatgaagcataatctttg-gagaagacaatgatagaaacccgcgaatctttaattgcctgca 25442472  T
Q  158 gaagttgcggtgaaagggattctcctttctcaagcctttgatcatccttgaaggcaaaaataccctttctttttagatgagcataaagatgatcaataaa 257  Q
     ||||||  |||||| |||||| ||||||| ||||  ||  |||||||||||| | |||||||| |||||  | |||||| | || ||||| |||| |||    
T  25442471 aaagttggagtgaaatggattcgcctttctgaagcgatttgtcatccttgaagacgaaaataccttttctagtgagatgatcgtagagatggtcaacaaa 25442372  T
Q  258 agtgttgcgggtgtcagcaccacggaaactgataaacacatcatatc 304  Q
     |  ||||||||||||| ||| |  |||||||| |||||||| ||||    
T  25442371 ggaattgcgggtgtcaggacctctaaaactgatgaacacatcgtatc 25442325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 198 - 320
Target Start/End: Original strand, 500322 - 500444
Alignment:
Q  198 atcatccttgaaggcaaaaataccctttctttttagatgagcataaagatgatcaataaaagtgttgcgggtgtcagcaccacggaaactgataaacaca 297  Q
    ||||||||| ||||  |||||||| |||||  | ||||||||||| |||||||||| |||||||||||| ||||| | ||| | ||||||||||||||||    
T  500322 atcatccttaaaggtgaaaataccttttctaatgagatgagcatagagatgatcaacaaaagtgttgcgtgtgtcggaacctctgaaactgataaacaca 500421  T
Q  298 tcatatccatagctttggatgct 320  Q
    ||||||| |||||||||||||||    
T  500422 tcatatctatagctttggatgct 500444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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