View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16909_high_7 (Length: 221)

Name: NF16909_high_7
Description: NF16909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16909_high_7
NF16909_high_7
[»] chr5 (10 HSPs)
chr5 (1-215)||(22488666-22488880)
chr5 (1-215)||(4635442-4635656)
chr5 (1-215)||(24412307-24412522)
chr5 (1-215)||(30445323-30445538)
chr5 (1-215)||(30454695-30454910)
chr5 (1-215)||(30459753-30459968)
chr5 (1-194)||(18568538-18568732)
chr5 (1-215)||(24421767-24421971)
chr5 (13-204)||(24278813-24279004)
chr5 (13-204)||(24383210-24383401)
[»] chr6 (3 HSPs)
chr6 (1-215)||(23896110-23896325)
chr6 (1-215)||(18420031-18420246)
chr6 (2-116)||(14101770-14101884)
[»] chr4 (8 HSPs)
chr4 (1-215)||(15843391-15843605)
chr4 (1-215)||(37058566-37058781)
chr4 (1-215)||(3242781-3242996)
chr4 (1-215)||(3917545-3917760)
chr4 (1-215)||(26811987-26812202)
chr4 (1-215)||(26821454-26821669)
chr4 (1-215)||(54690407-54690622)
chr4 (1-215)||(54699838-54700053)
[»] scaffold0040 (2 HSPs)
scaffold0040 (1-215)||(31301-31516)
scaffold0040 (1-206)||(9535-9740)
[»] chr7 (4 HSPs)
chr7 (1-215)||(4118918-4119133)
chr7 (1-215)||(15172798-15173013)
chr7 (1-215)||(7592485-7592700)
chr7 (1-215)||(15202224-15202439)
[»] scaffold0482 (1 HSPs)
scaffold0482 (1-215)||(3012-3227)
[»] chr8 (1 HSPs)
chr8 (1-215)||(7789572-7789787)
[»] scaffold0233 (1 HSPs)
scaffold0233 (1-215)||(26598-26812)
[»] scaffold0028 (2 HSPs)
scaffold0028 (1-215)||(94925-95140)
scaffold0028 (1-215)||(104366-104581)
[»] chr3 (7 HSPs)
chr3 (1-215)||(28352215-28352430)
chr3 (1-215)||(38529631-38529846)
chr3 (11-215)||(28368157-28368362)
chr3 (11-215)||(28375975-28376180)
chr3 (11-215)||(28383797-28384002)
chr3 (1-136)||(4951155-4951290)
chr3 (2-116)||(7784651-7784764)
[»] scaffold0001 (1 HSPs)
scaffold0001 (1-215)||(412777-412992)
[»] chr2 (3 HSPs)
chr2 (1-215)||(31710959-31711162)
chr2 (1-195)||(24023235-24023429)
chr2 (1-215)||(14272537-14272750)
[»] chr1 (2 HSPs)
chr1 (1-203)||(15810474-15810676)
chr1 (2-130)||(41000872-41001003)


Alignment Details
Target: chr5 (Bit Score: 159; Significance: 8e-85; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 22488880 - 22488666
Alignment:
Q  1 tcttggtgatcaagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattgatttctcttttcttctttaaaatagccagaac 100  Q
    |||||||||||||||||||||||| |||||||||||  ||||| ||||| |||||||||| || ||||||||||||||||||||||||||||||||||||    
T  22488880 tcttggtgatcaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagccagaac 22488781  T
Q  101 gttctcagaatgttctttctgatttgcctggctttgaaagcattgttgcttgcttgcgcatgagataaccagttgtagtgagctgtataacttgttgccc 200  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||| |||||||||||||||| ||||     
T  22488780 gttctcagaatgttctttctgatttgcctggctttgaaagcactgttgcttgcttgcacatgagataaccagctgtaatgagctgtataacttgctgcct 22488681  T
Q  201 aatgttgatgatgtc 215  Q
    |||| ||||||||||    
T  22488680 aatgctgatgatgtc 22488666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 4635656 - 4635442
Alignment:
Q  1 tcttggtgatcaagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattgatttctcttttcttctttaaaatagccagaac 100  Q
    |||||||||||||||||||||||| |||||||||| | ||||| |||||||||||||||| || |||||||| ||||||||||||||||||||| ||||     
T  4635656 tcttggtgatcaagggagaaaatagagctgttggatgcgtttttgatagttgtccaaagtctcaattgatttttcttttcttctttaaaatagctagaat 4635557  T
Q  101 gttctcagaatgttctttctgatttgcctggctttgaaagcattgttgcttgcttgcgcatgagataaccagttgtagtgagctgtataacttgttgccc 200  Q
    ||||||| |||||||||||||||||||||||||||||||||| | |||||||||||||| ||||| ||||||||||| |||| ||||||||||||||| |    
T  4635556 gttctcaaaatgttctttctgatttgcctggctttgaaagcactattgcttgcttgcgcgtgagagaaccagttgtaatgagttgtataacttgttgcgc 4635457  T
Q  201 aatgttgatgatgtc 215  Q
    | || ||||||||||    
T  4635456 actgctgatgatgtc 4635442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 24412522 - 24412307
Alignment:
Q  1 tcttggtgatcaagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattgatttctcttttcttctttaaaatagccagaac 100  Q
    ||||||||| |||||||||||||| |||||||||||  ||||| ||||| |||||||||| || ||||||||||||||||||||||||||||||||||||    
T  24412522 tcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagccagaac 24412423  T
Q  101 gttctcagaatgttctttctgatttgcctggctttgaaagcattgttgc-ttgcttgcgcatgagataaccagttgtagtgagctgtataacttgttgcc 199  Q
    |||||||||||||||||||||||||||||| ||| ||||||| |||||| ||||||||||||||||||||||| |||  ||||||||||||||||  |||    
T  24412422 gttctcagaatgttctttctgatttgcctgacttagaaagcactgttgctttgcttgcgcatgagataaccagctgtgatgagctgtataacttgcagcc 24412323  T
Q  200 caatgttgatgatgtc 215  Q
    || |  ||||||||||    
T  24412322 cacttctgatgatgtc 24412307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 30445323 - 30445538
Alignment:
Q  1 tcttggtgatcaagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattgatttctcttttcttctttaaaatagccagaac 100  Q
    ||||||||| |||||||||||||| |||||||||||  ||||| ||||| |||||||||| ||  |||||||||||||||||||| ||||||||||||||    
T  30445323 tcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcatttgatttctcttttcttcttaaaaatagccagaac 30445422  T
Q  101 gttctcagaatgttctttctgatttgcctggctttgaaagcattgttgc-ttgcttgcgcatgagataaccagttgtagtgagctgtataacttgttgcc 199  Q
    |||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||| |||| ||||||||||||||||  |||    
T  30445423 gttctcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagctgtataacttgcagcc 30445522  T
Q  200 caatgttgatgatgtc 215  Q
    || |  ||||||||||    
T  30445523 cacttctgatgatgtc 30445538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 30454695 - 30454910
Alignment:
Q  1 tcttggtgatcaagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattgatttctcttttcttctttaaaatagccagaac 100  Q
    ||||||||| |||||||||||||| |||||||||||  ||||| ||||| |||||||||| ||  |||||||||||||||||||| ||||||||||||||    
T  30454695 tcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcatttgatttctcttttcttcttaaaaatagccagaac 30454794  T
Q  101 gttctcagaatgttctttctgatttgcctggctttgaaagcattgttgc-ttgcttgcgcatgagataaccagttgtagtgagctgtataacttgttgcc 199  Q
    |||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||| |||| ||||||||||||||||  |||    
T  30454795 gttctcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagctgtataacttgcagcc 30454894  T
Q  200 caatgttgatgatgtc 215  Q
    || |  ||||||||||    
T  30454895 cacttctgatgatgtc 30454910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 30459753 - 30459968
Alignment:
Q  1 tcttggtgatcaagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattgatttctcttttcttctttaaaatagccagaac 100  Q
    ||||||||| |||||||||||||| |||||||||||  ||||| ||||| |||||||||| ||  |||||||||||||||||||| ||||||||||||||    
T  30459753 tcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcatttgatttctcttttcttcttaaaaatagccagaac 30459852  T
Q  101 gttctcagaatgttctttctgatttgcctggctttgaaagcattgttgc-ttgcttgcgcatgagataaccagttgtagtgagctgtataacttgttgcc 199  Q
    |||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||| |||| ||||||||||||||||  |||    
T  30459853 gttctcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagctgtataacttgcagcc 30459952  T
Q  200 caatgttgatgatgtc 215  Q
    || |  ||||||||||    
T  30459953 cacttctgatgatgtc 30459968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 18568732 - 18568538
Alignment:
Q  1 tcttggtgatcaagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattgatttctcttttcttctttaaaatagccagaac 100  Q
    ||||||||| |||||||||||||| |||||||||||  ||||| ||||| |||||||||| ||  |||||||||||||||||||| ||||||||||||||    
T  18568732 tcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcatttgatttctcttttcttcttaaaaatagccagaac 18568633  T
Q  101 gttctcagaatgttctttctgatttgcctggctttgaaagcattgttgc-ttgcttgcgcatgagataaccagttgtagtgagctgtataacttg 194  Q
    |||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||| |||| |||||||| |||||||    
T  18568632 gttctcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagctgtgtaacttg 18568538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 24421971 - 24421767
Alignment:
Q  1 tcttggtgatcaagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattgatttctcttttcttctttaaaatagccagaac 100  Q
    ||||||||| |||||||||||||| ||||| |||||  ||||| ||||| |||||||||| || |||||||||||||||||||||||||||||||         
T  24421971 tcttggtgaccaagggagaaaatagagctgctggacacgtttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagcc----- 24421877  T
Q  101 gttctcagaatgttctttctgatttgcctggctttgaaagcattgttgc-ttgcttgcgcatgagataaccagttgtagtgagctgtataacttgttgcc 199  Q
          |||||||||||||||||||||||| ||| ||||||| |||||| ||||||||||||||||||||||| |||  ||||||||||||||||  |||    
T  24421876 ------agaatgttctttctgatttgcctgacttagaaagcactgttgctttgcttgcgcatgagataaccagctgtgatgagctgtataacttgcagcc 24421783  T
Q  200 caatgttgatgatgtc 215  Q
    || |  ||||||||||    
T  24421782 cacttctgatgatgtc 24421767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 13 - 204
Target Start/End: Original strand, 24278813 - 24279004
Alignment:
Q  13 agggagaaaatatagctgttggacgtgtttta-gatagttgtccaaagtttctattgatttctcttttcttctttaaaa-tagccagaacgttctcagaa 110  Q
    |||||||||||| || ||||||||  |||||  ||||| |||||||| | ||  ||||||||||| ||||||||||||| ||||||||||||||||| ||    
T  24278813 agggagaaaatagagttgttggacacgttttttgatagctgtccaaaatctcagttgatttctctcttcttctttaaaaatagccagaacgttctca-aa 24278911  T
Q  111 tgttctttctgatttgcctggctttgaaagcattgttgcttgcttgcgcatgagataaccagttgtagtgagctgtataacttgttgcccaatg 204  Q
    |||| | ||||||||||||  |||||   ||||||||||||||||| ||||||||  |||||||||| ||| |||| | |||||||||||||||    
T  24278912 tgttgtgtctgatttgcctaactttgcttgcattgttgcttgcttgtgcatgagagtaccagttgtaatgaactgt-ttacttgttgcccaatg 24279004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 13 - 204
Target Start/End: Complemental strand, 24383401 - 24383210
Alignment:
Q  13 agggagaaaatatagctgttggacgtgtttta-gatagttgtccaaagtttctattgatttctcttttcttctttaaaa-tagccagaacgttctcagaa 110  Q
    |||||||||||| || ||||||||  |||||  ||||| |||||||| | ||  ||||||||||| ||||||||||||| ||||||||||||||||| ||    
T  24383401 agggagaaaatagagttgttggacacgttttttgatagctgtccaaaatctcagttgatttctctcttcttctttaaaaatagccagaacgttctca-aa 24383303  T
Q  111 tgttctttctgatttgcctggctttgaaagcattgttgcttgcttgcgcatgagataaccagttgtagtgagctgtataacttgttgcccaatg 204  Q
    |||| | ||||||||||||  |||||   ||||||||||||||||| ||||||||  |||||||||| ||| |||| | |||||||||||||||    
T  24383302 tgttgtgtctgatttgcctaactttgcttgcattgttgcttgcttgtgcatgagagtaccagttgtaatgaactgt-ttacttgttgcccaatg 24383210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 156; Significance: 5e-83; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 23896110 - 23896325
Alignment:
Q  1 tcttggtgatcaagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattgatttctcttttcttctttaaaatagccagaac 100  Q
    |||||||||||||||||||||||| |||||||||||  ||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||||||    
T  23896110 tcttggtgatcaagggagaaaatagagctgttggacacgtttttgatagttgtccaaagtctcaattgatttctcttttcttctttaaaatagccagaac 23896209  T
Q  101 gttctcagaatgttctttctgatttgcctggctttgaaagcattgttgc-ttgcttgcgcatgagataaccagttgtagtgagctgtataacttgttgcc 199  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |||| |||||||||||||||| ||||    
T  23896210 gttctcagaatgttctttctgatttgcctggctttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagctgtataacttgctgcc 23896309  T
Q  200 caatgttgatgatgtc 215  Q
    || |  ||||||||||    
T  23896310 cacttctgatgatgtc 23896325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 18420246 - 18420031
Alignment:
Q  1 tcttggtgatcaagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattgatttctcttttcttctttaaaatagccagaac 100  Q
    ||||||||| |||||||||||||| |||||||||||  ||||| ||||| |||||||||| || ||||||||||||||||||||||||||||||||||||    
T  18420246 tcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagccagaac 18420147  T
Q  101 gttctcagaatgttctttctgatttgcctggctttgaaagcattgttgc-ttgcttgcgcatgagataaccagttgtagtgagctgtataacttgttgcc 199  Q
    |||||||||||||||||||||||||||||| ||| ||||||| |||||| ||||||||||||||||||||||| |||  ||||||||||||||||  |||    
T  18420146 gttctcagaatgttctttctgatttgcctgacttagaaagcactgttgctttgcttgcgcatgagataaccagctgtgatgagctgtataacttgcagcc 18420047  T
Q  200 caatgttgatgatgtc 215  Q
    || |  ||||||||||    
T  18420046 cacttctgatgatgtc 18420031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 2 - 116
Target Start/End: Complemental strand, 14101884 - 14101770
Alignment:
Q  2 cttggtgatcaagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattgatttctcttttcttctttaaaatagccagaacg 101  Q
    ||||||||||||| | ||||||| || |||||||   ||||| |  || ||||||||| ||| ||||||||| ||||||||| ||||||  |  ||||||    
T  14101884 cttggtgatcaagagtgaaaatagagttgttggatacgtttttggcagctgtccaaagcttcaattgatttcacttttcttcattaaaacgggaagaacg 14101785  T
Q  102 ttctcagaatgttct 116  Q
    |||||||||||||||    
T  14101784 ttctcagaatgttct 14101770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 147; Significance: 1e-77; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 15843391 - 15843605
Alignment:
Q  1 tcttggtgatcaagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattgatttctcttttcttctttaaaatagccagaac 100  Q
    |||||||||||||||||||||||| |||||||||||  |||||  |||| ||| |||||| || |||||||||||||||||||||||||||||||| |||    
T  15843391 tcttggtgatcaagggagaaaatagagctgttggacacgttttttatagctgttcaaagtctcaattgatttctcttttcttctttaaaatagccataac 15843490  T
Q  101 gttctcagaatgttctttctgatttgcctggctttgaaagcattgttgcttgcttgcgcatgagataaccagttgtagtgagctgtataacttgttgccc 200  Q
    ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||| ||| |||||    
T  15843491 gttctcataatgttctttctgatttgcctggctttgaaagcactgttgcttgcttgcgcatgagataaccagctgtaatgagctgtataatttgctgccc 15843590  T
Q  201 aatgttgatgatgtc 215  Q
    |||| ||||||||||    
T  15843591 aatgctgatgatgtc 15843605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 37058781 - 37058566
Alignment:
Q  1 tcttggtgatcaagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattgatttctcttttcttctttaaaatagccagaac 100  Q
    |||||||||||||||||||||||| || ||||||||  ||||| ||||| |||||||||| || ||||||||||||||||||||||||||||||||||||    
T  37058781 tcttggtgatcaagggagaaaatagagttgttggacacgtttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagccagaac 37058682  T
Q  101 gttctcagaatgttctttctgatttgcctggctttgaaagcattgttg-cttgcttgcgcatgagataaccagttgtagtgagctgtataacttgttgcc 199  Q
    ||||||| |||||||||||||||||||||||||||||||||| |||||  ||||||||||||||||||||||| |||| |||||||||||||||  ||||    
T  37058681 gttctcaaaatgttctttctgatttgcctggctttgaaagcactgttgttttgcttgcgcatgagataaccagctgtaatgagctgtataactttgtgcc 37058582  T
Q  200 caatgttgatgatgtc 215  Q
    || |  ||||||||||    
T  37058581 cacttctgatgatgtc 37058566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 3242781 - 3242996
Alignment:
Q  1 tcttggtgatcaagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattgatttctcttttcttctttaaaatagccagaac 100  Q
    ||||||||| |||||||||||||| |||||||||||  ||||| ||||| |||||||||| || ||||||||||||||||||||||||||||||||||||    
T  3242781 tcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagccagaac 3242880  T
Q  101 gttctcagaatgttctttctgatttgcctggctttgaaagcattgttgc-ttgcttgcgcatgagataaccagttgtagtgagctgtataacttgttgcc 199  Q
    |||||||||||||||||||||||||||||| ||| ||||||| |||||| ||||||||||||||||||||||| |||  ||||||||||||||||  |||    
T  3242881 gttctcagaatgttctttctgatttgcctgacttagaaagcactgttgctttgcttgcgcatgagataaccagctgtgatgagctgtataacttgcagcc 3242980  T
Q  200 caatgttgatgatgtc 215  Q
    || |  ||||||||||    
T  3242981 cacttctgatgatgtc 3242996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 3917760 - 3917545
Alignment:
Q  1 tcttggtgatcaagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattgatttctcttttcttctttaaaatagccagaac 100  Q
    ||||||||| |||||||||||||| |||||||||||  ||||| ||||| |||||||||| || ||||||||||||||||||||||||||||||||||||    
T  3917760 tcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagccagaac 3917661  T
Q  101 gttctcagaatgttctttctgatttgcctggctttgaaagcattgttgc-ttgcttgcgcatgagataaccagttgtagtgagctgtataacttgttgcc 199  Q
    |||||||||||||||||||||||||||||| ||| ||||||| |||||| ||||||||||||||||||||||| |||  ||||||||||||||||  |||    
T  3917660 gttctcagaatgttctttctgatttgcctgacttagaaagcactgttgctttgcttgcgcatgagataaccagctgtgatgagctgtataacttgcagcc 3917561  T
Q  200 caatgttgatgatgtc 215  Q
    || |  ||||||||||    
T  3917560 cacttctgatgatgtc 3917545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 26812202 - 26811987
Alignment:
Q  1 tcttggtgatcaagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattgatttctcttttcttctttaaaatagccagaac 100  Q
    ||||||||| |||||||||||||| |||||||||||  ||||| ||||| |||||||||| || ||||||||||||||||||||||||||||||||||||    
T  26812202 tcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagccagaac 26812103  T
Q  101 gttctcagaatgttctttctgatttgcctggctttgaaagcattgttgc-ttgcttgcgcatgagataaccagttgtagtgagctgtataacttgttgcc 199  Q
    |||||||||||||||||||||||||||||| ||| ||||||| |||||| ||||||||||||||||||||||| |||  ||||||||||||||||  |||    
T  26812102 gttctcagaatgttctttctgatttgcctgacttagaaagcactgttgctttgcttgcgcatgagataaccagctgtgatgagctgtataacttgcagcc 26812003  T
Q  200 caatgttgatgatgtc 215  Q
    || |  ||||||||||    
T  26812002 cacttctgatgatgtc 26811987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 26821669 - 26821454
Alignment:
Q  1 tcttggtgatcaagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattgatttctcttttcttctttaaaatagccagaac 100  Q
    ||||||||| |||||||||||||| |||||||||||  ||||| ||||| |||||||||| || ||||||||||||||||||||||||||||||||||||    
T  26821669 tcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagccagaac 26821570  T
Q  101 gttctcagaatgttctttctgatttgcctggctttgaaagcattgttgc-ttgcttgcgcatgagataaccagttgtagtgagctgtataacttgttgcc 199  Q
    |||||||||||||||||||||||||||||| ||| ||||||| |||||| ||||||||||||||||||||||| |||  ||||||||||||||||  |||    
T  26821569 gttctcagaatgttctttctgatttgcctgacttagaaagcactgttgctttgcttgcgcatgagataaccagctgtgatgagctgtataacttgcagcc 26821470  T
Q  200 caatgttgatgatgtc 215  Q
    || |  ||||||||||    
T  26821469 cacttctgatgatgtc 26821454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 54690407 - 54690622
Alignment:
Q  1 tcttggtgatcaagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattgatttctcttttcttctttaaaatagccagaac 100  Q
    ||||||||| |||||||||||||| |||||||||||  ||||| ||||| |||||||||| || ||||||||||||||||||||||||||||||||||||    
T  54690407 tcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagccagaac 54690506  T
Q  101 gttctcagaatgttctttctgatttgcctggctttgaaagcattgttgc-ttgcttgcgcatgagataaccagttgtagtgagctgtataacttgttgcc 199  Q
    |||||||||||||||||||||||||||||| ||| ||||||| |||||| ||||||||||||||||||||||| |||  ||||||||||||||||  |||    
T  54690507 gttctcagaatgttctttctgatttgcctgacttagaaagcactgttgctttgcttgcgcatgagataaccagctgtgatgagctgtataacttgcagcc 54690606  T
Q  200 caatgttgatgatgtc 215  Q
    || |  ||||||||||    
T  54690607 cacttctgatgatgtc 54690622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 54699838 - 54700053
Alignment:
Q  1 tcttggtgatcaagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattgatttctcttttcttctttaaaatagccagaac 100  Q
    ||||||||| |||||||||||||| |||||||||||  ||||| ||||| |||||||||| || ||||||||||||||||||||||||||||||||||||    
T  54699838 tcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagccagaac 54699937  T
Q  101 gttctcagaatgttctttctgatttgcctggctttgaaagcattgttgc-ttgcttgcgcatgagataaccagttgtagtgagctgtataacttgttgcc 199  Q
    |||||||||||||||||||||||||||||| ||| ||||||| |||||| ||||||||||||||||||||||| |||  ||||||||||||||||  |||    
T  54699938 gttctcagaatgttctttctgatttgcctgacttagaaagcactgttgctttgcttgcgcatgagataaccagctgtgatgagctgtataacttgcagcc 54700037  T
Q  200 caatgttgatgatgtc 215  Q
    || |  ||||||||||    
T  54700038 cacttctgatgatgtc 54700053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 144; Significance: 7e-76; HSPs: 2)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 31301 - 31516
Alignment:
Q  1 tcttggtgatcaagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattgatttctcttttcttctttaaaatagccagaac 100  Q
    ||||||||| |||||||||||||| |||||||||||  ||||| ||||| |||||||||| || ||||||||||||||||||||||||||||||||||||    
T  31301 tcttggtgaacaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagccagaac 31400  T
Q  101 gttctcagaatgttctttctgatttgcctggctttgaaagcattgttgc-ttgcttgcgcatgagataaccagttgtagtgagctgtataacttgttgcc 199  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||| |||| |||||||||||||||| ||||    
T  31401 gttctcagaatgttctttctgatttgcctggctttgaaagcactgttgctttgcttgcacatgagataaccagctgtaatgagctgtataacttgctgcc 31500  T
Q  200 caatgttgatgatgtc 215  Q
    || |  ||||||||||    
T  31501 cacttctgatgatgtc 31516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 9740 - 9535
Alignment:
Q  1 tcttggtgatcaagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattgatttctcttttcttctttaaaatagccagaac 100  Q
    |||||||||||||||| ||||||| || || |||||   |||| ||||| |||||||||| ||  ||| |||| ||||||||||| |||||||| |||||    
T  9740 tcttggtgatcaagggtgaaaatagagttgatggacacatttttgatagctgtccaaagtctcatttgttttcacttttcttcttaaaaatagctagaac 9641  T
Q  101 gttctcagaatgttctttctgatttgcctggctttgaaagcattgttgcttgcttgcgcatgagataaccagttgtagtgagctgtataacttgttgccc 200  Q
    |||||||||||||||| |||||||||||| ||||||   ||  |||||||||||||||  ||| | |||||| | || |||| ||| ||| ||||||| |    
T  9640 gttctcagaatgttctgtctgatttgcctagctttgcttgctctgttgcttgcttgcgagtgaaagaaccagctataatgagttgtttaaattgttgctc 9541  T
Q  201 aatgtt 206  Q
    ||||||    
T  9540 aatgtt 9535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 144; Significance: 7e-76; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 4118918 - 4119133
Alignment:
Q  1 tcttggtgatcaagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattgatttctcttttcttctttaaaatagccagaac 100  Q
    |||||||||||||||||||||||| |||||||||||  ||||| ||||| |||||||||| || |||||||||||||||||||||||||||||||| |||    
T  4118918 tcttggtgatcaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagccaaaac 4119017  T
Q  101 gttctcagaatgttctttctgatttgcctggctttgaaagcattgttgc-ttgcttgcgcatgagataaccagttgtagtgagctgtataacttgttgcc 199  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| | || ||||||||||||||||||||     
T  4119018 gttctcagaatgttctttctgatttgcctggctttgaaagcactgttgctttgcttgcgcatgagataaccagctttaatgagctgtataacttgttgct 4119117  T
Q  200 caatgttgatgatgtc 215  Q
    || |  ||||||||||    
T  4119118 cacttctgatgatgtc 4119133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 15173013 - 15172798
Alignment:
Q  1 tcttggtgatcaagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattgatttctcttttcttctttaaaatagccagaac 100  Q
    |||||||||||||||||||||||| |||||||||||  ||||| ||||| |||||||||| || ||||||||||||||||||||||||||||||||||||    
T  15173013 tcttggtgatcaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagccagaac 15172914  T
Q  101 gttctcagaatgttctttctgatttgcctggctttgaaagcattgttgc-ttgcttgcgcatgagataaccagttgtagtgagctgtataacttgttgcc 199  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| | || |||||||||||||||| |||     
T  15172913 gttctcagaatgttctttctgatttgcctggctttgaaagcactgttgctttgcttgcgcatgagataaccagctataatgagctgtataacttgctgct 15172814  T
Q  200 caatgttgatgatgtc 215  Q
    || |  ||||||||||    
T  15172813 cacttctgatgatgtc 15172798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 7592700 - 7592485
Alignment:
Q  1 tcttggtgatcaagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattgatttctcttttcttctttaaaatagccagaac 100  Q
    ||||||||| |||||||||||||| |||||||||||  ||||| ||||| |||||||||| || ||||||||||||||||||||||||||||||||||||    
T  7592700 tcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagccagaac 7592601  T
Q  101 gttctcagaatgttctttctgatttgcctggctttgaaagcattgttgc-ttgcttgcgcatgagataaccagttgtagtgagctgtataacttgttgcc 199  Q
    |||||||||||||||||||||||||||||| ||| ||||||| |||||| ||||||||||||||||||||||| |||  ||||||||||||||||  |||    
T  7592600 gttctcagaatgttctttctgatttgcctgacttagaaagcactgttgctttgcttgcgcatgagataaccagctgtgatgagctgtataacttgcagcc 7592501  T
Q  200 caatgttgatgatgtc 215  Q
    || |  ||||||||||    
T  7592500 cacttctgatgatgtc 7592485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 15202439 - 15202224
Alignment:
Q  1 tcttggtgatcaagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattgatttctcttttcttctttaaaatagccagaac 100  Q
    |||||||||||||||||||||||| || ||||||||  ||||| ||||| |||||||||| || ||||||||||||||||||||||||||||||||||||    
T  15202439 tcttggtgatcaagggagaaaatagagttgttggacacgtttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagccagaac 15202340  T
Q  101 gttctcagaatgttctttctgatttgcctggctttgaaagcattgttgc-ttgcttgcgcatgagataaccagttgtagtgagctgtataacttgttgcc 199  Q
    |||||  ||||||||||||||||||| |||||||| |||||| |||||| ||||||||||||||||||||||| |||| |||| ||||||||||| ||||    
T  15202339 gttctatgaatgttctttctgatttgtctggctttaaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagttgtataacttgctgcc 15202240  T
Q  200 caatgttgatgatgtc 215  Q
    || |  ||||||||||    
T  15202239 cacttctgatgatgtc 15202224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0482 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: scaffold0482
Description:

Target: scaffold0482; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 3227 - 3012
Alignment:
Q  1 tcttggtgatcaagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattgatttctcttttcttctttaaaatagccagaac 100  Q
    ||||||||| |||||||||||||| |||||||||||  ||||| ||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  3227 tcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtatcttttgatttctcttttcttctttaaaatagccagaac 3128  T
Q  101 gttctcagaatgttctttctgatttgcctggctttgaaagcattgttgc-ttgcttgcgcatgagataaccagttgtagtgagctgtataacttgttgcc 199  Q
    |||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||| |||| ||||||||||||||||  |||    
T  3127 gttctcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagctgtataacttgcagcc 3028  T
Q  200 caatgttgatgatgtc 215  Q
    || |  ||||||||||    
T  3027 cacttctgatgatgtc 3012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 7789572 - 7789787
Alignment:
Q  1 tcttggtgatcaagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattgatttctcttttcttctttaaaatagccagaac 100  Q
    ||||||||| |||||||||||||| |||||||||||  ||||| ||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  7789572 tcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtatcttttgatttctcttttcttctttaaaatagccagaac 7789671  T
Q  101 gttctcagaatgttctttctgatttgcctggctttgaaagcattgttgc-ttgcttgcgcatgagataaccagttgtagtgagctgtataacttgttgcc 199  Q
    |||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||| |||| ||||||||||||||||  |||    
T  7789672 gttctcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagctgtataacttgcagcc 7789771  T
Q  200 caatgttgatgatgtc 215  Q
    || |  ||||||||||    
T  7789772 cacttctgatgatgtc 7789787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0233 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: scaffold0233
Description:

Target: scaffold0233; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 26598 - 26812
Alignment:
Q  1 tcttggtgatcaagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattgatttctcttttcttctttaaaatagccagaac 100  Q
    |||||||||||||||||||||||| || ||||||||   |||| ||||| | |||||||| || ||||||||||||||||||||||||||||||||||||    
T  26598 tcttggtgatcaagggagaaaatagagatgttggacacatttttgatagctatccaaagtctcaattgatttctcttttcttctttaaaatagccagaac 26697  T
Q  101 gttctcagaatgttctttctgatttgcctggctttgaaagcattgttgcttgcttgcgcatgagataaccagttgtagtgagctgtataacttgttgccc 200  Q
    |||||||||||||||||||||||||| ||||||||||||||| |||||||||  |||||||||| ||| ||| |||| |||||||||||||||| |||||    
T  26698 gttctcagaatgttctttctgatttgtctggctttgaaagcactgttgcttgtatgcgcatgagttaatcagctgtaatgagctgtataacttgctgccc 26797  T
Q  201 aatgttgatgatgtc 215  Q
    |||| ||||||||||    
T  26798 aatgctgatgatgtc 26812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 94925 - 95140
Alignment:
Q  1 tcttggtgatcaagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattgatttctcttttcttctttaaaatagccagaac 100  Q
    ||||||||| |||||||||||||| |||||||||||  ||||| ||||| |||||||||| || ||||||||||||||||||||||||||||||||||||    
T  94925 tcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagccagaac 95024  T
Q  101 gttctcagaatgttctttctgatttgcctggctttgaaagcattgttgc-ttgcttgcgcatgagataaccagttgtagtgagctgtataacttgttgcc 199  Q
    |||||||||||||||||||||||||||||| ||| ||||||| |||||| ||||||||||||||||||||||| |||  ||||||||||||||||  |||    
T  95025 gttctcagaatgttctttctgatttgcctgacttagaaagcactgttgctttgcttgcgcatgagataaccagctgtgatgagctgtataacttgcagcc 95124  T
Q  200 caatgttgatgatgtc 215  Q
    || |  ||||||||||    
T  95125 cacttctgatgatgtc 95140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 104366 - 104581
Alignment:
Q  1 tcttggtgatcaagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattgatttctcttttcttctttaaaatagccagaac 100  Q
    ||||||||| |||||||||||||| |||||||||||  ||||| ||||| |||||||||| || ||||||||||||||||||||||||||||||||||||    
T  104366 tcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagccagaac 104465  T
Q  101 gttctcagaatgttctttctgatttgcctggctttgaaagcattgttgc-ttgcttgcgcatgagataaccagttgtagtgagctgtataacttgttgcc 199  Q
    |||||||||||||||||||||||||||||| ||| ||||||| |||||| ||||||||||||||||||||||| |||  ||||||||||||||||  |||    
T  104466 gttctcagaatgttctttctgatttgcctgacttagaaagcactgttgctttgcttgcgcatgagataaccagctgtgatgagctgtataacttgcagcc 104565  T
Q  200 caatgttgatgatgtc 215  Q
    || |  ||||||||||    
T  104566 cacttctgatgatgtc 104581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 128; Significance: 2e-66; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 28352215 - 28352430
Alignment:
Q  1 tcttggtgatcaagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattgatttctcttttcttctttaaaatagccagaac 100  Q
    ||||||||| |||||||||||||| |||||||||||  ||||| ||||| |||||||||| || ||||||||||||||||||||||||||||||||||||    
T  28352215 tcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagccagaac 28352314  T
Q  101 gttctcagaatgttctttctgatttgcctggctttgaaagcattgttgc-ttgcttgcgcatgagataaccagttgtagtgagctgtataacttgttgcc 199  Q
    |||||||||||||||||||||||||||||| ||| ||||||| |||||| ||||||||||||||||||||||| |||  |||| |||||||||||  |||    
T  28352315 gttctcagaatgttctttctgatttgcctgacttagaaagcactgttgctttgcttgcgcatgagataaccagctgtgatgagttgtataacttgcagcc 28352414  T
Q  200 caatgttgatgatgtc 215  Q
    || |  ||||||||||    
T  28352415 cacttctgatgatgtc 28352430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 38529631 - 38529846
Alignment:
Q  1 tcttggtgatcaagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattgatttctctttt-cttctttaaaatagccagaa 99  Q
    |||||||||||||||||||||||| || ||||||||  |||||  ||||||||||||||| || |||||||||| |||| |||||||||||||||||||     
T  38529631 tcttggtgatcaagggagaaaatagagttgttggacacgttttttatagttgtccaaagtctcaattgatttctttttttcttctttaaaatagccagac 38529730  T
Q  100 cgttctcagaatgttctttctgatttgcctggctttgaaagcattgttgcttgcttgcgcatgagataaccagttgtagtgagctgtataacttgttgcc 199  Q
    ||||||||||||||||||||||| ||| ||| ||||||||||| |||||||||||||||| ||||| |||||| |||| |||| ||| ||||||||||||    
T  38529731 cgttctcagaatgttctttctgaattgtctgactttgaaagcactgttgcttgcttgcgcgtgagagaaccagctgtaatgagttgtttaacttgttgcc 38529830  T
Q  200 caatgttgatgatgtc 215  Q
    ||||||||||||||||    
T  38529831 caatgttgatgatgtc 38529846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 11 - 215
Target Start/End: Original strand, 28368157 - 28368362
Alignment:
Q  11 caagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattgatttctcttttcttctttaaaatagccagaacgttctcagaa 110  Q
    |||||||||||||| |||||||||||  ||||| ||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||    
T  28368157 caagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagccagaacgttctcagaa 28368256  T
Q  111 tgttctttctgatttgcctggctttgaaagcattgttgc-ttgcttgcgcatgagataaccagttgtagtgagctgtataacttgttgcccaatgttgat 209  Q
    |||||||||||||||||||| ||| ||||||| |||||| ||||||||||||||||||||||| |||  ||||||||||||||||  ||||| |  ||||    
T  28368257 tgttctttctgatttgcctgacttagaaagcactgttgctttgcttgcgcatgagataaccagctgtgatgagctgtataacttgcagcccacttctgat 28368356  T
Q  210 gatgtc 215  Q
    ||||||    
T  28368357 gatgtc 28368362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 11 - 215
Target Start/End: Original strand, 28375975 - 28376180
Alignment:
Q  11 caagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattgatttctcttttcttctttaaaatagccagaacgttctcagaa 110  Q
    |||||||||||||| |||||||||||  ||||| ||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||    
T  28375975 caagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagccagaacgttctcagaa 28376074  T
Q  111 tgttctttctgatttgcctggctttgaaagcattgttgc-ttgcttgcgcatgagataaccagttgtagtgagctgtataacttgttgcccaatgttgat 209  Q
    |||||||||||||||||||| ||| ||||||| |||||| ||||||||||||||||||||||| |||  ||||||||||||||||  ||||| |  ||||    
T  28376075 tgttctttctgatttgcctgacttagaaagcactgttgctttgcttgcgcatgagataaccagctgtgatgagctgtataacttgcagcccacttctgat 28376174  T
Q  210 gatgtc 215  Q
    ||||||    
T  28376175 gatgtc 28376180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 11 - 215
Target Start/End: Original strand, 28383797 - 28384002
Alignment:
Q  11 caagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattgatttctcttttcttctttaaaatagccagaacgttctcagaa 110  Q
    |||||||||||||| |||||||||||  ||||| ||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||    
T  28383797 caagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagccagaacgttctcagaa 28383896  T
Q  111 tgttctttctgatttgcctggctttgaaagcattgttgc-ttgcttgcgcatgagataaccagttgtagtgagctgtataacttgttgcccaatgttgat 209  Q
    |||||||||||||||||||| ||| ||||||| |||||| ||||||||||||||||||||||| |||  ||||||||||||||||  ||||| |  ||||    
T  28383897 tgttctttctgatttgcctgacttagaaagcactgttgctttgcttgcgcatgagataaccagctgtgatgagctgtataacttgcagcccacttctgat 28383996  T
Q  210 gatgtc 215  Q
    ||||||    
T  28383997 gatgtc 28384002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 4951290 - 4951155
Alignment:
Q  1 tcttggtgatcaagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattgatttctcttttcttctttaaaatagccagaac 100  Q
    ||||||||||||||||||||| || || ||||||||  ||||| ||||  |||| ||||| || ||||||||||||||||||||| |||||||  |||||    
T  4951290 tcttggtgatcaagggagaaactagagttgttggacacgtttttgataactgtctaaagtctcaattgatttctcttttcttcttaaaaataggaagaac 4951191  T
Q  101 gttctcagaatgttctttctgatttgcctggctttg 136  Q
    ||||||| |||||| | |||||||||| | ||||||    
T  4951190 gttctcataatgttatgtctgatttgcatagctttg 4951155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 116
Target Start/End: Original strand, 7784651 - 7784764
Alignment:
Q  2 cttggtgatcaagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattgatttctcttttcttctttaaaatagccagaacg 101  Q
    ||||||||||||| | |||||||  | |||||||| |||||| |  || | ||||||| ||| ||||||||| |||||||||||| ||| || ||||| |    
T  7784651 cttggtgatcaagagtgaaaatagtgttgttggacatgtttttggcagctttccaaagcttcaattgatttcacttttcttcttt-aaacagacagaatg 7784749  T
Q  102 ttctcagaatgttct 116  Q
    |||| ||||||||||    
T  7784750 ttcttagaatgttct 7784764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 124; Significance: 6e-64; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 412992 - 412777
Alignment:
Q  1 tcttggtgatcaagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattgatttctcttttcttctttaaaatagccagaac 100  Q
    |||||||||||||||||||||||| || ||||||||   |||| ||||| |||||||||| || ||||||||||||||||||||||||||||||||||||    
T  412992 tcttggtgatcaagggagaaaatagagttgttggactcttttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagccagaac 412893  T
Q  101 gttctcagaatgttctttctgatttgcctggctttgaaagcattgttgc-ttgcttgcgcatgagataaccagttgtagtgagctgtataacttgttgcc 199  Q
    ||||||| |||||||||||||||||| ||| ||||||||||| | |||| |||||||| |||||||||||||| |||| |||||||||||||||| ||||    
T  412892 gttctcataatgttctttctgatttgtctgactttgaaagcactattgctttgcttgcacatgagataaccagctgtaatgagctgtataacttgctgcc 412793  T
Q  200 caatgttgatgatgtc 215  Q
    || |  ||||||||||    
T  412792 cacttctgatgatgtc 412777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 121; Significance: 4e-62; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 31710959 - 31711162
Alignment:
Q  1 tcttggtgatcaagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattgatttctcttttcttctttaaaatagccagaac 100  Q
    |||||||||||||| ||||||||| || ||||||||| ||||| |||||||||||||||| || ||||||||||||||||||||| ||||||||||||      
T  31710959 tcttggtgatcaagtgagaaaatagagttgttggacgcgtttttgatagttgtccaaagtctcaattgatttctcttttcttcttaaaaatagccaga-- 31711056  T
Q  101 gttctcagaatgttctttctgatttgcctggctttgaaagcattgttgcttgcttgcgcatgagataaccagttgtagtgagctgtataacttgttgccc 200  Q
             |||||||||||||||| |||||||||||||||| |||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||    
T  31711057 ---------atgttctttctgattttcctggctttgaaagcactgttgcttgcttgcgcgtgagagaaccagttgtaatgagctgtataacttgttgccc 31711147  T
Q  201 aatgttgatgatgtc 215  Q
    |||| ||||||||||    
T  31711148 aatgctgatgatgtc 31711162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 24023235 - 24023429
Alignment:
Q  1 tcttggtgatcaagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattgatttctcttttcttctttaaaatagccagaac 100  Q
    |||| ||||||||||||||||||| || ||||||||  ||||| ||||| | |||||||| || ||||||||||||||||||||||||||||||||||||    
T  24023235 tcttagtgatcaagggagaaaatagagttgttggacacgtttttgatagctatccaaagtctcaattgatttctcttttcttctttaaaatagccagaac 24023334  T
Q  101 gttctcagaatgttctttctgatttgcctggctttgaaagcattgttgcttgcttgcgcatgagataaccagttgtagtgagctgtataacttgt 195  Q
    ||||| |||||||||| ||||| ||||||  ||||||||||| |||||||| ||||||| ||||| |||||  |||| |||||||| ||||||||    
T  24023335 gttcttagaatgttctgtctgaattgccttactttgaaagcactgttgctttcttgcgcgtgagagaaccaactgtaatgagctgtttaacttgt 24023429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 14272750 - 14272537
Alignment:
Q  1 tcttggtgatcaagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattgatttctcttttcttctttaaaatagccagaac 100  Q
    |||||||||||||||||||||||| || ||||||||  ||||| ||||| |||||||||| || ||||||||||||||||| |||  |||||||||||||    
T  14272750 tcttggtgatcaagggagaaaatagagttgttggacacgtttttgatagctgtccaaagtctcaattgatttctcttttctacttataaatagccagaac 14272651  T
Q  101 gttctcagaatgttctttctgatttgcctggctttgaaagcattgttgcttgcttgcgcatgagataaccagttgtagtgagctgtataacttgttgccc 200  Q
    ||| |||||||||||| ||||| ||||||  |||||||||||||||||||||||||||   | || |||||  |||| |||| ||| | |||||||||||    
T  14272650 gttttcagaatgttctgtctgaattgcctaactttgaaagcattgttgcttgcttgcgagggggagaaccaactgtaatgagttgt-ttacttgttgccc 14272552  T
Q  201 aatgttgatgatgtc 215  Q
    ||||||||| |||||    
T  14272551 aatgttgattatgtc 14272537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 9e-23; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 15810474 - 15810676
Alignment:
Q  1 tcttggtgatcaagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattgatttctcttttcttctttaaaatagccagaac 100  Q
    ||||||||||||| || | ||||| || ||||||||   |||| ||||| ||||||||||    |||||||||  |||||||||| ||||||| |||||     
T  15810474 tcttggtgatcaatggtgcaaatagagttgttggacacatttttgatagctgtccaaagtcctaattgatttcatttttcttcttaaaaatagacagaat 15810573  T
Q  101 gttctcagaatgttctttctgatttgcctggctttgaaagcattgttgcttgcttgcgcatgagataaccagttgtagtgagctgtataacttgttgccc 200  Q
    | |||||||||||| | |||||||||| |  |||||   ||| |||||||||||||||  ||||| |||||| |||| |||||||| | ||||||||| |    
T  15810574 gatctcagaatgttatgtctgatttgcataactttgcttgcactgttgcttgcttgcgagtgagagaaccagctgtaatgagctgttttacttgttgctc 15810673  T
Q  201 aat 203  Q
    |||    
T  15810674 aat 15810676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 130
Target Start/End: Original strand, 41000872 - 41001003
Alignment:
Q  2 cttggtgatcaagggagaaaatatagctgttggacgtgttttag---atagttgtccaaagtttctattgatttctcttttcttctttaaaatagccaga 98  Q
    ||||||||||||| | ||||||| || ||||||||  |||||     |||| |||||||||| ||  |||||||| ||||||||||| ||| | | ||||    
T  41000872 cttggtgatcaagagtgaaaatagagatgttggacacgtttttttttatagatgtccaaagtctcatttgatttcacttttcttcttaaaattgggcaga 41000971  T
Q  99 acgttctcagaatgttctttctgatttgcctg 130  Q
    | | |||||||||||| | |||||||||||||    
T  41000972 aagatctcagaatgttatgtctgatttgcctg 41001003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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