View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16909_low_11 (Length: 221)
Name: NF16909_low_11
Description: NF16909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16909_low_11 |
 | |
|
| [»] scaffold0040 (2 HSPs) |
| | |
|
| [»] scaffold0482 (1 HSPs) |
| | |
|
| [»] scaffold0233 (1 HSPs) |
| | |
|
| [»] scaffold0028 (2 HSPs) |
| | |
|
| [»] scaffold0001 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 159; Significance: 8e-85; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 22488880 - 22488666
Alignment:
| Q |
1 |
tcttggtgatcaagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattgatttctcttttcttctttaaaatagccagaac |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| ||||| ||||| |||||||||| || |||||||||||||||||||||||||||||||||||| |
|
|
| T |
22488880 |
tcttggtgatcaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagccagaac |
22488781 |
T |
|
| Q |
101 |
gttctcagaatgttctttctgatttgcctggctttgaaagcattgttgcttgcttgcgcatgagataaccagttgtagtgagctgtataacttgttgccc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||| |||||||||||||||| |||| |
|
|
| T |
22488780 |
gttctcagaatgttctttctgatttgcctggctttgaaagcactgttgcttgcttgcacatgagataaccagctgtaatgagctgtataacttgctgcct |
22488681 |
T |
|
| Q |
201 |
aatgttgatgatgtc |
215 |
Q |
| |
|
|||| |||||||||| |
|
|
| T |
22488680 |
aatgctgatgatgtc |
22488666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 4635656 - 4635442
Alignment:
| Q |
1 |
tcttggtgatcaagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattgatttctcttttcttctttaaaatagccagaac |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| | ||||| |||||||||||||||| || |||||||| ||||||||||||||||||||| |||| |
|
|
| T |
4635656 |
tcttggtgatcaagggagaaaatagagctgttggatgcgtttttgatagttgtccaaagtctcaattgatttttcttttcttctttaaaatagctagaat |
4635557 |
T |
|
| Q |
101 |
gttctcagaatgttctttctgatttgcctggctttgaaagcattgttgcttgcttgcgcatgagataaccagttgtagtgagctgtataacttgttgccc |
200 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||| | |||||||||||||| ||||| ||||||||||| |||| ||||||||||||||| | |
|
|
| T |
4635556 |
gttctcaaaatgttctttctgatttgcctggctttgaaagcactattgcttgcttgcgcgtgagagaaccagttgtaatgagttgtataacttgttgcgc |
4635457 |
T |
|
| Q |
201 |
aatgttgatgatgtc |
215 |
Q |
| |
|
| || |||||||||| |
|
|
| T |
4635456 |
actgctgatgatgtc |
4635442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 24412522 - 24412307
Alignment:
| Q |
1 |
tcttggtgatcaagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattgatttctcttttcttctttaaaatagccagaac |
100 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||| ||||| ||||| |||||||||| || |||||||||||||||||||||||||||||||||||| |
|
|
| T |
24412522 |
tcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagccagaac |
24412423 |
T |
|
| Q |
101 |
gttctcagaatgttctttctgatttgcctggctttgaaagcattgttgc-ttgcttgcgcatgagataaccagttgtagtgagctgtataacttgttgcc |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| ||||||| |||||| ||||||||||||||||||||||| ||| |||||||||||||||| ||| |
|
|
| T |
24412422 |
gttctcagaatgttctttctgatttgcctgacttagaaagcactgttgctttgcttgcgcatgagataaccagctgtgatgagctgtataacttgcagcc |
24412323 |
T |
|
| Q |
200 |
caatgttgatgatgtc |
215 |
Q |
| |
|
|| | |||||||||| |
|
|
| T |
24412322 |
cacttctgatgatgtc |
24412307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 30445323 - 30445538
Alignment:
| Q |
1 |
tcttggtgatcaagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattgatttctcttttcttctttaaaatagccagaac |
100 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||| ||||| ||||| |||||||||| || |||||||||||||||||||| |||||||||||||| |
|
|
| T |
30445323 |
tcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcatttgatttctcttttcttcttaaaaatagccagaac |
30445422 |
T |
|
| Q |
101 |
gttctcagaatgttctttctgatttgcctggctttgaaagcattgttgc-ttgcttgcgcatgagataaccagttgtagtgagctgtataacttgttgcc |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||| |||| |||||||||||||||| ||| |
|
|
| T |
30445423 |
gttctcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagctgtataacttgcagcc |
30445522 |
T |
|
| Q |
200 |
caatgttgatgatgtc |
215 |
Q |
| |
|
|| | |||||||||| |
|
|
| T |
30445523 |
cacttctgatgatgtc |
30445538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 30454695 - 30454910
Alignment:
| Q |
1 |
tcttggtgatcaagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattgatttctcttttcttctttaaaatagccagaac |
100 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||| ||||| ||||| |||||||||| || |||||||||||||||||||| |||||||||||||| |
|
|
| T |
30454695 |
tcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcatttgatttctcttttcttcttaaaaatagccagaac |
30454794 |
T |
|
| Q |
101 |
gttctcagaatgttctttctgatttgcctggctttgaaagcattgttgc-ttgcttgcgcatgagataaccagttgtagtgagctgtataacttgttgcc |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||| |||| |||||||||||||||| ||| |
|
|
| T |
30454795 |
gttctcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagctgtataacttgcagcc |
30454894 |
T |
|
| Q |
200 |
caatgttgatgatgtc |
215 |
Q |
| |
|
|| | |||||||||| |
|
|
| T |
30454895 |
cacttctgatgatgtc |
30454910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 30459753 - 30459968
Alignment:
| Q |
1 |
tcttggtgatcaagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattgatttctcttttcttctttaaaatagccagaac |
100 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||| ||||| ||||| |||||||||| || |||||||||||||||||||| |||||||||||||| |
|
|
| T |
30459753 |
tcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcatttgatttctcttttcttcttaaaaatagccagaac |
30459852 |
T |
|
| Q |
101 |
gttctcagaatgttctttctgatttgcctggctttgaaagcattgttgc-ttgcttgcgcatgagataaccagttgtagtgagctgtataacttgttgcc |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||| |||| |||||||||||||||| ||| |
|
|
| T |
30459853 |
gttctcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagctgtataacttgcagcc |
30459952 |
T |
|
| Q |
200 |
caatgttgatgatgtc |
215 |
Q |
| |
|
|| | |||||||||| |
|
|
| T |
30459953 |
cacttctgatgatgtc |
30459968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 18568732 - 18568538
Alignment:
| Q |
1 |
tcttggtgatcaagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattgatttctcttttcttctttaaaatagccagaac |
100 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||| ||||| ||||| |||||||||| || |||||||||||||||||||| |||||||||||||| |
|
|
| T |
18568732 |
tcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcatttgatttctcttttcttcttaaaaatagccagaac |
18568633 |
T |
|
| Q |
101 |
gttctcagaatgttctttctgatttgcctggctttgaaagcattgttgc-ttgcttgcgcatgagataaccagttgtagtgagctgtataacttg |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||| |||| |||||||| ||||||| |
|
|
| T |
18568632 |
gttctcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagctgtgtaacttg |
18568538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 24421971 - 24421767
Alignment:
| Q |
1 |
tcttggtgatcaagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattgatttctcttttcttctttaaaatagccagaac |
100 |
Q |
| |
|
||||||||| |||||||||||||| ||||| ||||| ||||| ||||| |||||||||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
24421971 |
tcttggtgaccaagggagaaaatagagctgctggacacgtttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagcc----- |
24421877 |
T |
|
| Q |
101 |
gttctcagaatgttctttctgatttgcctggctttgaaagcattgttgc-ttgcttgcgcatgagataaccagttgtagtgagctgtataacttgttgcc |
199 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||||| |||||| ||||||||||||||||||||||| ||| |||||||||||||||| ||| |
|
|
| T |
24421876 |
------agaatgttctttctgatttgcctgacttagaaagcactgttgctttgcttgcgcatgagataaccagctgtgatgagctgtataacttgcagcc |
24421783 |
T |
|
| Q |
200 |
caatgttgatgatgtc |
215 |
Q |
| |
|
|| | |||||||||| |
|
|
| T |
24421782 |
cacttctgatgatgtc |
24421767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 13 - 204
Target Start/End: Original strand, 24278813 - 24279004
Alignment:
| Q |
13 |
agggagaaaatatagctgttggacgtgtttta-gatagttgtccaaagtttctattgatttctcttttcttctttaaaa-tagccagaacgttctcagaa |
110 |
Q |
| |
|
|||||||||||| || |||||||| ||||| ||||| |||||||| | || ||||||||||| ||||||||||||| ||||||||||||||||| || |
|
|
| T |
24278813 |
agggagaaaatagagttgttggacacgttttttgatagctgtccaaaatctcagttgatttctctcttcttctttaaaaatagccagaacgttctca-aa |
24278911 |
T |
|
| Q |
111 |
tgttctttctgatttgcctggctttgaaagcattgttgcttgcttgcgcatgagataaccagttgtagtgagctgtataacttgttgcccaatg |
204 |
Q |
| |
|
|||| | |||||||||||| ||||| ||||||||||||||||| |||||||| |||||||||| ||| |||| | ||||||||||||||| |
|
|
| T |
24278912 |
tgttgtgtctgatttgcctaactttgcttgcattgttgcttgcttgtgcatgagagtaccagttgtaatgaactgt-ttacttgttgcccaatg |
24279004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 13 - 204
Target Start/End: Complemental strand, 24383401 - 24383210
Alignment:
| Q |
13 |
agggagaaaatatagctgttggacgtgtttta-gatagttgtccaaagtttctattgatttctcttttcttctttaaaa-tagccagaacgttctcagaa |
110 |
Q |
| |
|
|||||||||||| || |||||||| ||||| ||||| |||||||| | || ||||||||||| ||||||||||||| ||||||||||||||||| || |
|
|
| T |
24383401 |
agggagaaaatagagttgttggacacgttttttgatagctgtccaaaatctcagttgatttctctcttcttctttaaaaatagccagaacgttctca-aa |
24383303 |
T |
|
| Q |
111 |
tgttctttctgatttgcctggctttgaaagcattgttgcttgcttgcgcatgagataaccagttgtagtgagctgtataacttgttgcccaatg |
204 |
Q |
| |
|
|||| | |||||||||||| ||||| ||||||||||||||||| |||||||| |||||||||| ||| |||| | ||||||||||||||| |
|
|
| T |
24383302 |
tgttgtgtctgatttgcctaactttgcttgcattgttgcttgcttgtgcatgagagtaccagttgtaatgaactgt-ttacttgttgcccaatg |
24383210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 156; Significance: 5e-83; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 23896110 - 23896325
Alignment:
| Q |
1 |
tcttggtgatcaagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattgatttctcttttcttctttaaaatagccagaac |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||| || |||||||||||||||||||||||||||||||||||| |
|
|
| T |
23896110 |
tcttggtgatcaagggagaaaatagagctgttggacacgtttttgatagttgtccaaagtctcaattgatttctcttttcttctttaaaatagccagaac |
23896209 |
T |
|
| Q |
101 |
gttctcagaatgttctttctgatttgcctggctttgaaagcattgttgc-ttgcttgcgcatgagataaccagttgtagtgagctgtataacttgttgcc |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |||| |||||||||||||||| |||| |
|
|
| T |
23896210 |
gttctcagaatgttctttctgatttgcctggctttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagctgtataacttgctgcc |
23896309 |
T |
|
| Q |
200 |
caatgttgatgatgtc |
215 |
Q |
| |
|
|| | |||||||||| |
|
|
| T |
23896310 |
cacttctgatgatgtc |
23896325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 18420246 - 18420031
Alignment:
| Q |
1 |
tcttggtgatcaagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattgatttctcttttcttctttaaaatagccagaac |
100 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||| ||||| ||||| |||||||||| || |||||||||||||||||||||||||||||||||||| |
|
|
| T |
18420246 |
tcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagccagaac |
18420147 |
T |
|
| Q |
101 |
gttctcagaatgttctttctgatttgcctggctttgaaagcattgttgc-ttgcttgcgcatgagataaccagttgtagtgagctgtataacttgttgcc |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| ||||||| |||||| ||||||||||||||||||||||| ||| |||||||||||||||| ||| |
|
|
| T |
18420146 |
gttctcagaatgttctttctgatttgcctgacttagaaagcactgttgctttgcttgcgcatgagataaccagctgtgatgagctgtataacttgcagcc |
18420047 |
T |
|
| Q |
200 |
caatgttgatgatgtc |
215 |
Q |
| |
|
|| | |||||||||| |
|
|
| T |
18420046 |
cacttctgatgatgtc |
18420031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 2 - 116
Target Start/End: Complemental strand, 14101884 - 14101770
Alignment:
| Q |
2 |
cttggtgatcaagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattgatttctcttttcttctttaaaatagccagaacg |
101 |
Q |
| |
|
||||||||||||| | ||||||| || ||||||| ||||| | || ||||||||| ||| ||||||||| ||||||||| |||||| | |||||| |
|
|
| T |
14101884 |
cttggtgatcaagagtgaaaatagagttgttggatacgtttttggcagctgtccaaagcttcaattgatttcacttttcttcattaaaacgggaagaacg |
14101785 |
T |
|
| Q |
102 |
ttctcagaatgttct |
116 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
14101784 |
ttctcagaatgttct |
14101770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 147; Significance: 1e-77; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 15843391 - 15843605
Alignment:
| Q |
1 |
tcttggtgatcaagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattgatttctcttttcttctttaaaatagccagaac |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| ||||| |||| ||| |||||| || |||||||||||||||||||||||||||||||| ||| |
|
|
| T |
15843391 |
tcttggtgatcaagggagaaaatagagctgttggacacgttttttatagctgttcaaagtctcaattgatttctcttttcttctttaaaatagccataac |
15843490 |
T |
|
| Q |
101 |
gttctcagaatgttctttctgatttgcctggctttgaaagcattgttgcttgcttgcgcatgagataaccagttgtagtgagctgtataacttgttgccc |
200 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||| ||| ||||| |
|
|
| T |
15843491 |
gttctcataatgttctttctgatttgcctggctttgaaagcactgttgcttgcttgcgcatgagataaccagctgtaatgagctgtataatttgctgccc |
15843590 |
T |
|
| Q |
201 |
aatgttgatgatgtc |
215 |
Q |
| |
|
|||| |||||||||| |
|
|
| T |
15843591 |
aatgctgatgatgtc |
15843605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 37058781 - 37058566
Alignment:
| Q |
1 |
tcttggtgatcaagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattgatttctcttttcttctttaaaatagccagaac |
100 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||| ||||| ||||| |||||||||| || |||||||||||||||||||||||||||||||||||| |
|
|
| T |
37058781 |
tcttggtgatcaagggagaaaatagagttgttggacacgtttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagccagaac |
37058682 |
T |
|
| Q |
101 |
gttctcagaatgttctttctgatttgcctggctttgaaagcattgttg-cttgcttgcgcatgagataaccagttgtagtgagctgtataacttgttgcc |
199 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||| ||||||||||||||| |||| |
|
|
| T |
37058681 |
gttctcaaaatgttctttctgatttgcctggctttgaaagcactgttgttttgcttgcgcatgagataaccagctgtaatgagctgtataactttgtgcc |
37058582 |
T |
|
| Q |
200 |
caatgttgatgatgtc |
215 |
Q |
| |
|
|| | |||||||||| |
|
|
| T |
37058581 |
cacttctgatgatgtc |
37058566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 3242781 - 3242996
Alignment:
| Q |
1 |
tcttggtgatcaagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattgatttctcttttcttctttaaaatagccagaac |
100 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||| ||||| ||||| |||||||||| || |||||||||||||||||||||||||||||||||||| |
|
|
| T |
3242781 |
tcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagccagaac |
3242880 |
T |
|
| Q |
101 |
gttctcagaatgttctttctgatttgcctggctttgaaagcattgttgc-ttgcttgcgcatgagataaccagttgtagtgagctgtataacttgttgcc |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| ||||||| |||||| ||||||||||||||||||||||| ||| |||||||||||||||| ||| |
|
|
| T |
3242881 |
gttctcagaatgttctttctgatttgcctgacttagaaagcactgttgctttgcttgcgcatgagataaccagctgtgatgagctgtataacttgcagcc |
3242980 |
T |
|
| Q |
200 |
caatgttgatgatgtc |
215 |
Q |
| |
|
|| | |||||||||| |
|
|
| T |
3242981 |
cacttctgatgatgtc |
3242996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 3917760 - 3917545
Alignment:
| Q |
1 |
tcttggtgatcaagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattgatttctcttttcttctttaaaatagccagaac |
100 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||| ||||| ||||| |||||||||| || |||||||||||||||||||||||||||||||||||| |
|
|
| T |
3917760 |
tcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagccagaac |
3917661 |
T |
|
| Q |
101 |
gttctcagaatgttctttctgatttgcctggctttgaaagcattgttgc-ttgcttgcgcatgagataaccagttgtagtgagctgtataacttgttgcc |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| ||||||| |||||| ||||||||||||||||||||||| ||| |||||||||||||||| ||| |
|
|
| T |
3917660 |
gttctcagaatgttctttctgatttgcctgacttagaaagcactgttgctttgcttgcgcatgagataaccagctgtgatgagctgtataacttgcagcc |
3917561 |
T |
|
| Q |
200 |
caatgttgatgatgtc |
215 |
Q |
| |
|
|| | |||||||||| |
|
|
| T |
3917560 |
cacttctgatgatgtc |
3917545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 26812202 - 26811987
Alignment:
| Q |
1 |
tcttggtgatcaagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattgatttctcttttcttctttaaaatagccagaac |
100 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||| ||||| ||||| |||||||||| || |||||||||||||||||||||||||||||||||||| |
|
|
| T |
26812202 |
tcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagccagaac |
26812103 |
T |
|
| Q |
101 |
gttctcagaatgttctttctgatttgcctggctttgaaagcattgttgc-ttgcttgcgcatgagataaccagttgtagtgagctgtataacttgttgcc |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| ||||||| |||||| ||||||||||||||||||||||| ||| |||||||||||||||| ||| |
|
|
| T |
26812102 |
gttctcagaatgttctttctgatttgcctgacttagaaagcactgttgctttgcttgcgcatgagataaccagctgtgatgagctgtataacttgcagcc |
26812003 |
T |
|
| Q |
200 |
caatgttgatgatgtc |
215 |
Q |
| |
|
|| | |||||||||| |
|
|
| T |
26812002 |
cacttctgatgatgtc |
26811987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 26821669 - 26821454
Alignment:
| Q |
1 |
tcttggtgatcaagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattgatttctcttttcttctttaaaatagccagaac |
100 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||| ||||| ||||| |||||||||| || |||||||||||||||||||||||||||||||||||| |
|
|
| T |
26821669 |
tcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagccagaac |
26821570 |
T |
|
| Q |
101 |
gttctcagaatgttctttctgatttgcctggctttgaaagcattgttgc-ttgcttgcgcatgagataaccagttgtagtgagctgtataacttgttgcc |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| ||||||| |||||| ||||||||||||||||||||||| ||| |||||||||||||||| ||| |
|
|
| T |
26821569 |
gttctcagaatgttctttctgatttgcctgacttagaaagcactgttgctttgcttgcgcatgagataaccagctgtgatgagctgtataacttgcagcc |
26821470 |
T |
|
| Q |
200 |
caatgttgatgatgtc |
215 |
Q |
| |
|
|| | |||||||||| |
|
|
| T |
26821469 |
cacttctgatgatgtc |
26821454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 54690407 - 54690622
Alignment:
| Q |
1 |
tcttggtgatcaagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattgatttctcttttcttctttaaaatagccagaac |
100 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||| ||||| ||||| |||||||||| || |||||||||||||||||||||||||||||||||||| |
|
|
| T |
54690407 |
tcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagccagaac |
54690506 |
T |
|
| Q |
101 |
gttctcagaatgttctttctgatttgcctggctttgaaagcattgttgc-ttgcttgcgcatgagataaccagttgtagtgagctgtataacttgttgcc |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| ||||||| |||||| ||||||||||||||||||||||| ||| |||||||||||||||| ||| |
|
|
| T |
54690507 |
gttctcagaatgttctttctgatttgcctgacttagaaagcactgttgctttgcttgcgcatgagataaccagctgtgatgagctgtataacttgcagcc |
54690606 |
T |
|
| Q |
200 |
caatgttgatgatgtc |
215 |
Q |
| |
|
|| | |||||||||| |
|
|
| T |
54690607 |
cacttctgatgatgtc |
54690622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 54699838 - 54700053
Alignment:
| Q |
1 |
tcttggtgatcaagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattgatttctcttttcttctttaaaatagccagaac |
100 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||| ||||| ||||| |||||||||| || |||||||||||||||||||||||||||||||||||| |
|
|
| T |
54699838 |
tcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagccagaac |
54699937 |
T |
|
| Q |
101 |
gttctcagaatgttctttctgatttgcctggctttgaaagcattgttgc-ttgcttgcgcatgagataaccagttgtagtgagctgtataacttgttgcc |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| ||||||| |||||| ||||||||||||||||||||||| ||| |||||||||||||||| ||| |
|
|
| T |
54699938 |
gttctcagaatgttctttctgatttgcctgacttagaaagcactgttgctttgcttgcgcatgagataaccagctgtgatgagctgtataacttgcagcc |
54700037 |
T |
|
| Q |
200 |
caatgttgatgatgtc |
215 |
Q |
| |
|
|| | |||||||||| |
|
|
| T |
54700038 |
cacttctgatgatgtc |
54700053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0040 (Bit Score: 144; Significance: 7e-76; HSPs: 2)
Name: scaffold0040
Description:
Target: scaffold0040; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 31301 - 31516
Alignment:
| Q |
1 |
tcttggtgatcaagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattgatttctcttttcttctttaaaatagccagaac |
100 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||| ||||| ||||| |||||||||| || |||||||||||||||||||||||||||||||||||| |
|
|
| T |
31301 |
tcttggtgaacaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagccagaac |
31400 |
T |
|
| Q |
101 |
gttctcagaatgttctttctgatttgcctggctttgaaagcattgttgc-ttgcttgcgcatgagataaccagttgtagtgagctgtataacttgttgcc |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||| |||| |||||||||||||||| |||| |
|
|
| T |
31401 |
gttctcagaatgttctttctgatttgcctggctttgaaagcactgttgctttgcttgcacatgagataaccagctgtaatgagctgtataacttgctgcc |
31500 |
T |
|
| Q |
200 |
caatgttgatgatgtc |
215 |
Q |
| |
|
|| | |||||||||| |
|
|
| T |
31501 |
cacttctgatgatgtc |
31516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0040; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 9740 - 9535
Alignment:
| Q |
1 |
tcttggtgatcaagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattgatttctcttttcttctttaaaatagccagaac |
100 |
Q |
| |
|
|||||||||||||||| ||||||| || || ||||| |||| ||||| |||||||||| || ||| |||| ||||||||||| |||||||| ||||| |
|
|
| T |
9740 |
tcttggtgatcaagggtgaaaatagagttgatggacacatttttgatagctgtccaaagtctcatttgttttcacttttcttcttaaaaatagctagaac |
9641 |
T |
|
| Q |
101 |
gttctcagaatgttctttctgatttgcctggctttgaaagcattgttgcttgcttgcgcatgagataaccagttgtagtgagctgtataacttgttgccc |
200 |
Q |
| |
|
|||||||||||||||| |||||||||||| |||||| || ||||||||||||||| ||| | |||||| | || |||| ||| ||| ||||||| | |
|
|
| T |
9640 |
gttctcagaatgttctgtctgatttgcctagctttgcttgctctgttgcttgcttgcgagtgaaagaaccagctataatgagttgtttaaattgttgctc |
9541 |
T |
|
| Q |
201 |
aatgtt |
206 |
Q |
| |
|
|||||| |
|
|
| T |
9540 |
aatgtt |
9535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 144; Significance: 7e-76; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 4118918 - 4119133
Alignment:
| Q |
1 |
tcttggtgatcaagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattgatttctcttttcttctttaaaatagccagaac |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| ||||| ||||| |||||||||| || |||||||||||||||||||||||||||||||| ||| |
|
|
| T |
4118918 |
tcttggtgatcaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagccaaaac |
4119017 |
T |
|
| Q |
101 |
gttctcagaatgttctttctgatttgcctggctttgaaagcattgttgc-ttgcttgcgcatgagataaccagttgtagtgagctgtataacttgttgcc |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| | || |||||||||||||||||||| |
|
|
| T |
4119018 |
gttctcagaatgttctttctgatttgcctggctttgaaagcactgttgctttgcttgcgcatgagataaccagctttaatgagctgtataacttgttgct |
4119117 |
T |
|
| Q |
200 |
caatgttgatgatgtc |
215 |
Q |
| |
|
|| | |||||||||| |
|
|
| T |
4119118 |
cacttctgatgatgtc |
4119133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 15173013 - 15172798
Alignment:
| Q |
1 |
tcttggtgatcaagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattgatttctcttttcttctttaaaatagccagaac |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| ||||| ||||| |||||||||| || |||||||||||||||||||||||||||||||||||| |
|
|
| T |
15173013 |
tcttggtgatcaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagccagaac |
15172914 |
T |
|
| Q |
101 |
gttctcagaatgttctttctgatttgcctggctttgaaagcattgttgc-ttgcttgcgcatgagataaccagttgtagtgagctgtataacttgttgcc |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| | || |||||||||||||||| ||| |
|
|
| T |
15172913 |
gttctcagaatgttctttctgatttgcctggctttgaaagcactgttgctttgcttgcgcatgagataaccagctataatgagctgtataacttgctgct |
15172814 |
T |
|
| Q |
200 |
caatgttgatgatgtc |
215 |
Q |
| |
|
|| | |||||||||| |
|
|
| T |
15172813 |
cacttctgatgatgtc |
15172798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 7592700 - 7592485
Alignment:
| Q |
1 |
tcttggtgatcaagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattgatttctcttttcttctttaaaatagccagaac |
100 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||| ||||| ||||| |||||||||| || |||||||||||||||||||||||||||||||||||| |
|
|
| T |
7592700 |
tcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagccagaac |
7592601 |
T |
|
| Q |
101 |
gttctcagaatgttctttctgatttgcctggctttgaaagcattgttgc-ttgcttgcgcatgagataaccagttgtagtgagctgtataacttgttgcc |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| ||||||| |||||| ||||||||||||||||||||||| ||| |||||||||||||||| ||| |
|
|
| T |
7592600 |
gttctcagaatgttctttctgatttgcctgacttagaaagcactgttgctttgcttgcgcatgagataaccagctgtgatgagctgtataacttgcagcc |
7592501 |
T |
|
| Q |
200 |
caatgttgatgatgtc |
215 |
Q |
| |
|
|| | |||||||||| |
|
|
| T |
7592500 |
cacttctgatgatgtc |
7592485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 15202439 - 15202224
Alignment:
| Q |
1 |
tcttggtgatcaagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattgatttctcttttcttctttaaaatagccagaac |
100 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||| ||||| ||||| |||||||||| || |||||||||||||||||||||||||||||||||||| |
|
|
| T |
15202439 |
tcttggtgatcaagggagaaaatagagttgttggacacgtttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagccagaac |
15202340 |
T |
|
| Q |
101 |
gttctcagaatgttctttctgatttgcctggctttgaaagcattgttgc-ttgcttgcgcatgagataaccagttgtagtgagctgtataacttgttgcc |
199 |
Q |
| |
|
||||| ||||||||||||||||||| |||||||| |||||| |||||| ||||||||||||||||||||||| |||| |||| ||||||||||| |||| |
|
|
| T |
15202339 |
gttctatgaatgttctttctgatttgtctggctttaaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagttgtataacttgctgcc |
15202240 |
T |
|
| Q |
200 |
caatgttgatgatgtc |
215 |
Q |
| |
|
|| | |||||||||| |
|
|
| T |
15202239 |
cacttctgatgatgtc |
15202224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0482 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: scaffold0482
Description:
Target: scaffold0482; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 3227 - 3012
Alignment:
| Q |
1 |
tcttggtgatcaagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattgatttctcttttcttctttaaaatagccagaac |
100 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||| ||||| ||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
3227 |
tcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtatcttttgatttctcttttcttctttaaaatagccagaac |
3128 |
T |
|
| Q |
101 |
gttctcagaatgttctttctgatttgcctggctttgaaagcattgttgc-ttgcttgcgcatgagataaccagttgtagtgagctgtataacttgttgcc |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||| |||| |||||||||||||||| ||| |
|
|
| T |
3127 |
gttctcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagctgtataacttgcagcc |
3028 |
T |
|
| Q |
200 |
caatgttgatgatgtc |
215 |
Q |
| |
|
|| | |||||||||| |
|
|
| T |
3027 |
cacttctgatgatgtc |
3012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 7789572 - 7789787
Alignment:
| Q |
1 |
tcttggtgatcaagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattgatttctcttttcttctttaaaatagccagaac |
100 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||| ||||| ||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
7789572 |
tcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtatcttttgatttctcttttcttctttaaaatagccagaac |
7789671 |
T |
|
| Q |
101 |
gttctcagaatgttctttctgatttgcctggctttgaaagcattgttgc-ttgcttgcgcatgagataaccagttgtagtgagctgtataacttgttgcc |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||| |||| |||||||||||||||| ||| |
|
|
| T |
7789672 |
gttctcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagctgtataacttgcagcc |
7789771 |
T |
|
| Q |
200 |
caatgttgatgatgtc |
215 |
Q |
| |
|
|| | |||||||||| |
|
|
| T |
7789772 |
cacttctgatgatgtc |
7789787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0233 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: scaffold0233
Description:
Target: scaffold0233; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 26598 - 26812
Alignment:
| Q |
1 |
tcttggtgatcaagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattgatttctcttttcttctttaaaatagccagaac |
100 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||| |||| ||||| | |||||||| || |||||||||||||||||||||||||||||||||||| |
|
|
| T |
26598 |
tcttggtgatcaagggagaaaatagagatgttggacacatttttgatagctatccaaagtctcaattgatttctcttttcttctttaaaatagccagaac |
26697 |
T |
|
| Q |
101 |
gttctcagaatgttctttctgatttgcctggctttgaaagcattgttgcttgcttgcgcatgagataaccagttgtagtgagctgtataacttgttgccc |
200 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||| ||||||||| |||||||||| ||| ||| |||| |||||||||||||||| ||||| |
|
|
| T |
26698 |
gttctcagaatgttctttctgatttgtctggctttgaaagcactgttgcttgtatgcgcatgagttaatcagctgtaatgagctgtataacttgctgccc |
26797 |
T |
|
| Q |
201 |
aatgttgatgatgtc |
215 |
Q |
| |
|
|||| |||||||||| |
|
|
| T |
26798 |
aatgctgatgatgtc |
26812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 94925 - 95140
Alignment:
| Q |
1 |
tcttggtgatcaagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattgatttctcttttcttctttaaaatagccagaac |
100 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||| ||||| ||||| |||||||||| || |||||||||||||||||||||||||||||||||||| |
|
|
| T |
94925 |
tcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagccagaac |
95024 |
T |
|
| Q |
101 |
gttctcagaatgttctttctgatttgcctggctttgaaagcattgttgc-ttgcttgcgcatgagataaccagttgtagtgagctgtataacttgttgcc |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| ||||||| |||||| ||||||||||||||||||||||| ||| |||||||||||||||| ||| |
|
|
| T |
95025 |
gttctcagaatgttctttctgatttgcctgacttagaaagcactgttgctttgcttgcgcatgagataaccagctgtgatgagctgtataacttgcagcc |
95124 |
T |
|
| Q |
200 |
caatgttgatgatgtc |
215 |
Q |
| |
|
|| | |||||||||| |
|
|
| T |
95125 |
cacttctgatgatgtc |
95140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 104366 - 104581
Alignment:
| Q |
1 |
tcttggtgatcaagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattgatttctcttttcttctttaaaatagccagaac |
100 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||| ||||| ||||| |||||||||| || |||||||||||||||||||||||||||||||||||| |
|
|
| T |
104366 |
tcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagccagaac |
104465 |
T |
|
| Q |
101 |
gttctcagaatgttctttctgatttgcctggctttgaaagcattgttgc-ttgcttgcgcatgagataaccagttgtagtgagctgtataacttgttgcc |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| ||||||| |||||| ||||||||||||||||||||||| ||| |||||||||||||||| ||| |
|
|
| T |
104466 |
gttctcagaatgttctttctgatttgcctgacttagaaagcactgttgctttgcttgcgcatgagataaccagctgtgatgagctgtataacttgcagcc |
104565 |
T |
|
| Q |
200 |
caatgttgatgatgtc |
215 |
Q |
| |
|
|| | |||||||||| |
|
|
| T |
104566 |
cacttctgatgatgtc |
104581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 128; Significance: 2e-66; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 28352215 - 28352430
Alignment:
| Q |
1 |
tcttggtgatcaagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattgatttctcttttcttctttaaaatagccagaac |
100 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||| ||||| ||||| |||||||||| || |||||||||||||||||||||||||||||||||||| |
|
|
| T |
28352215 |
tcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagccagaac |
28352314 |
T |
|
| Q |
101 |
gttctcagaatgttctttctgatttgcctggctttgaaagcattgttgc-ttgcttgcgcatgagataaccagttgtagtgagctgtataacttgttgcc |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| ||||||| |||||| ||||||||||||||||||||||| ||| |||| ||||||||||| ||| |
|
|
| T |
28352315 |
gttctcagaatgttctttctgatttgcctgacttagaaagcactgttgctttgcttgcgcatgagataaccagctgtgatgagttgtataacttgcagcc |
28352414 |
T |
|
| Q |
200 |
caatgttgatgatgtc |
215 |
Q |
| |
|
|| | |||||||||| |
|
|
| T |
28352415 |
cacttctgatgatgtc |
28352430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 38529631 - 38529846
Alignment:
| Q |
1 |
tcttggtgatcaagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattgatttctctttt-cttctttaaaatagccagaa |
99 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||| ||||| ||||||||||||||| || |||||||||| |||| ||||||||||||||||||| |
|
|
| T |
38529631 |
tcttggtgatcaagggagaaaatagagttgttggacacgttttttatagttgtccaaagtctcaattgatttctttttttcttctttaaaatagccagac |
38529730 |
T |
|
| Q |
100 |
cgttctcagaatgttctttctgatttgcctggctttgaaagcattgttgcttgcttgcgcatgagataaccagttgtagtgagctgtataacttgttgcc |
199 |
Q |
| |
|
||||||||||||||||||||||| ||| ||| ||||||||||| |||||||||||||||| ||||| |||||| |||| |||| ||| |||||||||||| |
|
|
| T |
38529731 |
cgttctcagaatgttctttctgaattgtctgactttgaaagcactgttgcttgcttgcgcgtgagagaaccagctgtaatgagttgtttaacttgttgcc |
38529830 |
T |
|
| Q |
200 |
caatgttgatgatgtc |
215 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
38529831 |
caatgttgatgatgtc |
38529846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 11 - 215
Target Start/End: Original strand, 28368157 - 28368362
Alignment:
| Q |
11 |
caagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattgatttctcttttcttctttaaaatagccagaacgttctcagaa |
110 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||| ||||| |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28368157 |
caagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagccagaacgttctcagaa |
28368256 |
T |
|
| Q |
111 |
tgttctttctgatttgcctggctttgaaagcattgttgc-ttgcttgcgcatgagataaccagttgtagtgagctgtataacttgttgcccaatgttgat |
209 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||| |||||| ||||||||||||||||||||||| ||| |||||||||||||||| ||||| | |||| |
|
|
| T |
28368257 |
tgttctttctgatttgcctgacttagaaagcactgttgctttgcttgcgcatgagataaccagctgtgatgagctgtataacttgcagcccacttctgat |
28368356 |
T |
|
| Q |
210 |
gatgtc |
215 |
Q |
| |
|
|||||| |
|
|
| T |
28368357 |
gatgtc |
28368362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 11 - 215
Target Start/End: Original strand, 28375975 - 28376180
Alignment:
| Q |
11 |
caagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattgatttctcttttcttctttaaaatagccagaacgttctcagaa |
110 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||| ||||| |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28375975 |
caagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagccagaacgttctcagaa |
28376074 |
T |
|
| Q |
111 |
tgttctttctgatttgcctggctttgaaagcattgttgc-ttgcttgcgcatgagataaccagttgtagtgagctgtataacttgttgcccaatgttgat |
209 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||| |||||| ||||||||||||||||||||||| ||| |||||||||||||||| ||||| | |||| |
|
|
| T |
28376075 |
tgttctttctgatttgcctgacttagaaagcactgttgctttgcttgcgcatgagataaccagctgtgatgagctgtataacttgcagcccacttctgat |
28376174 |
T |
|
| Q |
210 |
gatgtc |
215 |
Q |
| |
|
|||||| |
|
|
| T |
28376175 |
gatgtc |
28376180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 11 - 215
Target Start/End: Original strand, 28383797 - 28384002
Alignment:
| Q |
11 |
caagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattgatttctcttttcttctttaaaatagccagaacgttctcagaa |
110 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||| ||||| |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28383797 |
caagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagccagaacgttctcagaa |
28383896 |
T |
|
| Q |
111 |
tgttctttctgatttgcctggctttgaaagcattgttgc-ttgcttgcgcatgagataaccagttgtagtgagctgtataacttgttgcccaatgttgat |
209 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||| |||||| ||||||||||||||||||||||| ||| |||||||||||||||| ||||| | |||| |
|
|
| T |
28383897 |
tgttctttctgatttgcctgacttagaaagcactgttgctttgcttgcgcatgagataaccagctgtgatgagctgtataacttgcagcccacttctgat |
28383996 |
T |
|
| Q |
210 |
gatgtc |
215 |
Q |
| |
|
|||||| |
|
|
| T |
28383997 |
gatgtc |
28384002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 4951290 - 4951155
Alignment:
| Q |
1 |
tcttggtgatcaagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattgatttctcttttcttctttaaaatagccagaac |
100 |
Q |
| |
|
||||||||||||||||||||| || || |||||||| ||||| |||| |||| ||||| || ||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
4951290 |
tcttggtgatcaagggagaaactagagttgttggacacgtttttgataactgtctaaagtctcaattgatttctcttttcttcttaaaaataggaagaac |
4951191 |
T |
|
| Q |
101 |
gttctcagaatgttctttctgatttgcctggctttg |
136 |
Q |
| |
|
||||||| |||||| | |||||||||| | |||||| |
|
|
| T |
4951190 |
gttctcataatgttatgtctgatttgcatagctttg |
4951155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 116
Target Start/End: Original strand, 7784651 - 7784764
Alignment:
| Q |
2 |
cttggtgatcaagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattgatttctcttttcttctttaaaatagccagaacg |
101 |
Q |
| |
|
||||||||||||| | ||||||| | |||||||| |||||| | || | ||||||| ||| ||||||||| |||||||||||| ||| || ||||| | |
|
|
| T |
7784651 |
cttggtgatcaagagtgaaaatagtgttgttggacatgtttttggcagctttccaaagcttcaattgatttcacttttcttcttt-aaacagacagaatg |
7784749 |
T |
|
| Q |
102 |
ttctcagaatgttct |
116 |
Q |
| |
|
|||| |||||||||| |
|
|
| T |
7784750 |
ttcttagaatgttct |
7784764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 124; Significance: 6e-64; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 412992 - 412777
Alignment:
| Q |
1 |
tcttggtgatcaagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattgatttctcttttcttctttaaaatagccagaac |
100 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||| |||| ||||| |||||||||| || |||||||||||||||||||||||||||||||||||| |
|
|
| T |
412992 |
tcttggtgatcaagggagaaaatagagttgttggactcttttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagccagaac |
412893 |
T |
|
| Q |
101 |
gttctcagaatgttctttctgatttgcctggctttgaaagcattgttgc-ttgcttgcgcatgagataaccagttgtagtgagctgtataacttgttgcc |
199 |
Q |
| |
|
||||||| |||||||||||||||||| ||| ||||||||||| | |||| |||||||| |||||||||||||| |||| |||||||||||||||| |||| |
|
|
| T |
412892 |
gttctcataatgttctttctgatttgtctgactttgaaagcactattgctttgcttgcacatgagataaccagctgtaatgagctgtataacttgctgcc |
412793 |
T |
|
| Q |
200 |
caatgttgatgatgtc |
215 |
Q |
| |
|
|| | |||||||||| |
|
|
| T |
412792 |
cacttctgatgatgtc |
412777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 121; Significance: 4e-62; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 31710959 - 31711162
Alignment:
| Q |
1 |
tcttggtgatcaagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattgatttctcttttcttctttaaaatagccagaac |
100 |
Q |
| |
|
|||||||||||||| ||||||||| || ||||||||| ||||| |||||||||||||||| || ||||||||||||||||||||| |||||||||||| |
|
|
| T |
31710959 |
tcttggtgatcaagtgagaaaatagagttgttggacgcgtttttgatagttgtccaaagtctcaattgatttctcttttcttcttaaaaatagccaga-- |
31711056 |
T |
|
| Q |
101 |
gttctcagaatgttctttctgatttgcctggctttgaaagcattgttgcttgcttgcgcatgagataaccagttgtagtgagctgtataacttgttgccc |
200 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| |||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||| |
|
|
| T |
31711057 |
---------atgttctttctgattttcctggctttgaaagcactgttgcttgcttgcgcgtgagagaaccagttgtaatgagctgtataacttgttgccc |
31711147 |
T |
|
| Q |
201 |
aatgttgatgatgtc |
215 |
Q |
| |
|
|||| |||||||||| |
|
|
| T |
31711148 |
aatgctgatgatgtc |
31711162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 24023235 - 24023429
Alignment:
| Q |
1 |
tcttggtgatcaagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattgatttctcttttcttctttaaaatagccagaac |
100 |
Q |
| |
|
|||| ||||||||||||||||||| || |||||||| ||||| ||||| | |||||||| || |||||||||||||||||||||||||||||||||||| |
|
|
| T |
24023235 |
tcttagtgatcaagggagaaaatagagttgttggacacgtttttgatagctatccaaagtctcaattgatttctcttttcttctttaaaatagccagaac |
24023334 |
T |
|
| Q |
101 |
gttctcagaatgttctttctgatttgcctggctttgaaagcattgttgcttgcttgcgcatgagataaccagttgtagtgagctgtataacttgt |
195 |
Q |
| |
|
||||| |||||||||| ||||| |||||| ||||||||||| |||||||| ||||||| ||||| ||||| |||| |||||||| |||||||| |
|
|
| T |
24023335 |
gttcttagaatgttctgtctgaattgccttactttgaaagcactgttgctttcttgcgcgtgagagaaccaactgtaatgagctgtttaacttgt |
24023429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 14272750 - 14272537
Alignment:
| Q |
1 |
tcttggtgatcaagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattgatttctcttttcttctttaaaatagccagaac |
100 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||| ||||| ||||| |||||||||| || ||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
14272750 |
tcttggtgatcaagggagaaaatagagttgttggacacgtttttgatagctgtccaaagtctcaattgatttctcttttctacttataaatagccagaac |
14272651 |
T |
|
| Q |
101 |
gttctcagaatgttctttctgatttgcctggctttgaaagcattgttgcttgcttgcgcatgagataaccagttgtagtgagctgtataacttgttgccc |
200 |
Q |
| |
|
||| |||||||||||| ||||| |||||| ||||||||||||||||||||||||||| | || ||||| |||| |||| ||| | ||||||||||| |
|
|
| T |
14272650 |
gttttcagaatgttctgtctgaattgcctaactttgaaagcattgttgcttgcttgcgagggggagaaccaactgtaatgagttgt-ttacttgttgccc |
14272552 |
T |
|
| Q |
201 |
aatgttgatgatgtc |
215 |
Q |
| |
|
||||||||| ||||| |
|
|
| T |
14272551 |
aatgttgattatgtc |
14272537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 9e-23; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 15810474 - 15810676
Alignment:
| Q |
1 |
tcttggtgatcaagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattgatttctcttttcttctttaaaatagccagaac |
100 |
Q |
| |
|
||||||||||||| || | ||||| || |||||||| |||| ||||| |||||||||| ||||||||| |||||||||| ||||||| ||||| |
|
|
| T |
15810474 |
tcttggtgatcaatggtgcaaatagagttgttggacacatttttgatagctgtccaaagtcctaattgatttcatttttcttcttaaaaatagacagaat |
15810573 |
T |
|
| Q |
101 |
gttctcagaatgttctttctgatttgcctggctttgaaagcattgttgcttgcttgcgcatgagataaccagttgtagtgagctgtataacttgttgccc |
200 |
Q |
| |
|
| |||||||||||| | |||||||||| | ||||| ||| ||||||||||||||| ||||| |||||| |||| |||||||| | ||||||||| | |
|
|
| T |
15810574 |
gatctcagaatgttatgtctgatttgcataactttgcttgcactgttgcttgcttgcgagtgagagaaccagctgtaatgagctgttttacttgttgctc |
15810673 |
T |
|
| Q |
201 |
aat |
203 |
Q |
| |
|
||| |
|
|
| T |
15810674 |
aat |
15810676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 130
Target Start/End: Original strand, 41000872 - 41001003
Alignment:
| Q |
2 |
cttggtgatcaagggagaaaatatagctgttggacgtgttttag---atagttgtccaaagtttctattgatttctcttttcttctttaaaatagccaga |
98 |
Q |
| |
|
||||||||||||| | ||||||| || |||||||| ||||| |||| |||||||||| || |||||||| ||||||||||| ||| | | |||| |
|
|
| T |
41000872 |
cttggtgatcaagagtgaaaatagagatgttggacacgtttttttttatagatgtccaaagtctcatttgatttcacttttcttcttaaaattgggcaga |
41000971 |
T |
|
| Q |
99 |
acgttctcagaatgttctttctgatttgcctg |
130 |
Q |
| |
|
| | |||||||||||| | ||||||||||||| |
|
|
| T |
41000972 |
aagatctcagaatgttatgtctgatttgcctg |
41001003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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