View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16909_low_4 (Length: 354)
Name: NF16909_low_4
Description: NF16909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16909_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 321; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 10 - 338
Target Start/End: Original strand, 53491588 - 53491916
Alignment:
| Q |
10 |
catcatcatgaaccatcaccatcgctccaatctgttaaaaaagcggacaaaaatataaatgcaatcgtacataagaggaatccttccattcatgtatact |
109 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53491588 |
catcaccatgaaccatcaccatcgctccaatctgttaaaaaagcggacaaaaatataaatgcaatcgtacataagaggaatccttccattcatgtatact |
53491687 |
T |
|
| Q |
110 |
ctagacattaaaagcttacagttcgagtagaatagccccatgaattctgccaaaccattgctttctctcccttcatatcttcaaattttacctcgaactt |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53491688 |
ctagacattaaaagcttacagttcgagtagaatagccccatgaattctgccaaaccattgctttctctcccttcatatcttcaaattttacctcgaactt |
53491787 |
T |
|
| Q |
210 |
ttcagcaaacttttgtctcaaacaatgggtagttgcaccttgtatcccacaaccagtgtttggaataaatgcctaggaaaattgaacaggaggaagggcc |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
53491788 |
ttcagcaaacttttgtctcaaacaatgggtagttgcaccttgtatcccacaaccagtgtttggaataaatgcctaggaaaattgaacaggaggaaaggcc |
53491887 |
T |
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| Q |
310 |
tcaaatactcattacagatgccaaagatg |
338 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
53491888 |
tcaaatactcattacagatgccaaagatg |
53491916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 16 - 297
Target Start/End: Original strand, 53499187 - 53499468
Alignment:
| Q |
16 |
catgaaccatcaccatcgctccaatctgttaaaaaagcggacaaaaatataaatgcaatcgtacataagaggaatccttccattcatgtatactctagac |
115 |
Q |
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|||||||||||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||| |||| | |||||||||||||||||||||||| |
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| T |
53499187 |
catgaaccatcaccattgctccaatctgttaaataagcggactaaaatataaatgcaatcgtacataaaaggagttcttccattcatgtatactctagac |
53499286 |
T |
|
| Q |
116 |
attaaaagcttacagttcgagtagaatagccccatgaattctgccaaaccattgctttctctcccttcatatcttcaaattttacctcgaacttttcagc |
215 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
53499287 |
attaaaagcttacagttcgagtagaatagccccatgagttctgccaaaccattgctttctctcccttcttatcttcaaattttacctcgaacttttcagc |
53499386 |
T |
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| Q |
216 |
aaacttttgtctcaaacaatgggtagttgcaccttgtatcccacaaccagtgtttggaataaatgcctaggaaaattgaaca |
297 |
Q |
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||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
53499387 |
aaacttttgtcccaagcaatgggtagttgcaccttgtatcccacaaccagtgtttggaataaatgcctaggaaaactgaaca |
53499468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 111 - 297
Target Start/End: Original strand, 16070390 - 16070576
Alignment:
| Q |
111 |
tagacattaaaagcttacagttcgagtagaatagccccatgaattctgccaaaccattgctttctctcccttcatatcttcaaattttacctcgaacttt |
210 |
Q |
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|||||||| |||||||||||||||||||||| | |||||||| |||||||||||||||| ||||||| ||||| |||||||||| |||| ||| ||||| |
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| T |
16070390 |
tagacattgaaagcttacagttcgagtagaaaacccccatgagttctgccaaaccattgttttctctaccttcttatcttcaaagtttatctcaaacttc |
16070489 |
T |
|
| Q |
211 |
tcagcaaacttttgtctcaaacaatgggtagttgcaccttgtatcccacaaccagtgtttggaataaatgcctaggaaaattgaaca |
297 |
Q |
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|||||||||||||||| |||||||||||||| ||||||||||||||||| |||| ||||||||||||| |||||| ||||||||||| |
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| T |
16070490 |
tcagcaaacttttgtcccaaacaatgggtagctgcaccttgtatcccacgaccaatgtttggaataaaagcctagaaaaattgaaca |
16070576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 46
Target Start/End: Original strand, 16070267 - 16070303
Alignment:
| Q |
10 |
catcatcatgaaccatcaccatcgctccaatctgtta |
46 |
Q |
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||||| ||||||||||||||||| ||||||||||||| |
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| T |
16070267 |
catcaccatgaaccatcaccatcactccaatctgtta |
16070303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 120 - 288
Target Start/End: Complemental strand, 45355076 - 45354908
Alignment:
| Q |
120 |
aaagcttacagttcgagtagaatagccccatgaattctgccaaaccattgctttctctcccttcatatcttcaaattttacctcgaacttttcagcaaac |
219 |
Q |
| |
|
||||||||||||||||||| |||| |||| || |||||||| ||||||||||||||||||||| || |||| | |||| ||| ||| ||| |||||| |
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| T |
45355076 |
aaagcttacagttcgagtactataggcccacgagttctgccagaccattgctttctctcccttctcattttcatagtttatctcaaacattttagcaaaa |
45354977 |
T |
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| Q |
220 |
ttttgtctcaaacaatgggtagttgcaccttgtatcccacaaccagtgtttggaataaatgcctaggaa |
288 |
Q |
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||||||| ||||||||| | ||||||||||||||| |||| |||||||||||||||||||||||||||| |
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| T |
45354976 |
ttttgtcccaaacaatgagaagttgcaccttgtataccacgaccagtgtttggaataaatgcctaggaa |
45354908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 45355184 - 45355140
Alignment:
| Q |
10 |
catcatcatgaaccatcaccatcgctccaatctgttaaaaaagcg |
54 |
Q |
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||||| ||||||||||||||||| | |||||||||| |||||||| |
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| T |
45355184 |
catcaccatgaaccatcaccatcaccccaatctgttgaaaaagcg |
45355140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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