View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16909_high_4 (Length: 238)

Name: NF16909_high_4
Description: NF16909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16909_high_4
NF16909_high_4
[»] chr4 (8 HSPs)
chr4 (1-238)||(24520726-24520957)
chr4 (100-184)||(32347600-32347683)
chr4 (52-151)||(11859990-11860088)
chr4 (120-184)||(25170244-25170308)
chr4 (117-182)||(26905396-26905461)
chr4 (52-209)||(6681714-6681871)
chr4 (120-182)||(28964834-28964897)
chr4 (117-151)||(7043412-7043446)
[»] chr8 (6 HSPs)
chr8 (51-189)||(11615505-11615643)
chr8 (117-184)||(9487824-9487891)
chr8 (122-184)||(6414657-6414718)
chr8 (121-182)||(25479871-25479932)
chr8 (170-223)||(44812333-44812386)
chr8 (55-127)||(44812411-44812482)
[»] chr5 (3 HSPs)
chr5 (96-184)||(17156603-17156691)
chr5 (117-182)||(31000701-31000767)
chr5 (117-184)||(38550105-38550174)
[»] scaffold0019 (1 HSPs)
scaffold0019 (117-182)||(59512-59577)
[»] chr7 (1 HSPs)
chr7 (96-216)||(30380627-30380749)
[»] chr2 (3 HSPs)
chr2 (118-179)||(38099204-38099265)
chr2 (117-182)||(40498004-40498069)
chr2 (147-216)||(30801860-30801927)
[»] chr6 (2 HSPs)
chr6 (96-184)||(11186853-11186943)
chr6 (117-182)||(29010860-29010926)
[»] chr1 (1 HSPs)
chr1 (117-182)||(51119484-51119550)
[»] chr3 (1 HSPs)
chr3 (158-209)||(25810119-25810171)


Alignment Details
Target: chr4 (Bit Score: 181; Significance: 6e-98; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 24520957 - 24520726
Alignment:
Q  1 aatttctttggacaagttactttcaccccaatcactttaatatgtggatcatattagatattaatcaataactgcatttgtaactaacttttatataagt 100  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||       |||||||| ||||||||||||||||||||| ||||||    
T  24520957 aatttctttggacgagttactttcaccccaatcactttaatatgtggatcatatta-------atcaataaatgcatttgtaactaacttttagataagt 24520865  T
Q  101 ttgttttaaaattctattagttagttagatagcttgttctacaagcaagtgatattgtgcctataaaaggctttgtattgtgaatctcattacaaatgaa 200  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  24520864 ttgttttaaaattctattagttagttagacagcttgttctacaagcaagtgatattgtgcctataaaaggctttgtattgtgaaactcattacaaatgaa 24520765  T
Q  201 taaaattcatattgcattcaat-attctctctattcttt 238  Q
    ||||| |||||||||||||||| ||||||||||||||||    
T  24520764 taaaagtcatattgcattcaataattctctctattcttt 24520726  T

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Target: chr4; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 100 - 184
Target Start/End: Complemental strand, 32347683 - 32347600
Alignment:
Q  100 tttgttttaaaattctattagttagttagatagcttgttctacaagcaagtgatattgtgcctataaaaggctttgtattgtgaa 184  Q
    ||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32347683 tttgtttcaaaatt-tgttagttagttagatagcttgttctacaagcaagtgatattgtgcctataaaaggctttgtattgtgaa 32347600  T

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Target: chr4; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 52 - 151
Target Start/End: Complemental strand, 11860088 - 11859990
Alignment:
Q  52 tattagatattaatcaataactgcatttgtaactaacttttatataagtttgttttaaaattctattagttagttagatagcttgttctacaagcaagtg 151  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||| ||||||||| ||||||||||||  ||||||| |||||||||||    
T  11860088 tattagatattaatcaataactgcatttgtaactaacttttagataggtttg-tttcaaattctatgagttagttagattacttgttccacaagcaagtg 11859990  T

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Target: chr4; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 120 - 184
Target Start/End: Original strand, 25170244 - 25170308
Alignment:
Q  120 gttagttagatagcttgttctacaagcaagtgatattgtgcctataaaaggctttgtattgtgaa 184  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25170244 gttagttagatagattgttctacaagcaagtgatattgtgcctataaaaggctttgtattgtgaa 25170308  T

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Target: chr4; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 117 - 182
Target Start/End: Original strand, 26905396 - 26905461
Alignment:
Q  117 ttagttagttagatagcttgttctacaagcaagtgatattgtgcctataaaaggctttgtattgtg 182  Q
    ||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||||||    
T  26905396 ttagttagttagatagcttgttctaaaagcaagtgctattatgcctataaaaggctttgtattgtg 26905461  T

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Target: chr4; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 52 - 209
Target Start/End: Complemental strand, 6681871 - 6681714
Alignment:
Q  52 tattagatattaatcaataactgca-tttgtaactaacttttatataagtttgttttaaaattctattagttagttagatagcttgttctacaagcaagt 150  Q
    ||||||||||||||||||||||||| ||||||||| | ||||| ||||||||| ||||||   || | ||||||||| ||  |||| || ||||||||||    
T  6681871 tattagatattaatcaataactgcactttgtaactgatttttagataagtttgctttaaa---ctctgagttagttatattacttgctccacaagcaagt 6681775  T
Q  151 -gatattgtgcctata-aaaggctttgtattgtgaatctcattacaaatgaataaaattca 209  Q
     | |  |||||||||| ||||||||||||||||||| ||||| || ||||||||| |||||    
T  6681774 ggcttgtgtgcctatataaaggctttgtattgtgaaactcataactaatgaataacattca 6681714  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 182
Target Start/End: Complemental strand, 28964897 - 28964834
Alignment:
Q  120 gttagttagatagcttgttctacaagcaagtgatat-tgtgcctataaaaggctttgtattgtg 182  Q
    |||||||||||||||||| ||||||||||||| | | | ||| |||||||||||||||| ||||    
T  28964897 gttagttagatagcttgtactacaagcaagtgttgtatttgcttataaaaggctttgtaatgtg 28964834  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 151
Target Start/End: Complemental strand, 7043446 - 7043412
Alignment:
Q  117 ttagttagttagatagcttgttctacaagcaagtg 151  Q
    ||||||||||||||||||||| |||||||||||||    
T  7043446 ttagttagttagatagcttgtgctacaagcaagtg 7043412  T

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Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 51 - 189
Target Start/End: Complemental strand, 11615643 - 11615505
Alignment:
Q  51 atattagatattaatcaataactgcatttgtaactaacttttatataagtttgttttaaaattctattagttagttagatagcttgttctacaagcaagt 150  Q
    |||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |||||||| ||||||||||||| ||||| |  ||||||||||    
T  11615643 atattagatattaatcaataactgcatttgtaactaacttctagataagtttgtttt-aaattcta-tagttagttagattgcttgctacacaagcaagt 11615546  T
Q  151 ga-tattgtgcctata-aaaggctttgtattgtgaatctca 189  Q
    || |  |||||||||| ||||||||||||||||||| ||||    
T  11615545 gacttgtgtgcctatataaaggctttgtattgtgaaactca 11615505  T

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Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 117 - 184
Target Start/End: Original strand, 9487824 - 9487891
Alignment:
Q  117 ttagttagttagatagcttgttctacaagcaagtgatattgtgcctataaaaggctttgtattgtgaa 184  Q
    |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  9487824 ttagttagttagatagcttgttctacaagcaagtaatattgtgtctataaaaggctttgtattgtgaa 9487891  T

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Target: chr8; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 122 - 184
Target Start/End: Original strand, 6414657 - 6414718
Alignment:
Q  122 tagttagatagcttgttctacaagcaagtgatattgtgcctataaaaggctttgtattgtgaa 184  Q
    |||||||||||||||||||| ||||||||| |||||||||||| |||||||||||||||||||    
T  6414657 tagttagatagcttgttctataagcaagtgttattgtgcctat-aaaggctttgtattgtgaa 6414718  T

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Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 121 - 182
Target Start/End: Original strand, 25479871 - 25479932
Alignment:
Q  121 ttagttagatagcttgttctacaagcaagtgatattgtgcctataaaaggctttgtattgtg 182  Q
    ||||||| |||||||||| |||||||||||| |||||||| |||||||| ||||||||||||    
T  25479871 ttagttaaatagcttgttatacaagcaagtgctattgtgcttataaaagactttgtattgtg 25479932  T

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Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 170 - 223
Target Start/End: Complemental strand, 44812386 - 44812333
Alignment:
Q  170 gctttgtattgtgaatctcattacaaatgaataaaattcatattgcattcaata 223  Q
    ||||||||||||||| ||||| |||||||||| ||||||||||||||| |||||    
T  44812386 gctttgtattgtgaaactcataacaaatgaatgaaattcatattgcatacaata 44812333  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 55 - 127
Target Start/End: Complemental strand, 44812482 - 44812411
Alignment:
Q  55 tagatattaatcaataactgcatt-tgtaactaacttttatataagtttgttttaaaattctattagttagtta 127  Q
    |||||||||||||| ||||||||| ||||||| | ||||| ||||||||||||| ||| ||||| |||||||||    
T  44812482 tagatattaatcaaaaactgcattctgtaact-atttttagataagtttgtttt-aaactctatgagttagtta 44812411  T

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Target: chr5 (Bit Score: 57; Significance: 6e-24; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 96 - 184
Target Start/End: Complemental strand, 17156691 - 17156603
Alignment:
Q  96 taagtttgttttaaaattctattagttagttagatagcttgttctacaagcaagtgatattgtgcctataaaaggctttgtattgtgaa 184  Q
    ||||||||||| |||| | |  || |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  17156691 taagtttgtttcaaaaatttgctacttagttagatagtttgttctacaagcaagtgctattgtgcctataaaaggctttgtattgtgaa 17156603  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 117 - 182
Target Start/End: Original strand, 31000701 - 31000767
Alignment:
Q  117 ttagttagttagatagcttgttctacaagcaagtgatattg-tgcctataaaaggctttgtattgtg 182  Q
    |||||| ||||| |||||||||||||||||||||| ||||| ||||||||||| |||||||||||||    
T  31000701 ttagttggttagctagcttgttctacaagcaagtgctattgatgcctataaaaagctttgtattgtg 31000767  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 117 - 184
Target Start/End: Complemental strand, 38550174 - 38550105
Alignment:
Q  117 ttagttagttagatagcttgttctacaagcaagtg--atattgtgcctataaaaggctttgtattgtgaa 184  Q
    |||||||||| ||||||||||||||||| ||||||  || |||| ||||||||||| |||||||||||||    
T  38550174 ttagttagttggatagcttgttctacaaccaagtgctattttgtccctataaaaggttttgtattgtgaa 38550105  T

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Target: scaffold0019 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 117 - 182
Target Start/End: Complemental strand, 59577 - 59512
Alignment:
Q  117 ttagttagttagatagcttgttctacaagcaagtgatattgtgcctataaaaggctttgtattgtg 182  Q
    ||||||||||| |||||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  59577 ttagttagttaaatagcttgttctacaagcaagtgccattgtgcctataaaaggctttgtattgtg 59512  T

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Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 96 - 216
Target Start/End: Original strand, 30380627 - 30380749
Alignment:
Q  96 taagtttgttttaaaattctattagttagttagatagcttgttctacaagcaagtga---tattgtgcctataaaaggctttgtattgtgaatctcatta 192  Q
    ||||||||||| ||||| |||||||||||||||||  ||||||| |||||  |||||   | ||||||||||| |||||||||||||||||| |||||||    
T  30380627 taagtttgtttcaaaat-ctattagttagttagattacttgttccacaagtgagtgacttttttgtgcctatataaggctttgtattgtgaaactcatta 30380725  T
Q  193 caaatgaataaaattcatattgca 216  Q
    | ||||||||| ||||| ||||||    
T  30380726 ctaatgaataagattcacattgca 30380749  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 118 - 179
Target Start/End: Complemental strand, 38099265 - 38099204
Alignment:
Q  118 tagttagttagatagcttgttctacaagcaagtgatattgtgcctataaaaggctttgtatt 179  Q
    |||||||||||||| |||||||||||| |||||  ||||||||||||||| |||||||||||    
T  38099265 tagttagttagataacttgttctacaaacaagttctattgtgcctataaacggctttgtatt 38099204  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 117 - 182
Target Start/End: Original strand, 40498004 - 40498069
Alignment:
Q  117 ttagttagttagatagcttgttctacaagcaagtgatattgtgcctataaaaggctttgtattgtg 182  Q
    |||||| ||||||| |||||||||||  ||||||| |||||||| |||||||||||||||||||||    
T  40498004 ttagtttgttagattgcttgttctaccggcaagtgctattgtgcatataaaaggctttgtattgtg 40498069  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 147 - 216
Target Start/End: Complemental strand, 30801927 - 30801860
Alignment:
Q  147 aagtgatattgtgcctataaaaggctttgtattgtgaatctcattacaaatgaataaaattcatattgca 216  Q
    ||||||||||||||||||||||||| |||||||||||| ||  | | || ||||| ||||||||||||||    
T  30801927 aagtgatattgtgcctataaaaggccttgtattgtgaaact--tcaaaactgaatgaaattcatattgca 30801860  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 96 - 184
Target Start/End: Complemental strand, 11186943 - 11186853
Alignment:
Q  96 taagtttgttttaaaattctattagttagttagatagcttgttctacaagcaagtga---tattgtgcctataaaaggctttgtattgtgaa 184  Q
    ||||||||||| ||||| ||| |||||||| ||||  |||| |||||||||||||||   | ||||||||||| ||||||||||||||||||    
T  11186943 taagtttgtttcaaaat-ctaatagttagtgagattacttgctctacaagcaagtgactcttttgtgcctatataaggctttgtattgtgaa 11186853  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 182
Target Start/End: Complemental strand, 29010926 - 29010860
Alignment:
Q  117 ttagttagttagatagcttgttctacaagcaag--tgatattgtgcctataaaaggctttgtattgtg 182  Q
    ||||||||| ||||||||||| |||||||||||  | ||||| |||||||||||||||||||| ||||    
T  29010926 ttagttagtgagatagcttgtgctacaagcaagcatcatatt-tgcctataaaaggctttgtaatgtg 29010860  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 117 - 182
Target Start/End: Original strand, 51119484 - 51119550
Alignment:
Q  117 ttagttagttagatagcttgttctacaagcaagtgatat-tgtgcctataaaaggctttgtattgtg 182  Q
    ||||||||||||||||||||| ||||||| ||||| ||| | ||| |||||||||||||||| ||||    
T  51119484 ttagttagttagatagcttgtgctacaagtaagtgttatatttgcatataaaaggctttgtaatgtg 51119550  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 209
Target Start/End: Original strand, 25810119 - 25810171
Alignment:
Q  158 tgcctataaaaggctttgt-attgtgaatctcattacaaatgaataaaattca 209  Q
    ||||||||||||||||||| |||||||| ||||| || ||||||||| |||||    
T  25810119 tgcctataaaaggctttgtaattgtgaacctcataactaatgaataatattca 25810171  T

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