View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1690_high_14 (Length: 423)
Name: NF1690_high_14
Description: NF1690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1690_high_14 |
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Alignment Details
Target: chr2 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 11 - 406
Target Start/End: Original strand, 679402 - 679797
Alignment:
| Q |
11 |
cacagagacgcaggcagaagcagaaaaagaggcttatcgatgtcgcagtctttggagcttctgcttatacaattcttgatgccagataacgacgcacgcc |
110 |
Q |
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| T |
679402 |
cacagagacgcaggcagaagcagaaaaagaggcttatcgatgtcgcagtctttggagcttctgcttatacaattcttgatgccagataacgacgcacgcc |
679501 |
T |
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| Q |
111 |
gtcaagctgaagatcaaatcaaacgcctcgccaaagatcctcaagtcgtccccgctttgattcatcacctccgcaccgctaaaacccctaacgtccgtca |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
679502 |
gtcaagctgaagatcaaatcaaacgcctcgccaaagatcctcaagtcgtccccgctttgattcatcacctccgcaccgctaaaacccctaacgtccgtca |
679601 |
T |
|
| Q |
211 |
actctccgccgtcctcctccgtaagaaaatcaccggtcattggtctaaactctctcctcaaatcaaacaactcgttaaacaatctctcattgatagcatc |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
679602 |
actctccgccgtcctcctccgtaagaaaatcaccggtcattggtctaaactctctcctcaaatcaaacaactcgttaaacaatctctcattgatagcatc |
679701 |
T |
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| Q |
311 |
accatggaacacaggtcagtcatacttcttaactcaatcacttcattattaacacaatttagcttaatttgattaattcaataatctgtatatttt |
406 |
Q |
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||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
679702 |
accatggaacacaggtcagtcatacttcttatcttaatcacttcattattaacacaatttagcttaatttgattaattcaataatctgtatatttt |
679797 |
T |
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