View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16909_low_1 (Length: 443)
Name: NF16909_low_1
Description: NF16909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16909_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 217 - 428
Target Start/End: Original strand, 52402650 - 52402860
Alignment:
| Q |
217 |
atcatgaaataatagtaacacaactacaatcaaacgccaattcctagcataaatttgacaaacacgctctgaccaacatatactgcattgctcaagaatc |
316 |
Q |
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| T |
52402650 |
atcatgaaataatagtaacacaactacaatcaaacgccaattcctagcataaatttgacaaacacgctctgaccaacatatactgcattgctcaagaatc |
52402749 |
T |
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| Q |
317 |
tgaatactgtaatattgctcgatgtctcttaagatcttgatatcatccctgcaaaccatgattaggcccaactataagaaacaagtaatatgaattgaaa |
416 |
Q |
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| T |
52402750 |
tgaatactgtaatattgctcgatgtctcttaagatctcgatatcat-cctgcaaaccatgattgggcccaactataagaaacaagtaatatgaattgaaa |
52402848 |
T |
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| Q |
417 |
accatactaact |
428 |
Q |
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|||||||||||| |
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| T |
52402849 |
accatactaact |
52402860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 27 - 135
Target Start/End: Original strand, 52402527 - 52402635
Alignment:
| Q |
27 |
tcaacataacatgtcatttgaatcataaaattagacatcaaccttgaatgtaagatgatggacaaaaagcaatcaacactgtttacaaattgatctcagc |
126 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |
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| T |
52402527 |
tcaacataacatgccatttgaatcataaaattagacatcaaccttgaatgtaagatgatggacaaaaagcaatcaacccattttacaaattgatctcagc |
52402626 |
T |
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| Q |
127 |
cgtatcggc |
135 |
Q |
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| T |
52402627 |
cgtatcggc |
52402635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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